mRNA_S-ischiensis_contig92.20947.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig92.20947.1
Unique NamemRNA_S-ischiensis_contig92.20947.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig92.20947.1 vs. uniprot
Match: A0A835YX81_9STRA (Yos1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX81_9STRA)

HSP 1 Score: 108 bits (270), Expect = 6.810e-29
Identity = 51/76 (67.11%), Postives = 60/76 (78.95%), Query Frame = 2 
Query:   56 TLWNLFKAGLLVTNGVAVLHKRRFLSKLGLAEPDQTALASGVKNQVIGLVNAVTYLRVPLIAVNTLTCAFELVFGG 283
            +LW+LFK GLLVTN VA+LHK RFL  LG AEPD    +S +KNQ IGL+NAV YLR PLIA+N LTC FE++FGG
Sbjct:    3 SLWSLFKTGLLVTNAVAILHKERFLRPLGWAEPDPALGSSNLKNQAIGLINAVAYLRGPLIAINLLTCTFEMLFGG 78
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BLAST of mRNA_S-ischiensis_contig92.20947.1 vs. uniprot
Match: K8ZAA6_NANGC (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8ZAA6_NANGC)

HSP 1 Score: 97.4 bits (241), Expect = 1.760e-24
Identity = 46/79 (58.23%), Postives = 63/79 (79.75%), Query Frame = 2 
Query:   47 MGFTLWNLFKAGLLVTNGVAVLHKRRFLSKLGLAEPDQTALASGVKNQVIGLVNAVTYLRVPLIAVNTLTCAFELVFGG 283
            M FT+W+L+K+GLL TNGVAVLH++RFL K GL +  + A  + ++NQV+GL+NAV YL+VPLIA+N +T   EL+FGG
Sbjct:    1 MAFTIWSLYKSGLLFTNGVAVLHRKRFLRKYGL-DVAEVADTTSIRNQVVGLLNAVQYLKVPLIALNIVTVVIELLFGG 78
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BLAST of mRNA_S-ischiensis_contig92.20947.1 vs. uniprot
Match: A0A7S2ULA9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2ULA9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.360e-20
Identity = 45/86 (52.33%), Postives = 58/86 (67.44%), Query Frame = 2 
Query:   47 MGFTLWNLFKAGLLVTNGVAVLHKRRFLSKLGLAE-------PDQTALASGVKNQVIGLVNAVTYLRVPLIAVNTLTCAFELVFGG 283
            MGF++WNLFK GLL+TN + +LH+RRFL++ GL E       P Q  L +    Q IGL+ AV YLRVP+I VN LT  FE++ GG
Sbjct:   29 MGFSIWNLFKVGLLLTNSILILHRRRFLARYGLDELNNMGCDPSQKPLQA----QAIGLLQAVQYLRVPVIGVNMLTIVFEMILGG 110
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BLAST of mRNA_S-ischiensis_contig92.20947.1 vs. uniprot
Match: D7FPN5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPN5_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.670e-20
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = 2 
Query:   50 GFTL-WNLFKAGLLVTNGVAVLHKRRFLSKLGLAEPDQTALASGVKNQVIGLVNAVTYLRVPLIAVNTLTCAFELV 274
            GF L W LFKAGLL TN V +LHK+RFL K  L E D +  AS +KNQV+GL+ AV YLR PLI +N+LTC   ++
Sbjct:    4 GFNLLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 79
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BLAST of mRNA_S-ischiensis_contig92.20947.1 vs. uniprot
Match: A0A7S2EBW0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EBW0_TRICV)

HSP 1 Score: 84.0 bits (206), Expect = 7.830e-19
Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = 2 
Query:   47 MGFTLWNLFKAGLLVTNGVAVLHKRRFLSKLGL-------AEPDQTALASGVKNQVIGLVNAVTYLRVPLIAVNTLTCAFELVFGG 283
            MGF+LWNLFKAGLL+TN V +L++RRFL+K GL        +P Q  L +    Q IGL+ AV+YL+ P+I +N LT  FE++ GG
Sbjct:   24 MGFSLWNLFKAGLLMTNSVMILNRRRFLAKHGLDDVTNMPVDPQQRPLQA----QAIGLLQAVSYLKFPVICLNCLTIIFEMLLGG 105
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BLAST of mRNA_S-ischiensis_contig92.20947.1 vs. uniprot
Match: A0A096PBJ1_OSTTA (Yos1-like n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096PBJ1_OSTTA)

HSP 1 Score: 72.4 bits (176), Expect = 1.340e-14
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 2 
Query:   56 TLWNLFKAGLLVTNGVAVLHKRRFLSKLGLAEP---DQTALASGVKNQVIGLVNAVTYLRVPLIAVNTLTCAFELVFG 280
            TLW L ++ LL  N VAVL++RRFL+K GL      D +  A+  + Q+IG++NA +YLRVPLIA+N +    ++VFG
Sbjct:    2 TLWTLTQSALLSVNAVAVLNERRFLAKRGLTMESIRDGSTSATSARGQIIGVINAASYLRVPLIALNAIVIFVKVVFG 79
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BLAST of mRNA_S-ischiensis_contig92.20947.1 vs. uniprot
Match: A0A2A2KV20_9BILA (Immediate early response 3-interacting protein 1 n=1 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2KV20_9BILA)

HSP 1 Score: 72.0 bits (175), Expect = 1.940e-14
Identity = 40/80 (50.00%), Postives = 51/80 (63.75%), Query Frame = 2 
Query:   47 MGFTLWNLFKAGLLVTNGVAVLHKRRFLSKLGLA-EPDQTALASGVKNQVIGLVNAV-TYLRVPLIAVNTLTCAFELVFG 280
            M  + + L +A LLV NG+AVLHK RFL K GL   P      S VKNQV+GL+ AV T +R+PLI +N L   F+L+ G
Sbjct:    1 MALSFYGLLEAALLVLNGIAVLHKDRFLKKYGLTVSPHSFESQSSVKNQVVGLILAVQTVMRMPLIPINILVIVFKLLLG 80
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BLAST of mRNA_S-ischiensis_contig92.20947.1 vs. uniprot
Match: A0A2A2LM05_9BILA (Immediate early response 3-interacting protein 1 n=1 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2LM05_9BILA)

HSP 1 Score: 70.5 bits (171), Expect = 2.110e-13
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 2 
Query:   47 MGFTLWNLFKAGLLVTNGVAVLHKRRFLSKLGLA-EPDQTALASGVKNQVIGLVNAV-TYLRVPLIAVNTLTCAFELVFG 280
            M  + + L +A LLV NG+AVLHK RFL K GL   P      + VKNQ++GL+ AV T +R+PLI +N L   F+L+ G
Sbjct:   40 MALSFYGLLEAALLVLNGIAVLHKDRFLKKYGLTVSPHSFESQNSVKNQIVGLILAVQTVMRMPLIPINILVIVFKLLLG 119
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BLAST of mRNA_S-ischiensis_contig92.20947.1 vs. uniprot
Match: A0A3F2RI45_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RI45_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.850e-13
Identity = 34/74 (45.95%), Postives = 46/74 (62.16%), Query Frame = 2 
Query:   59 LWNLFKAGLLVTNGVAVLHKRRFLSKLGLAEPDQTALASGVKNQVIGLVNAVTYLRVPLIAVNTLTCAFELVFG 280
            LWN F   LL+TN V +LH++RFL   G  + D +     +KNQ++G + AV YLR PL+ +NTL    ELV G
Sbjct:    4 LWNFFLTSLLLTNAVCILHEKRFLRSHGWDKVDSSQ-GMTIKNQIVGFLIAVQYLRFPLMVINTLMILLELVMG 76
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BLAST of mRNA_S-ischiensis_contig92.20947.1 vs. uniprot
Match: A0A2D4BY06_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BY06_PYTIN)

HSP 1 Score: 68.6 bits (166), Expect = 4.040e-13
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 2 
Query:   59 LWNLFKAGLLVTNGVAVLHKRRFLSKLGLAEPDQTALASGVKNQVIGLVNAVTYLRVPLIAVNTLTCAFELVFG 280
            LW  F + LL+TN V +LH++RFL K G  + D +     ++NQ++G + AV YLRVPLI VN L    +LV G
Sbjct:    4 LWGFFLSSLLLTNAVCILHEKRFLRKYGWDKVDPSQ-GMTIRNQIVGFLVAVQYLRVPLIVVNALMILLQLVMG 76
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig92.20947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YX81_9STRA6.810e-2967.11Yos1-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
K8ZAA6_NANGC1.760e-2458.23Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2ULA9_9STRA1.360e-2052.33Hypothetical protein n=1 Tax=Attheya septentrional... [more]
D7FPN5_ECTSI1.670e-2057.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2EBW0_TRICV7.830e-1951.16Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A096PBJ1_OSTTA1.340e-1447.44Yos1-like n=1 Tax=Ostreococcus tauri TaxID=70448 R... [more]
A0A2A2KV20_9BILA1.940e-1450.00Immediate early response 3-interacting protein 1 n... [more]
A0A2A2LM05_9BILA2.110e-1347.50Immediate early response 3-interacting protein 1 n... [more]
A0A3F2RI45_9STRA2.850e-1345.95Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A2D4BY06_PYTIN4.040e-1345.95Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig92contigS-ischiensis_contig92:357650..359781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score68.9
Seed ortholog evalue1.2e-09
Seed eggNOG ortholog70448.A0A096PBJ1
EggNOG free text desc.Yos1-like
EggNOG OGs34IWH@3041,37W2V@33090,KOG4779@1,KOG4779@2759
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionYos1-like
Ec32 orthologEc-16_001310.1
Exons2
Model size330
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig92.20947.1prot_S-ischiensis_contig92.20947.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig92 357696..359737 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817418.2740169-UTR-S-ischiensis_contig92:357649..3576951622817418.2740169-UTR-S-ischiensis_contig92:357649..357695Schizocladia ischiensis KU_0333UTRS-ischiensis_contig92 357650..357695 +
1695741100.3818336-UTR-S-ischiensis_contig92:357649..3576951695741100.3818336-UTR-S-ischiensis_contig92:357649..357695Schizocladia ischiensis KU_0333UTRS-ischiensis_contig92 357650..357695 +
1622817418.318722-UTR-S-ischiensis_contig92:359737..3597811622817418.318722-UTR-S-ischiensis_contig92:359737..359781Schizocladia ischiensis KU_0333UTRS-ischiensis_contig92 359738..359781 +
1695741100.4159567-UTR-S-ischiensis_contig92:359737..3597811695741100.4159567-UTR-S-ischiensis_contig92:359737..359781Schizocladia ischiensis KU_0333UTRS-ischiensis_contig92 359738..359781 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817418.2914078-CDS-S-ischiensis_contig92:357695..3577861622817418.2914078-CDS-S-ischiensis_contig92:357695..357786Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 357696..357786 +
1695741100.3953567-CDS-S-ischiensis_contig92:357695..3577861695741100.3953567-CDS-S-ischiensis_contig92:357695..357786Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 357696..357786 +
1622817418.302903-CDS-S-ischiensis_contig92:359588..3597371622817418.302903-CDS-S-ischiensis_contig92:359588..359737Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 359589..359737 +
1695741100.4056342-CDS-S-ischiensis_contig92:359588..3597371695741100.4056342-CDS-S-ischiensis_contig92:359588..359737Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 359589..359737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig92.20947.1

>prot_S-ischiensis_contig92.20947.1 ID=prot_S-ischiensis_contig92.20947.1|Name=mRNA_S-ischiensis_contig92.20947.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=80bp
MGFTLWNLFKAGLLVTNGVAVLHKRRFLSKLGLAEPDQTALASGVKNQVI
GLVNAVTYLRVPLIAVNTLTCAFELVFGG*
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mRNA from alignment at S-ischiensis_contig92:357650..359781+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig92.20947.1 ID=mRNA_S-ischiensis_contig92.20947.1|Name=mRNA_S-ischiensis_contig92.20947.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2132bp|location=Sequence derived from alignment at S-ischiensis_contig92:357650..359781+ (Schizocladia ischiensis KU_0333)
CGAGGATCAGGATCGTGGTGACCCGACAGCGAGCTGGGGGCCCACCATGG
GCTTCACGTTATGGAACCTCTTCAAGGCTGGGCTGCTGGTCACCAACGGC
GTGGCCGTCTTGCACAAGCGAAGATTCCTCTCCAAACGTGAGTGATGCCG
GGCAGGGGGCGCGGTGTTTAGGGCCACGTGCAACTGCCCTTCGGGGGACG
AAGCGCTGGTGTAAAGGTCTGCAGAGGCCCTACAAATGAAGCTGTCCTGC
TGGACGCCTGTACTGGTTTGATGATTGTACCTTTTCTGTTTTCTGTGCAT
GTTGGACAGGTACTGCTCGACGCAGCACTGGTGCCAATGTACTCGCTTCG
TTGATTGTGCCCTGTTTTATGCACACTTGCCCGGACTTTGCAAGACTTGC
CCCGGCCTTTGTTCCTTGTCCTGGCTACAGTACACTGGCACTCCGCACAT
CTGCATGGTAGTAGTCATTGCGAGGGAGGCGAGCACACCATCCCTTCGTC
GTGTATATGTAGTCATACTCACGGCGTGCATGGAGCTACTGTATCGTACC
CTCTCTGTGCATGCCACTGGTCGGCGGCCCAGTATACTACTCTTACTACT
TGCTGGGCTTAATTTGATGACGTGATGTGACGTGATGTCAAAATACTGTA
CATTAGAGCACGCATCGCATCACATCACATCACATCACAGTACTGTAGTA
CACTACTTGCTGGGCAGCCGGCCAGCCCCCGCAGGGGGGGTCCTTTCTGC
CATTGGCCTCGCGTCCCTACTATGCCGAGACTGAAAGTACCGGGTTTTCA
CCGGCCGAGCGTATCTTTCTCTGTTCATCTGTATTGAAGGTGGTGATACC
TCACCACGTGGCTTGAACGCTCCAGACGGTGGAATGCCACCATGGATGGC
ATGGTTCGTTCTGGTGCTGGGGGGGGCTTGCTGCTGCTTTGAAGTTGAGC
AAGTTTTATGGACGGCGCAAGTACAGTACACAGAGTAGCTATGGTACGGA
GTGCTACTTGTACAGTAGTATTGTAGTTCTCGTAACTACCGTACTCGAGT
ACATTCTTGGACAGCTCAACGCCAGTAGACAGTCTTTCTGATCATCTCAA
CCCTCCCGAAAAGAGATCAAATCTCCGCCTTCGTCCCGTAAGGAGTATGC
GGAACCCACTTTTCTAACCCCCAAATGTACGCGTAGTCAAATGGCCATAT
GGCTACCGTAGTATATGAGCCTCAATGACACTGCTCCGTCTCGACTGAGG
GGCGTGGTCCATGGTCTCGGGACTATGGCAAGCACAACGTGAGTACATAC
AATGACACGAGTACCCCCTAACCCCTACTGTAGGTTCTGAGCCGACCCGC
CCGCTAGCCCCGACCCTGTGGCCCTAGCACACTCCTTTGATCAACGTTAC
CTAACCCCGATTCTCCCGCCTCCCCCTTTTCCTTTTCCTTTCCTCTCCTC
TTCTCTCCTTCCTGCCTCCCTTCCTTCCCTCCTTCCAACAGTGGGCCTAG
TATAGCCGACCTTGACTGTGCTGGCTACCTACAGTAGTGTCGGAAGCGGT
TGAGAACCAGCCGTCCCCGAAATACTCAACAGTATGCATTAACCCTTTTA
CCCCTGGTAAATTGGATTCACACCACAAAACCCTATGAGTCTACGGACCC
CAGGGGTAAAAGGTTAGCCTCTACTCTAACCAACCCTAACCCTAACCCTA
GCCCTCAACCCTCCCTCCCATCCTCCCCCCCCTGCCCTCTGGCATTGGGG
CTCAAGAACTAGCCGTCCCCGAAATACTCAAGTGCAAAGTATATACATTT
GCCTCTACTCTAACCGACCCTAGCCCTAACCCCCCCCTTCCTTCCGTCCT
CCCCCACCCTCCTTCCTTCCTTCCTTCCTTCCTTCCTCCCTTCCTTCCTT
CCTCCCTCCCTTCCTTCCTTCCTTCCTTCCGTCTGGCAGTGGGGCTGGCG
GAGCCGGACCAGACAGCGCTGGCGAGCGGCGTGAAGAACCAGGTCATCGG
CCTGGTCAACGCCGTCACCTACCTAAGGGTGCCCCTCATCGCCGTCAACA
CCCTCACCTGCGCCTTTGAGTTAGTCTTTGGCGGATGAGTATAAAAATAA
AACAAAAAATATATGCTTCTCGGAGCCGTCAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig92:357650..359781+

>mRNA_S-ischiensis_contig92.20947.1 ID=mRNA_S-ischiensis_contig92.20947.1|Name=mRNA_S-ischiensis_contig92.20947.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=480bp|location=Sequence derived from alignment at S-ischiensis_contig92:357650..359781+ (Schizocladia ischiensis KU_0333)
ATGGGCTTCACGTTATGGAACCTCTTCAAGGCTGGGCTGCTGGTCACCAA
CGGCGTGGCCGTCTTGCACAAGCGAAGATTCCTCTCCAAACATGGGCTTC
ACGTTATGGAACCTCTTCAAGGCTGGGCTGCTGGTCACCAACGGCGTGGC
CGTCTTGCACAAGCGAAGATTCCTCTCCAAACTGGGGCTGGCGGAGCCGG
ACCAGACAGCGCTGGCGAGCGGCGTGAAGAACCAGGTCATCGGCCTGGTC
AACGCCGTCACCTACCTAAGGGTGCCCCTCATCGCCGTCAACACCCTCAC
CTGCGCCTTTGAGTTAGTCTTTGGCGGATGATGGGGCTGGCGGAGCCGGA
CCAGACAGCGCTGGCGAGCGGCGTGAAGAACCAGGTCATCGGCCTGGTCA
ACGCCGTCACCTACCTAAGGGTGCCCCTCATCGCCGTCAACACCCTCACC
TGCGCCTTTGAGTTAGTCTTTGGCGGATGA
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