mRNA_S-ischiensis_contig92.20948.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig92.20948.1 vs. uniprot
Match: D7G2A6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2A6_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 1.190e-16 Identity = 40/70 (57.14%), Postives = 54/70 (77.14%), Query Frame = 3
Query: 1077 RSNRFPGVSFFKGRYTAQMTWGGQQYYLSRYDTAEQAHAVIKKAVMEVKETGYLTCPRHSGFKVLEVVPP 1286
R++++ GVSFFKGR+TAQ TWGG+QYYL RYDT +AH V+++A EV ETG LT PR+ G +V+ + P
Sbjct: 182 RTSKYHGVSFFKGRFTAQFTWGGKQYYLGRYDTEGEAHTVVQRATKEVMETGNLTLPRNRGNEVVRLGAP 251
BLAST of mRNA_S-ischiensis_contig92.20948.1 vs. uniprot
Match: A0A6H5K639_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K639_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 7.480e-16 Identity = 41/70 (58.57%), Postives = 54/70 (77.14%), Query Frame = 3
Query: 1077 RSNRFPGVSFFKGRYTAQMTWGGQQYYLSRYDTAEQAHAVIKKAVMEVKETGYLTCPRHSGFKVLEVVPP 1286
R++++ GVSFFKGRYTAQ TWGG+QYYL RYDT +AH V+++A EV ETG LT PR+ G +V++ P
Sbjct: 248 RTSKYHGVSFFKGRYTAQFTWGGKQYYLGRYDTEGEAHTVVQRATKEVMETGSLTLPRNRGNEVVQFGAP 317 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig92.20948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig92.20948.1 >prot_S-ischiensis_contig92.20948.1 ID=prot_S-ischiensis_contig92.20948.1|Name=mRNA_S-ischiensis_contig92.20948.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=493bp MTGPLARRRAKGPSYSYAVEDQNGSDVSTQQHSRKALAVERQEASLLPAAback to top mRNA from alignment at S-ischiensis_contig92:388938..401842+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig92.20948.1 ID=mRNA_S-ischiensis_contig92.20948.1|Name=mRNA_S-ischiensis_contig92.20948.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=12905bp|location=Sequence derived from alignment at S-ischiensis_contig92:388938..401842+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig92:388938..401842+ >mRNA_S-ischiensis_contig92.20948.1 ID=mRNA_S-ischiensis_contig92.20948.1|Name=mRNA_S-ischiensis_contig92.20948.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2958bp|location=Sequence derived from alignment at S-ischiensis_contig92:388938..401842+ (Schizocladia ischiensis KU_0333)back to top |