mRNA_S-ischiensis_contig91.20921.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig91.20921.1
Unique NamemRNA_S-ischiensis_contig91.20921.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig91.20921.1 vs. uniprot
Match: A0A836CLT3_9STRA (Auxin efflux carrier n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLT3_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.710e-25
Identity = 45/80 (56.25%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:    7 VDPSTETGRTCKVCMSFGNTGTLPLLFLNALFRSRPD--LLRQGVAYVSFFLMGWSPTFWTIGYGALTSGVSPDKGDAAA 240
            ++P+TE GR  +VC +FGN+G LPLLF+NALFR+ PD  +L + +AY+SFFLMGWSP FWT+GY  LT+G+ P+  +  A
Sbjct:  101 IEPTTEEGREVQVCSAFGNSGILPLLFVNALFRAHPDPTVLPRAIAYISFFLMGWSPAFWTVGYRTLTTGIEPENEEEPA 180
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BLAST of mRNA_S-ischiensis_contig91.20921.1 vs. uniprot
Match: A0A6H5KMD6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMD6_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 5.130e-24
Identity = 45/72 (62.50%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:    7 VDPSTETGRTCKVCMSFGNTGTLPLLFLNALFRSRPDLLRQGVAYVSFFLMGWSPTFWTIGYGALTSGVSPD 222
            ++P TE GR  KVCM+F N+G LPL+FLNA+FR  P+LL +GVAY SF+LMGWSPTFWTIG   LT  +  D
Sbjct:  230 INPDTEAGREAKVCMAFQNSGILPLIFLNAMFRGSPELLSRGVAYASFYLMGWSPTFWTIGNNILTGHLHQD 301
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BLAST of mRNA_S-ischiensis_contig91.20921.1 vs. uniprot
Match: A0A4D9D5S5_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5S5_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 6.210e-17
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:    1 MGVDPSTETGRTCKVCMSFGNTGTLPLLFLNALFRSRPD--LLRQGVAYVSFFLMGWSPTFWTIGYGALTSGVSPDKGDAAAPGE 249
            +G++P +E GR  ++C +F N G LPLLF++ALF++ PD  L  + VA++SF+L+ WSP FW  GYG L        G    P E
Sbjct:  113 VGLNPFSEAGREVRICSTFANAGPLPLLFVDALFKNHPDPTLRTRAVAFISFYLLAWSPLFWNYGYGILVDKTEDTGGKKGQPME 197
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BLAST of mRNA_S-ischiensis_contig91.20921.1 vs. uniprot
Match: A0A7S1UII2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UII2_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 9.190e-16
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:    7 VDPSTETGRTCKVCMSFGNTGTLPLLFLNALFRSR---PDLLRQGVAYVSFFLMGWSPTFWTIGYGALTSGVSPDKG 228
            + P+++ GR  +V  +FGN+GTLPL+ L+ALFR+    P +L + VAYVS +L+GWSP FW++G   L  G+    G
Sbjct:   29 IKPTSQEGRELQVSSAFGNSGTLPLVLLDALFRAPYADPSVLPRSVAYVSLYLLGWSPLFWSVGRSILVGGIEGKDG 105
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BLAST of mRNA_S-ischiensis_contig91.20921.1 vs. uniprot
Match: A0A7S2EWC0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EWC0_TRICV)

HSP 1 Score: 79.3 bits (194), Expect = 2.180e-15
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:    4 GVDPSTETGRTCKVCMSFGNTGTLPLLFLNALFRSRPDLLRQGVAYVSFFLMGWSPTFWTIGYGAL 201
            G+D  +E GR   VC SFGN+G LPL+F  +LFR RPD   +  A VS +L GWSP FW  G G L
Sbjct:  113 GIDAHSEDGRGAAVCCSFGNSGVLPLIFCESLFRGRPDGAARSAANVSLYLAGWSPFFWAFGRGVL 178
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BLAST of mRNA_S-ischiensis_contig91.20921.1 vs. uniprot
Match: A0A8J6CA09_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CA09_DIALT)

HSP 1 Score: 76.6 bits (187), Expect = 1.730e-14
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:    1 MGVDPSTETGRTCKVCMSFGNTGTLPLLFLNALFRSRP----DLLRQGVAYVSFFLMGWSPTFWTIGYGALTSGVSPDKGDAAAPGE 249
            +G+ P+  + R    C +FGNTG LPL+   A+FRS P     +L +  +Y+SF+L+GWSP FW++G   LT       GD AA GE
Sbjct:  157 LGISPALRSSRRFVTCAAFGNTGVLPLVLAEAIFRSPPYADATVLPRAASYLSFYLLGWSPIFWSLGKSILTG-----DGDVAAAGE 238
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BLAST of mRNA_S-ischiensis_contig91.20921.1 vs. uniprot
Match: W7U1P2_9STRA (Membrane transporter n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1P2_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 8.670e-14
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:    7 VDPSTETGRTCKVCMSFGNTGTLPLLFLNALFR---SRPDLLRQGVAYVSFFLMGWSPTFWTIGYGALTSGVS 216
            +DP+++ G+   VC +F N+G LPLLF +A FR   + P L  + VAY+SF+L+ WSP FWT+G   L S  S
Sbjct:  209 LDPASDAGKELAVCSAFANSGPLPLLFADAFFRLHPTDPTLYPRAVAYISFYLVAWSPLFWTLGSTILGSSTS 281
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BLAST of mRNA_S-ischiensis_contig91.20921.1 vs. uniprot
Match: W7TA92_9STRA (Auxin efflux carrier-like protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TA92_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 8.680e-14
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:    1 MGVDPSTETGRTCKVCMSFGNTGTLPLLFLNALFRSRPD--LLRQGVAYVSFFLMGWSPTFWTIGYGALTSGVSP 219
            MG D ++  GR  +V  +FGN G  P+LF   L R+ PD  +L   ++Y+SF+L+GW+P FWT GY  L    +P
Sbjct:  200 MGADVNSAKGRQLRVLQTFGNGGVAPILFATVLLRNHPDPSVLPLAISYISFYLLGWTPIFWTYGYSLLVPAEAP 274
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BLAST of mRNA_S-ischiensis_contig91.20921.1 vs. uniprot
Match: A0A4D9CQA1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQA1_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 9.010e-14
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:    1 MGVDPSTETGRTCKVCMSFGNTGTLPLLFLNALFRSRPD--LLRQGVAYVSFFLMGWSPTFWTIGYGALTSGVSP 219
            MG D ++  GR  +V  +FGN G  P+LF   L R+ PD  +L   ++Y+SF+L+GW+P FWT GY  L    +P
Sbjct:  137 MGADVNSAKGRQLRVLQTFGNGGVAPILFATVLLRNHPDPSVLPLAISYISFYLLGWTPIFWTYGYSLLVPAEAP 211
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BLAST of mRNA_S-ischiensis_contig91.20921.1 vs. uniprot
Match: A0A6U3Q7N3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Q7N3_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.970e-13
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:    1 MGVDPSTETGRTCKVCMSFGNTGTLPLLFLNALFR--SRPDLLRQGVAYVSFFLMGWSPTFWTIGYGAL 201
            +G+D  T+ GR   VC SFGN+G +PL+F  +LFR  +  D + Q  A+VS +L+GWSP FW+ G   L
Sbjct:  110 LGIDNDTDDGRCTAVCCSFGNSGVIPLIFAESLFRQSANADYVDQATAFVSLYLVGWSPFFWSFGRSIL 178
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig91.20921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLT3_9STRA2.710e-2556.25Auxin efflux carrier n=1 Tax=Tribonema minus TaxID... [more]
A0A6H5KMD6_9PHAE5.130e-2462.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9D5S5_9STRA6.210e-1743.53Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S1UII2_9STRA9.190e-1645.45Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2EWC0_TRICV2.180e-1553.03Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A8J6CA09_DIALT1.730e-1442.53Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
W7U1P2_9STRA8.670e-1446.58Membrane transporter n=3 Tax=Monodopsidaceae TaxID... [more]
W7TA92_9STRA8.680e-1442.67Auxin efflux carrier-like protein n=2 Tax=Nannochl... [more]
A0A4D9CQA1_9STRA9.010e-1442.67Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A6U3Q7N3_9STRA1.970e-1346.38Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig91contigS-ischiensis_contig91:414515..417041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue2.5e-21
Seed eggNOG ortholog2880.D7G8U0
KEGG koko:K07088
EggNOG free text desc.auxin efflux carrier
EggNOG OGsCOG0679@1,KOG2722@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons3
Model size255
Cds size255
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig91.20921.1prot_S-ischiensis_contig91.20921.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig91 414515..417041 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817415.3725278-CDS-S-ischiensis_contig91:414514..4145561622817415.3725278-CDS-S-ischiensis_contig91:414514..414556Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 414515..414556 +
1695741097.8821723-CDS-S-ischiensis_contig91:414514..4145561695741097.8821723-CDS-S-ischiensis_contig91:414514..414556Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 414515..414556 +
1622817415.3861036-CDS-S-ischiensis_contig91:415948..4160851622817415.3861036-CDS-S-ischiensis_contig91:415948..416085Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 415949..416085 +
1695741097.896082-CDS-S-ischiensis_contig91:415948..4160851695741097.896082-CDS-S-ischiensis_contig91:415948..416085Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 415949..416085 +
1622817415.3975534-CDS-S-ischiensis_contig91:416965..4170411622817415.3975534-CDS-S-ischiensis_contig91:416965..417041Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 416966..417041 +
1695741097.9082973-CDS-S-ischiensis_contig91:416965..4170411695741097.9082973-CDS-S-ischiensis_contig91:416965..417041Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 416966..417041 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig91.20921.1

>prot_S-ischiensis_contig91.20921.1 ID=prot_S-ischiensis_contig91.20921.1|Name=mRNA_S-ischiensis_contig91.20921.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=85bp
MGVDPSTETGRTCKVCMSFGNTGTLPLLFLNALFRSRPDLLRQGVAYVSF
FLMGWSPTFWTIGYGALTSGVSPDKGDAAAPGEEE
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mRNA from alignment at S-ischiensis_contig91:414515..417041+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig91.20921.1 ID=mRNA_S-ischiensis_contig91.20921.1|Name=mRNA_S-ischiensis_contig91.20921.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2527bp|location=Sequence derived from alignment at S-ischiensis_contig91:414515..417041+ (Schizocladia ischiensis KU_0333)
ATGGGCGTGGACCCCTCCACGGAGACGGGAAGGACATGCAAGGCGTGTAC
TCGTACATATCCGGCTTCTCCCCCTCTCTGGTCCTGCAACTGCCGCTACC
CCCCCCCCCCCCCTccCCCCCCACGCAGATGATGTAATATGATGTGGAGA
CGGGAAGGACATGCAAGGCGTGTGCAGATCCGGCATCTCCCCCTCTCTGA
TCGGCCGCTCGCTCGCTCGTTCGCTCGGAATCGGCCGTTTGTTATTTTCG
TCTCATACTCCTGCTACAATGTATGCTTTTTGCCTTGTGCAGTACAAAAT
CAGGCGAAGACGACTTTTTCAACTAAAAAAGGCGCAAATTTCCGGACATC
TCCAGTTATGCGAGGAGTTTCTAACGCTTCTCCCTCTCTGGTGCTGCCGC
TACTCCCCCCCCCCCGGCTGATGATGTGATATGATGTGGAGTATAGCTTG
AGTGCAATAGAGTGAACATCACATCGAATCCCATCACTTGGTATTTGTGA
TGTGGTGTCATATGGCTCATGGGCGTGGACCCCTCCACGGAGACGGGAAG
GGCATGCACGGTGTGTGCAGTGTCAGAATATCTGCATCCATGATGTTTAT
GACGACACACACGGCATCTTGTCCCCTCATACAAGACTCTCCACAACCCC
TTGTAGCACTCTGTCTAGGAGAATCTCTCTACTGTAGCTCCCTGTACTAC
ACCTTAGGGATTGCTGCTACTTCTACCATTGTCACCGCACAGGCCCTCAG
GCCTTACTGCGGTCGCTGCCAAGCTTAACGGGGCTAAAGAACGGCGTACA
ACCATGAGGCGAGCTGTTTCAACATGCAGATCCGGGAGGAATTCTCCCCC
TCTCCGGTGCTGCCGCTACTCCCCCCGCCCCCCCTGATGATGCGATACTC
GCGTACTTCGAGTATGGTGTGGAGTAAAACGTGCCGTGCAATAGAGTGAA
CATCAGTCACATCGAATCCCATCACTTGGTATTTGCAAAGTGACTGGAAG
GACATGCAAGGCGTGTGTGCAGATCCAGCATCTCCCCCTCTCTAGTGCTG
CCGCTACTCCGCCCCCCCCCGCTGATCAGGTGATATGATGTGGAGTAGAA
CTTGCAGTGCGATAGAGTGGACGGCAATCACATCGAATCCCACCACTTGG
TATTTATGATGTGATGTGATGTGATGGCTTCTCCCCCTCTCTGCTGCCGC
TACTCCGCCGCCCCCCCGCCCCCCCCCCCGGGCTGATGATGTGATGTGAT
GTTTCAAACTTGCAGTGCGGTAGAGTGGACGTCAATCACATCGAATTCCA
TCACTTGGTATTTGCGATGTGATGTGATGTGATGGGTACTCTCCAAACCA
TGTACGAGTGCAAGGGTGCACAGAGTGACATGACATCGTGCCGTACCATG
CCGCACCCCCCCTCTCCCTGCCGCGGTACTCCAGGTGTGCATGTCCTTTG
GGAACACGGGCACCCTGCCCCTCCTCTTCCTGAACGCGCTTTTCCGCTCC
AGGCCTGACCTGCTGCGCCAGGGAGTGGCCTACGTCTCCTTCTTCCTCAT
GGGCTGGTCCCCCACATTCTGGTCAGTAATAATGCCTCCTTGTGCCCACA
GGCTATGTCGCGAGACCAAGCCAATTGGGGTGTACATGTACTGAGTATAT
ACTACTTGTATGTACAGTATAGGCACACACTTTACAGTACTGTAGCCACT
TGGCCTACGCCTCCGTCTTCCTCATGGGCTGGTCCTCCACATTCTGGTTA
GCAACGCCTCCTTGTACACATTCTGGTTAGAAAACGCCTCCTTGTACACT
TTCCGGTTGTAGCGCCTCCTTGCACACATTCTGGTCAGTAACGCCTCCTT
GTACACATTCTGGTCAGTAGCGCCTCCTTGTACACATTCTGGTCAGTAAC
GCGACCTTGCACACATTCTGGCTAGTACAATAACGCCGCCTTGTACACGT
TCTGGTCAGTGACGCCTCCTTGGGCCACAAGGCTGTGTCGTGAGACCAAG
CCGATTGGGGTGCATATACCGTATATGTATGCACCAAGTATTTTGTGCTG
TGGGTACTTCCTTCCAAGCATATAATTGTACTCGTACCATGTTCTACATA
TATTTATACTACTACTACTGTAGTATATATGGTATATACTGGCCTACGTC
TCCTTCTTCCTCGTGGGCTGGTCCCCCACATTCTGGTTTGTACCGCAATC
GTCGGAGAGATTTTGCCCCCACGGTCCAATTTTCGGGGGAATATTTCTAG
TCGGGAGGGTCCTGAATCATCCCGAACACTCTCGGAAAAGTTCCCCTGGG
CCCTGAGGGAGATATTCCGAGTTTTCCTTCGCGAATCCGACCAGTATTCG
GCGAGAAAGGGTCTCCCGAAATTTGGCATGGGGGGGCAAGATCTCTCCGA
CGATTACGGTGCGTTACTGACATGCTCCTTTGCCCCCGTCGCGCGTCACA
GGACCATTGGGTATGGCGCGCTCACGTCAGGCGTATCGCCTGACAAGGGA
GATGCTGCAGCACCGGGGGAGGAGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig91:414515..417041+

>mRNA_S-ischiensis_contig91.20921.1 ID=mRNA_S-ischiensis_contig91.20921.1|Name=mRNA_S-ischiensis_contig91.20921.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=510bp|location=Sequence derived from alignment at S-ischiensis_contig91:414515..417041+ (Schizocladia ischiensis KU_0333)
ATGGGCGTGGACCCCTCCACGGAGACGGGAAGGACATGCAAGATGGGCGT
GGACCCCTCCACGGAGACGGGAAGGACATGCAAGGTGTGCATGTCCTTTG
GGAACACGGGCACCCTGCCCCTCCTCTTCCTGAACGCGCTTTTCCGCTCC
AGGCCTGACCTGCTGCGCCAGGGAGTGGCCTACGTCTCCTTCTTCCTCAT
GGGCTGGTCCCCCACATTCTGGTGTGCATGTCCTTTGGGAACACGGGCAC
CCTGCCCCTCCTCTTCCTGAACGCGCTTTTCCGCTCCAGGCCTGACCTGC
TGCGCCAGGGAGTGGCCTACGTCTCCTTCTTCCTCATGGGCTGGTCCCCC
ACATTCTGGACCATTGGGTATGGCGCGCTCACGTCAGGCGTATCGCCTGA
CAAGGGAGATGCTGCAGCACCGGGGGAGGAGGAGGACCATTGGGTATGGC
GCGCTCACGTCAGGCGTATCGCCTGACAAGGGAGATGCTGCAGCACCGGG
GGAGGAGGAG
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