mRNA_S-ischiensis_contig91.20926.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig91.20926.1
Unique NamemRNA_S-ischiensis_contig91.20926.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig91.20926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig91contigS-ischiensis_contig91:478911..479413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size503
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig91.20926.1prot_S-ischiensis_contig91.20926.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig91 478940..479248 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817412.9316418-UTR-S-ischiensis_contig91:478910..4789391622817412.9316418-UTR-S-ischiensis_contig91:478910..478939Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 478911..478939 +
1695741095.9241765-UTR-S-ischiensis_contig91:478910..4789391695741095.9241765-UTR-S-ischiensis_contig91:478910..478939Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 478911..478939 +
1622817412.95363-UTR-S-ischiensis_contig91:479248..4794131622817412.95363-UTR-S-ischiensis_contig91:479248..479413Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 479249..479413 +
1695741095.9547582-UTR-S-ischiensis_contig91:479248..4794131695741095.9547582-UTR-S-ischiensis_contig91:479248..479413Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 479249..479413 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817412.9432228-CDS-S-ischiensis_contig91:478939..4792481622817412.9432228-CDS-S-ischiensis_contig91:478939..479248Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 478940..479248 +
1695741095.9391372-CDS-S-ischiensis_contig91:478939..4792481695741095.9391372-CDS-S-ischiensis_contig91:478939..479248Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 478940..479248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig91.20926.1

>prot_S-ischiensis_contig91.20926.1 ID=prot_S-ischiensis_contig91.20926.1|Name=mRNA_S-ischiensis_contig91.20926.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=103bp
MIQVVPHELLPDASLLGRPGDLGLRAAVVCETRTHCCHRCRRRRRRRRCH
WRMIQVVPHELLPEPCLLGRSGDLGLCAGIVCEALTHEKHWRWHCPRRCR
YL*
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mRNA from alignment at S-ischiensis_contig91:478911..479413+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig91.20926.1 ID=mRNA_S-ischiensis_contig91.20926.1|Name=mRNA_S-ischiensis_contig91.20926.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=503bp|location=Sequence derived from alignment at S-ischiensis_contig91:478911..479413+ (Schizocladia ischiensis KU_0333)
CCTGGCACCGCCACTGCCGCCACTAGCGGATGATCCAGGTGGTCCCACAC
GAGCTCTTGCCGGACGCCAGCCTCCTCGGCCGGCCGGGAGATCTCGGGCT
CCGTGCCGCCGTCGTATGCGAAACTCGGACTCACTGTTGCCACCGCTGCC
GCCGCCGCCGCCGCCGCCGCCGCTGCCACTGGCGGATGATCCAGGTGGTC
CCACACGAGCTCTTGCCTGAGCCCTGCCTCCTCGGCCGCTCGGGAGATCT
CGGCCTCTGTGCCGGCATCGTATGCGAAGCTCTGACACATGAGAAACACT
GGCGCTGGCACTGCCCCCGACGCTGTCGGTACTTGTAGCTCCCCAGCCGT
GGTGGTCTGTGCGCCTCCCCCCCCCACGTGGTGGTGGCGGCGGCGGCTCC
CGCCGACGCCCCCGTGACTTGCGCCGCTGATGATACCGCAGTTGCAGCGG
CTGCTGCAGTTGCCCCCCCTGCCGTCGCTGCTGCTGCTGCTGCCGCTGCA
GCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig91:478911..479413+

>mRNA_S-ischiensis_contig91.20926.1 ID=mRNA_S-ischiensis_contig91.20926.1|Name=mRNA_S-ischiensis_contig91.20926.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=618bp|location=Sequence derived from alignment at S-ischiensis_contig91:478911..479413+ (Schizocladia ischiensis KU_0333)
ATGATCCAGGTGGTCCCACACGAGCTCTTGCCGGACGCCAGCCTCCTCGG
CCGGCCGGGAGATCTCGGGCTCCGTGCCGCCGTCGTATGCGAAACTCGGA
CTCACTGTTGCCACCGCTGCCGCCGCCGCCGCCGCCGCCGCCGCTGCCAC
TGGCGGATGATCCAGGTGGTCCCACACGAGCTCTTGCCTGAGCCCTGCCT
CCTCGGCCGCTCGGGAGATCTCGGCCTCTGTGCCGGCATCGTATGCGAAG
CTCTGACACATGAGAAACACTGGCGCTGGCACTGCCCCCGACGCTGTCGG
TACTTGTAGATGATCCAGGTGGTCCCACACGAGCTCTTGCCGGACGCCAG
CCTCCTCGGCCGGCCGGGAGATCTCGGGCTCCGTGCCGCCGTCGTATGCG
AAACTCGGACTCACTGTTGCCACCGCTGCCGCCGCCGCCGCCGCCGCCGC
CGCTGCCACTGGCGGATGATCCAGGTGGTCCCACACGAGCTCTTGCCTGA
GCCCTGCCTCCTCGGCCGCTCGGGAGATCTCGGCCTCTGTGCCGGCATCG
TATGCGAAGCTCTGACACATGAGAAACACTGGCGCTGGCACTGCCCCCGA
CGCTGTCGGTACTTGTAG
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