mRNA_S-ischiensis_contig91.20906.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig91.20906.1
Unique NamemRNA_S-ischiensis_contig91.20906.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig91.20906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig91contigS-ischiensis_contig91:235355..238677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size668
Cds size666
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig91.20906.1prot_S-ischiensis_contig91.20906.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig91 235355..238677 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817412.0670137-CDS-S-ischiensis_contig91:235354..2354711622817412.0670137-CDS-S-ischiensis_contig91:235354..235471Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 235355..235471 -
1695741095.4403536-CDS-S-ischiensis_contig91:235354..2354711695741095.4403536-CDS-S-ischiensis_contig91:235354..235471Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 235355..235471 -
1622817412.0811596-CDS-S-ischiensis_contig91:235668..2357691622817412.0811596-CDS-S-ischiensis_contig91:235668..235769Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 235669..235769 -
1695741095.452093-CDS-S-ischiensis_contig91:235668..2357691695741095.452093-CDS-S-ischiensis_contig91:235668..235769Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 235669..235769 -
1622817412.095812-CDS-S-ischiensis_contig91:236081..2364631622817412.095812-CDS-S-ischiensis_contig91:236081..236463Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 236082..236463 -
1695741095.4614716-CDS-S-ischiensis_contig91:236081..2364631695741095.4614716-CDS-S-ischiensis_contig91:236081..236463Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 236082..236463 -
1622817412.1098607-CDS-S-ischiensis_contig91:238611..2386771622817412.1098607-CDS-S-ischiensis_contig91:238611..238677Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 238612..238677 -
1695741095.4737716-CDS-S-ischiensis_contig91:238611..2386771695741095.4737716-CDS-S-ischiensis_contig91:238611..238677Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 238612..238677 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig91.20906.1

>prot_S-ischiensis_contig91.20906.1 ID=prot_S-ischiensis_contig91.20906.1|Name=mRNA_S-ischiensis_contig91.20906.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=222bp
GGGPELPGRHPGAPADRGLGTQPRHPEVTGWATNLLAVGGGVRAHNPSGL
PLNATTLGAGPTAAANGAGAAGGDVLVYENGATVVLDCVGGGSSSSPAPR
GQQQLPPRCSRWASDPTAVAAAEGVHHGGLGVVADASPSLANPSACSTPG
TVLGVASAGGLHHHGGRPAFPRPGSPEWAVPPQHGYRDSGPGPGPWAGQF
SSSGGVDPVRAGAVRGGHGDWR
back to top

mRNA from alignment at S-ischiensis_contig91:235355..238677-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig91.20906.1 ID=mRNA_S-ischiensis_contig91.20906.1|Name=mRNA_S-ischiensis_contig91.20906.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3323bp|location=Sequence derived from alignment at S-ischiensis_contig91:235355..238677- (Schizocladia ischiensis KU_0333)
GGCGGTGGGCCGGAGTTGCCAGGGCGGCACCCGGGTGCGCCAGCCGACCG
TGGATTGGGAACGCAGGTGAGGGCCCTCGTCGTTGCGACTCAACCTTTTA
CCCCGGGGGTCCGTGTAGTCATTGTGTTTTAGTGTGCAAGTCCAATTTGG
CAGGGGTAAAGGGGTTAAGGCCGAGCATGCACAGGGTGAATGATCCTCCT
CCTCCTCCTCCCCCCCCCCCCCCCCCGCCCCCCCTCCTCCCCCAAAACCA
GGGTTCTTGGCGCTATTCCTTGTTCATCTTGCCCGGCCCGGCAGTTGCGA
GCGGCACACGTGATCAGTGACGGAATATCTAAGCAAATCAACCGACATTA
TTTATTGGCGGTACTGATGTACGGGTATATATCTATCGATAGTCGATATT
CGATAGGTTGACGCACACTAAATCCAAGTACTTCGAAGTAGTTGCTTAGT
AGCGCCACCCACAAGATCAGTCAAGCCCGATAACTACTAGTATCTACTGA
TCGATATGCCGTCACTGCGTGACGCTGAGGCACACCTGCAGGCAGTTTCG
CAGGCCCTCTGGCACAGCTGTCTTGCCGTGCACTTGTGTGTACAAGTAAC
GGCGAACTCAACAACCGATCACCTGCTGTTCCCCCCTGCGCTTCCACCTC
CCCCTCCCCCTCAATTCTTTGCCCCCCCCCCAACCTCCTGTCTCCATGCT
ATGCCACCTTCATCGACCCTCCCTGGGTGACTGTCGCCGCACCCCCCCAC
CCAGTCCATCCACGTTAGCGCCGGACACTGGCATAACAAGGTGGAATGGT
CTAAGATTGGCACCACAAGTGTATATCGACAACTTGGGAACGGCGTTGAC
GTGGTCCACGTGCAAGCTATCGCACTGTTCGTCTCGGCCTGCTCTATCGG
AGCCCTTAGGCACTCAAATCGATGCGAGCAATATTTCGGGCTGCAGCCGC
GATTTCCCGTATAACGAGTAGTTACCAGTTAGCTTCCACTACTAAATCCT
AGATGTACGGTGGTTGACCAAATCGGGCGATCGAGGGCTCTATCGATTCG
TCTCGATGAGAGGAAACGATTCGCGGTGTTTTATTTTGCCAACGCTGCTT
GGTTCGCACATCGACCCTCCCTGGGTGACTGTCGCCGCACCCCCCCACCC
AGTCCATCCACGTTAGCGCCGGACACTGGCATAACAAGGTGGAATGGTCT
AAGATTGGCACCACAAGTGTATATCGACAACTTGGGAACGGCGTTGACGT
GGTCCACGTGCAAGCTATCGCACTGTTCGTCTCGGCCTGCTCTATCGGAG
CCCTTAGGCACTCAAATCGATGCGAGCAATATTTCGGGCTGCAGCCGCGA
TTTCCCGTATAACGAGTAGTTACCAGTTAGCTTCCACTACTAAATCCTAG
ATGTACGGTGGTTGACCAAATCGGGCGATCGAGGGCTCTATCGATTCGTC
TCGATGAGAGGAAACGATTCGCGGTGTTTTATTTTGCCAACGCTGCTTGG
TTCGCACAAATCGCCCGTAAAGCGCCGAATCGGTCAACTACTTGAGAAAT
GAACCGAAGCCGGTTGGGCGTCAAACTTGCTTAATTGCGCATTTCTGCCA
ACGATACGGACCCCGATGTTCTAATACCGATTCGAGGCCATCTCGTCAGC
TTTCGATTGCGCCATGTCAGATGTTGCGCCTCTCAGTCGTTGACGAGTTA
CCCGCATTCACTCGAGTTGTCCCGATATTGACTCAATACGTCAGCGCCCA
TAGCTCACCAACCACTGAGAGGCGCAAGGTCTTCGATGGTGCAATCGAAA
GCTTAGGACATGGGCTTCAATCGGTATTAGAAAGTCGCTGCCTGAATCGT
TGGCAGAATCGCGGAATTAAGCAAGATCGACATTTGTGCCAACCTTAGGC
GATTCCACCTTATGGTATAAGAGCATTCAATTCTTAAATGAAACAACTAC
CTACTAGTACGAGAACAGTCAATCGCACACACGTGCGATTGTACCTCGTT
ACTCCTACAATTTATATGAATCGCCACCGGACACCCGTCACTGGCGACAC
TCGCCGCCGCCGCCGCAACACAGGCAAGACTGATGTGATAATCACTACAG
TAATATAGCAACGCCCAATCCTTAACTGGGACAACTACAGTATGTACTAA
TGCGACAACAGTCAAGTCTCACACACGCGCGATTGTACCTCGTTGCAATT
TTTATGAATCACAGCCAAGGCACCCGGAAGTCACCGGGTGGGCAACAAAT
CTGCTCGCTGTGGGAGGCGGCGTTCGGGCCCACAACCCATCAGGGTTGCC
CCTGAACGCGACCACCCTCGGGGCGGGCCCCACCGCCGCTGCCAACGGCG
CCGGTGCCGCCGGCGGCGATGTCCTTGTCTACGAGAACGGGGCCACCGTC
GTCCTGGACTGCGTCGGGGGGGGCAGCAGCAGCAGCCCCGCCCCCCGGGG
GCAGCAGCAGCTTCCACCACGCTGCAGCCGGTGGGCGAGCGACCCAACCG
CCGTCGCCGCCGCAGAAGGCGTCCATCACGGTGGCCTGGGCGTGGTCGCG
GACGCCTCGCCCTCCTTGGCAAACCCCTCGGCCTGCAGCACGCCAGGTGA
TAACCACGGTACTACAAAAGTGCGATTTTTTTTTTTGCCCAAATAGTTTT
TTGCGATTGATGTCGAAAATTCTCGCCCAGATTGCGATCGGACACCGGCC
CAAATATCGAAAAACATACATAGCAAATATCGATGATGCCGAGCCGTGGG
GTTTCCACACCTTGACACGGTGTTTTGGCATCGAAGGCGCAAAAACTTGC
CCAAGTACTCATCGATATTGTCCCGGAAATATCGATTTGCTCGACCTGTG
GCCCCAAATTGCCCTTTTTTTTTTTAACGTCGCACTTTTGTACCATGGTT
AAACCCAGGGACCGTGCTGGGGGTGGCGTCCGCGGGGGGTTTGCATCACC
ATGGTGGGCGGCCCGCATTCCCCAGGCCGGGGTCGCCGGAGTGGGCTGTC
CCCCCCCAGGTAAGCATGGCACAAAACTGCGATTTGTTTTGCCCAAGTAC
TTGGTTTTTTGCGGTATCGAAAATAATTTTCGCCCAAATTGCGATCGAAG
ACCAGCCCAAATATACTATCGACAGAAATATCAATTTGCTCGACTTGCGG
CCTCAAATTGCCATTTTATTAATAACGTCGCACTTTTTTGCCGTGGTTCC
CGCCAGCATGGCTACCGTGACAGTGGGCCGGGCCCCGGGCCCTGGGCCGG
GCAATTCTCATCGTCTGGTGGTGTCGACCCTGTGCGGGCCGGCGCTGTTC
GGGGGGGGCATGGGGACTGGCGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig91:235355..238677-

>mRNA_S-ischiensis_contig91.20906.1 ID=mRNA_S-ischiensis_contig91.20906.1|Name=mRNA_S-ischiensis_contig91.20906.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1332bp|location=Sequence derived from alignment at S-ischiensis_contig91:235355..238677- (Schizocladia ischiensis KU_0333)
GGCGGTGGGCCGGAGTTGCCAGGGCGGCACCCGGGTGCGCCAGCCGACCG
TGGATTGGGAACGCAGGGCGGTGGGCCGGAGTTGCCAGGGCGGCACCCGG
GTGCGCCAGCCGACCGTGGATTGGGAACGCAGCCAAGGCACCCGGAAGTC
ACCGGGTGGGCAACAAATCTGCTCGCTGTGGGAGGCGGCGTTCGGGCCCA
CAACCCATCAGGGTTGCCCCTGAACGCGACCACCCTCGGGGCGGGCCCCA
CCGCCGCTGCCAACGGCGCCGGTGCCGCCGGCGGCGATGTCCTTGTCTAC
GAGAACGGGGCCACCGTCGTCCTGGACTGCGTCGGGGGGGGCAGCAGCAG
CAGCCCCGCCCCCCGGGGGCAGCAGCAGCTTCCACCACGCTGCAGCCGGT
GGGCGAGCGACCCAACCGCCGTCGCCGCCGCAGAAGGCGTCCATCACGGT
GGCCTGGGCGTGGTCGCGGACGCCTCGCCCTCCTTGGCAAACCCCTCGGC
CTGCAGCACGCCAGCCAAGGCACCCGGAAGTCACCGGGTGGGCAACAAAT
CTGCTCGCTGTGGGAGGCGGCGTTCGGGCCCACAACCCATCAGGGTTGCC
CCTGAACGCGACCACCCTCGGGGCGGGCCCCACCGCCGCTGCCAACGGCG
CCGGTGCCGCCGGCGGCGATGTCCTTGTCTACGAGAACGGGGCCACCGTC
GTCCTGGACTGCGTCGGGGGGGGCAGCAGCAGCAGCCCCGCCCCCCGGGG
GCAGCAGCAGCTTCCACCACGCTGCAGCCGGTGGGCGAGCGACCCAACCG
CCGTCGCCGCCGCAGAAGGCGTCCATCACGGTGGCCTGGGCGTGGTCGCG
GACGCCTCGCCCTCCTTGGCAAACCCCTCGGCCTGCAGCACGCCAGGGAC
CGTGCTGGGGGTGGCGTCCGCGGGGGGTTTGCATCACCATGGTGGGCGGC
CCGCATTCCCCAGGCCGGGGTCGCCGGAGTGGGCTGTCCCCCCCCAGGGA
CCGTGCTGGGGGTGGCGTCCGCGGGGGGTTTGCATCACCATGGTGGGCGG
CCCGCATTCCCCAGGCCGGGGTCGCCGGAGTGGGCTGTCCCCCCCCAGCA
TGGCTACCGTGACAGTGGGCCGGGCCCCGGGCCCTGGGCCGGGCAATTCT
CATCGTCTGGTGGTGTCGACCCTGTGCGGGCCGGCGCTGTTCGGGGGGGG
CATGGGGACTGGCGGCATGGCTACCGTGACAGTGGGCCGGGCCCCGGGCC
CTGGGCCGGGCAATTCTCATCGTCTGGTGGTGTCGACCCTGTGCGGGCCG
GCGCTGTTCGGGGGGGGCATGGGGACTGGCGG
back to top