mRNA_S-ischiensis_contig92.20942.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig92.20942.1 vs. uniprot
Match: A0A836CEI0_9STRA (ATP-dependent DNA helicase RecG n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI0_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 2.700e-20 Identity = 50/85 (58.82%), Postives = 64/85 (75.29%), Query Frame = 1
Query: 10 HCVLLYGEGLGEEAGRRLEVVRSTTDGFALAEEDLRQRGPGEVLGLRQKGFIEGGA--YKVADLREPQHMDLMLEAHEQAKRLLD 258
HCVLLY E GE A RRL+V+ TTDGFA+AEEDL+ RGPGE+LG+RQKGF+ GGA ++V DL +H L+ AH A+RL++
Sbjct: 763 HCVLLYHESAGEVAVRRLKVMSETTDGFAIAEEDLKLRGPGELLGVRQKGFLFGGAGGFRVCDL--DKHAALVPPAHAHARRLVE 845
BLAST of mRNA_S-ischiensis_contig92.20942.1 vs. uniprot
Match: D7FPN7_ECTSI (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN7_ECTSI) HSP 1 Score: 94.0 bits (232), Expect = 5.660e-19 Identity = 65/162 (40.12%), Postives = 84/162 (51.85%), Query Frame = 1
Query: 7 SHCVLLYGEGLGEEAGRRLEVVRSTTDGFALAEEDLRQRGPGEVLGLRQKGFIEGGAYKVADLREPQHMDLMLEAHEQAKRLLDELLRLRARVHASTGAEGR---------GLLEMWEAFAWV---------QGLRTLMSATGKLHDADALLEGLGLASAPP 438
SHC+LLYG +G +A RL+ VR T DGF LAE DL RGPGEVLG+RQKG+IEG +KVADL + L A ++A+RL++ A A+ AE G + + E A + L L+ G DA ALL G + PP
Sbjct: 374 SHCILLYGPDVGNDATERLKAVRKTRDGFLLAERDLALRGPGEVLGMRQKGYIEG-KFKVADLA--RQGSLAEHASKRARRLVESWTPRGAAAAAAADAEEAAASGAPRVGGTVALKEGGAGADYDEERGRPESLGLLLVLCGLGADAKALLSGFASRTPPP 532
BLAST of mRNA_S-ischiensis_contig92.20942.1 vs. uniprot
Match: A0A6H5JXY9_9PHAE (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY9_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 6.900e-18 Identity = 47/84 (55.95%), Postives = 60/84 (71.43%), Query Frame = 1
Query: 7 SHCVLLYGEGLGEEAGRRLEVVRSTTDGFALAEEDLRQRGPGEVLGLRQKGFIEGGAYKVADLREPQHMDLMLEAHEQAKRLLD 258
SHC+LLYG +G +A RL+ VR T DGF LAE DL RGPGEVLG+RQKG+IEG +KVADL + L A ++A+RL++
Sbjct: 774 SHCILLYGPDVGNDATERLKAVRKTRDGFLLAERDLALRGPGEVLGMRQKGYIEG-KFKVADLA--RQGSLAEHASKRARRLVE 854
BLAST of mRNA_S-ischiensis_contig92.20942.1 vs. uniprot
Match: A4A9A1_9GAMM (ATP-dependent DNA helicase RecG n=1 Tax=Congregibacter litoralis KT71 TaxID=314285 RepID=A4A9A1_9GAMM) HSP 1 Score: 87.0 bits (214), Expect = 1.350e-16 Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = 1
Query: 7 SHCVLLYGEGLGEEAGRRLEVVRSTTDGFALAEEDLRQRGPGEVLGLRQKGFIEGGAYKVADLREPQHMDLMLEAHEQAKRLLDE 261
SHCVLLY LG+++ RL+V+R + DGF +AEEDLRQRGPGEVLG RQ G +E ++VA L P+H L+ E E A+ L E
Sbjct: 585 SHCVLLYQSPLGQQSRARLQVMRESNDGFYIAEEDLRQRGPGEVLGTRQTGLME---FRVARL--PEHEHLLEEVQEIAEALQQE 664
BLAST of mRNA_S-ischiensis_contig92.20942.1 vs. uniprot
Match: A0A831V1N6_9GAMM (ATP-dependent DNA helicase RecG n=1 Tax=Halothiobacillaceae bacterium TaxID=2268194 RepID=A0A831V1N6_9GAMM) HSP 1 Score: 82.4 bits (202), Expect = 2.660e-16 Identity = 48/88 (54.55%), Postives = 56/88 (63.64%), Query Frame = 1
Query: 7 SHCVLLYGEGLGEEAGRRLEVVRSTTDGFALAEEDLRQRGPGEVLGLRQKGFIEGGAYKVADLREPQ-HMDLMLEAHEQAKRLLDELL 267
SHCVLL+ E L + A RL ++R T DGF LAE DL QRGPGEVLG RQ G + K+ADL+E Q H+D A RL DELL
Sbjct: 89 SHCVLLFDEPLSDRARARLGLMRETEDGFRLAEADLEQRGPGEVLGTRQAGIAK---LKIADLQEDQGHLD-------DAGRLADELL 166
BLAST of mRNA_S-ischiensis_contig92.20942.1 vs. uniprot
Match: C5BJS9_TERTT (ATP-dependent DNA helicase RecG n=10 Tax=Teredinibacter turnerae TaxID=2426 RepID=C5BJS9_TERTT) HSP 1 Score: 85.1 bits (209), Expect = 6.270e-16 Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 1
Query: 7 SHCVLLYGEGLGEEAGRRLEVVRSTTDGFALAEEDLRQRGPGEVLGLRQKGFIEGGAYKVADLREPQHMDLMLEAHEQAKRLL 255
SHCVLLYG+ L E+A +RL+V+R T DGF +AE+DL+ RGPGEVLG RQ G ++ Y+VAD+ +H L+ E H+ ++ L
Sbjct: 576 SHCVLLYGDKLSEQARQRLQVLRETNDGFLVAEKDLQLRGPGEVLGTRQTGDMQ---YRVADMVRDEH--LLPEIHQLGEQYL 653
BLAST of mRNA_S-ischiensis_contig92.20942.1 vs. uniprot
Match: A0A522WLX0_9PROT (ATP-dependent DNA helicase RecG (Fragment) n=1 Tax=Magnetospirillum sp. TaxID=31872 RepID=A0A522WLX0_9PROT) HSP 1 Score: 81.6 bits (200), Expect = 7.980e-16 Identity = 53/121 (43.80%), Postives = 74/121 (61.16%), Query Frame = 1
Query: 1 RKSHCVLLYGEGLGEEAGRRLEVVRSTTDGFALAEEDLRQRGPGEVLGLRQKGFIEGGAYKVADLREPQHMDLMLEAHEQAKRLLDELLRLRARVHASTGAEGRGLLEMWEAFAWVQGLRT 363
+ S C+LLYG LGE A RLE++R+T DGFA+AEEDLR RG GE+LG RQ G E +++ADL +H +L+ A + A +L L++ G R LL ++E A V+ LR+
Sbjct: 99 KDSRCLLLYGHPLGEVAKARLEIMRATEDGFAIAEEDLRLRGGGEMLGTRQSGLPE---FRLADLA--RHGELLAAARDAAALILGRDPDLQS----PRGESLRVLLYLFERDAAVRTLRS 210
BLAST of mRNA_S-ischiensis_contig92.20942.1 vs. uniprot
Match: B8KLH5_9GAMM (ATP-dependent DNA helicase RecG n=1 Tax=gamma proteobacterium NOR5-3 TaxID=566466 RepID=B8KLH5_9GAMM) HSP 1 Score: 84.7 bits (208), Expect = 8.550e-16 Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 1
Query: 7 SHCVLLYGEGLGEEAGRRLEVVRSTTDGFALAEEDLRQRGPGEVLGLRQKGFIEGGAYKVADLREPQHMDLMLEAHEQAKRL 252
SHCVLLY LG+++ RL+V+R + DGF +AEEDLRQRGPGEVLG RQ G +E ++VA L P+H L+ E A+ L
Sbjct: 585 SHCVLLYQSPLGQQSRARLQVMRESNDGFYIAEEDLRQRGPGEVLGTRQTGLME---FRVARL--PEHEHLLDEVQSMAETL 661
BLAST of mRNA_S-ischiensis_contig92.20942.1 vs. uniprot
Match: A0A6J4F7X9_9PROT (ATP-dependent DNA helicase RecG n=1 Tax=Magnetospirillum sp. SS-4 TaxID=2681465 RepID=A0A6J4F7X9_9PROT) HSP 1 Score: 84.3 bits (207), Expect = 1.170e-15 Identity = 54/121 (44.63%), Postives = 75/121 (61.98%), Query Frame = 1
Query: 1 RKSHCVLLYGEGLGEEAGRRLEVVRSTTDGFALAEEDLRQRGPGEVLGLRQKGFIEGGAYKVADLREPQHMDLMLEAHEQAKRLLDELLRLRARVHASTGAEGRGLLEMWEAFAWVQGLRT 363
R+S C+LLYG LGE A RLE++RST DGF +AEEDLR RG GE+LG RQ G E +++ADL H +L+ A + ++ +L+ LR+ G R LL ++E A V+ LR+
Sbjct: 581 RESRCLLLYGHPLGEIAKARLEIMRSTEDGFVIAEEDLRLRGGGEMLGTRQSGLPE---FRLADLT--LHGELLAAARDDSRLILERDPDLRS----PRGEALRVLLYLFERDAAVRTLRS 692
BLAST of mRNA_S-ischiensis_contig92.20942.1 vs. uniprot
Match: A0A1Y6BRL6_9ALTE (ATP-dependent DNA helicase RecG n=1 Tax=Alteromonadaceae bacterium Bs31 TaxID=1304903 RepID=A0A1Y6BRL6_9ALTE) HSP 1 Score: 84.3 bits (207), Expect = 1.170e-15 Identity = 40/69 (57.97%), Postives = 51/69 (73.91%), Query Frame = 1
Query: 7 SHCVLLYGEGLGEEAGRRLEVVRSTTDGFALAEEDLRQRGPGEVLGLRQKGFIEGGAYKVADLREPQHM 213
SHCVLLYGE L E+A RL+V+R T DGF +AE DL+ RGPGE+LG RQ G ++ Y+VAD+ +HM
Sbjct: 595 SHCVLLYGEKLSEQARSRLQVLRETNDGFLVAERDLQLRGPGELLGTRQTGEMQ---YRVADMLRDEHM 660 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig92.20942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig92.20942.1 >prot_S-ischiensis_contig92.20942.1 ID=prot_S-ischiensis_contig92.20942.1|Name=mRNA_S-ischiensis_contig92.20942.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=185bp RKSHCVLLYGEGLGEEAGRRLEVVRSTTDGFALAEEDLRQRGPGEVLGLRback to top mRNA from alignment at S-ischiensis_contig92:327040..329688- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig92.20942.1 ID=mRNA_S-ischiensis_contig92.20942.1|Name=mRNA_S-ischiensis_contig92.20942.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2649bp|location=Sequence derived from alignment at S-ischiensis_contig92:327040..329688- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig92:327040..329688- >mRNA_S-ischiensis_contig92.20942.1 ID=mRNA_S-ischiensis_contig92.20942.1|Name=mRNA_S-ischiensis_contig92.20942.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1110bp|location=Sequence derived from alignment at S-ischiensis_contig92:327040..329688- (Schizocladia ischiensis KU_0333)back to top |