mRNA_S-ischiensis_contig92.20954.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig92.20954.1
Unique NamemRNA_S-ischiensis_contig92.20954.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig92.20954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig92contigS-ischiensis_contig92:428849..429556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size708
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig92.20954.1prot_S-ischiensis_contig92.20954.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig92 429143..429538 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817416.3445232-UTR-S-ischiensis_contig92:428848..4291421622817416.3445232-UTR-S-ischiensis_contig92:428848..429142Schizocladia ischiensis KU_0333UTRS-ischiensis_contig92 428849..429142 +
1695741098.6900432-UTR-S-ischiensis_contig92:428848..4291421695741098.6900432-UTR-S-ischiensis_contig92:428848..429142Schizocladia ischiensis KU_0333UTRS-ischiensis_contig92 428849..429142 +
1622817416.3714554-UTR-S-ischiensis_contig92:429538..4295561622817416.3714554-UTR-S-ischiensis_contig92:429538..429556Schizocladia ischiensis KU_0333UTRS-ischiensis_contig92 429539..429556 +
1695741098.7167177-UTR-S-ischiensis_contig92:429538..4295561695741098.7167177-UTR-S-ischiensis_contig92:429538..429556Schizocladia ischiensis KU_0333UTRS-ischiensis_contig92 429539..429556 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817416.3610342-CDS-S-ischiensis_contig92:429142..4295381622817416.3610342-CDS-S-ischiensis_contig92:429142..429538Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 429143..429538 +
1695741098.7048078-CDS-S-ischiensis_contig92:429142..4295381695741098.7048078-CDS-S-ischiensis_contig92:429142..429538Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 429143..429538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig92.20954.1

>prot_S-ischiensis_contig92.20954.1 ID=prot_S-ischiensis_contig92.20954.1|Name=mRNA_S-ischiensis_contig92.20954.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=132bp
MEHCRYCAVQHFQCRDVRVQLRVGIRYVLAVAGVDRPMALTMYFVRASNT
IVQRYLCCAVAPCSWALAYLIPVWWHHHVFWGLSHGNGSGPPLPGNWQLC
RAGAARWWLARQATLMSMCFREMFESVPHKE*
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mRNA from alignment at S-ischiensis_contig92:428849..429556+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig92.20954.1 ID=mRNA_S-ischiensis_contig92.20954.1|Name=mRNA_S-ischiensis_contig92.20954.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=708bp|location=Sequence derived from alignment at S-ischiensis_contig92:428849..429556+ (Schizocladia ischiensis KU_0333)
GACGCCAGCCCAGGTGGGGATGCCGTAGGGCTTGGGGGCAGGCTCCTCTC
TCTTCGCAGAGATAGTGGGGCGGGTGGTAGGCCTTAGTGGCGGTGCGGAG
GGGCCATTCCTCCATATATTGTCATATCTATGAGTGTTTCTCCGTGCTTT
AGGGCTGTGGCGGTGTGTCTTGGCCGGGTGTACAGTGTCCAGAGGTCGAG
TGTAGTACTGTAGAATAGGTACTACAGAACTGTACTGTCCTTCGAAGTGC
AACAGTAGTGTACCTGTCGTGCAGTACAGTAAGTGCTCGTGTCTATGGAA
CATTGCAGGTATTGTGCAGTACAACACTTTCAGTGCAGAGATGTACGAGT
ACAATTGCGTGTTGGCATAAGATATGTACTTGCAGTAGCGGGGGTGGACC
GCCCGATGGCACTGACAATGTACTTCGTACGTGCGAGCAATACAATTGTT
CAGCGGTACTTGTGCTGTGCTGTAGCCCCCTGCTCCTGGGCGCTCGCATA
TCTCATACCTGTCTGGTGGCACCATCATGTCTTTTGGGGCCTATCACACG
GCAACGGGTCAGGCCCGCCACTGCCCGGGAACTGGCAGCTGTGCCGAGCC
GGTGCGGCGCGGTGGTGGCTCGCCAGGCAAGCCACTTTGATGAGCATGTG
CTTTAGAGAAATGTTTGAATCAGTGCCGCATAAAGAGTGAACAAATGCAT
CAGTGAAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig92:428849..429556+

>mRNA_S-ischiensis_contig92.20954.1 ID=mRNA_S-ischiensis_contig92.20954.1|Name=mRNA_S-ischiensis_contig92.20954.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=792bp|location=Sequence derived from alignment at S-ischiensis_contig92:428849..429556+ (Schizocladia ischiensis KU_0333)
ATGGAACATTGCAGGTATTGTGCAGTACAACACTTTCAGTGCAGAGATGT
ACGAGTACAATTGCGTGTTGGCATAAGATATGTACTTGCAGTAGCGGGGG
TGGACCGCCCGATGGCACTGACAATGTACTTCGTACGTGCGAGCAATACA
ATTGTTCAGCGGTACTTGTGCTGTGCTGTAGCCCCCTGCTCCTGGGCGCT
CGCATATCTCATACCTGTCTGGTGGCACCATCATGTCTTTTGGGGCCTAT
CACACGGCAACGGGTCAGGCCCGCCACTGCCCGGGAACTGGCAGCTGTGC
CGAGCCGGTGCGGCGCGGTGGTGGCTCGCCAGGCAAGCCACTTTGATGAG
CATGTGCTTTAGAGAAATGTTTGAATCAGTGCCGCATAAAGAGTGAATGG
AACATTGCAGGTATTGTGCAGTACAACACTTTCAGTGCAGAGATGTACGA
GTACAATTGCGTGTTGGCATAAGATATGTACTTGCAGTAGCGGGGGTGGA
CCGCCCGATGGCACTGACAATGTACTTCGTACGTGCGAGCAATACAATTG
TTCAGCGGTACTTGTGCTGTGCTGTAGCCCCCTGCTCCTGGGCGCTCGCA
TATCTCATACCTGTCTGGTGGCACCATCATGTCTTTTGGGGCCTATCACA
CGGCAACGGGTCAGGCCCGCCACTGCCCGGGAACTGGCAGCTGTGCCGAG
CCGGTGCGGCGCGGTGGTGGCTCGCCAGGCAAGCCACTTTGATGAGCATG
TGCTTTAGAGAAATGTTTGAATCAGTGCCGCATAAAGAGTGA
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