mRNA_S-ischiensis_contig91.20901.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig91.20901.1 vs. uniprot
Match: A0A835Z986_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z986_9STRA) HSP 1 Score: 130 bits (327), Expect = 9.880e-29 Identity = 110/325 (33.85%), Postives = 151/325 (46.46%), Query Frame = 2
Query: 470 YTCTCPHTRARHVCTAHRE-GRDIWVPAAVADGSCKYLGHDFLAANPL-PPGANVLFAGNSHMRQVVEALLCMFQGAVSSRKVLWGEGARTKDDLVTVGPDTQCRKCIPFDSTAREKLVDLC-------GEMQFNCACSDDLLMVDFTNGASLAYQFLRGEANKTLAS-VTANFSTPLAEFDAVVFNHGNSPPRPVSEFLDEVEAFL-EDRPKAPPPVFFWTSTLFGRATEARNL--GFNPLAAEPLGRLHLNTIPVFDMHDMM-GIGEAPEASREHERVDLDHYCQPGPVSDVALVL-AHA--VW---------AALKGLPPAG 1366
Y C+CP +AR+ C +WVP A+ G C+ L H NPL PPGA VLFAGNSHMRQ+VE+ LC + V+ R V A +D+ IP + +D C G CSDD +NGA+++Y F+ E NKT+ + F T L ++D VV N GN+P +S F DEV + + KA +W S +AR L G P A++ R L+ I FD+ + G+ A R H D H+C P PV D++ L AH +W +AL G P+G
Sbjct: 70 YDCSCPLAKARYHCHEFNAVDGPVWVPRALVKGECRALPH-----NPLVPPGARVLFAGNSHMRQLVESGLCAHRHEVARRNV----SAGVLEDI-----------SIPCRGFRLKHYLDGCPYEPSVLGVAPGQLECSDDRATFTLSNGATVSYVFMHREVNKTIDQFIGPTFGTSLRDYDIVVANAGNAPDMLLSSFADEVGPLVTQGIIKALWVPLYWGSDALDEFRDARTLNNGNLPTASQ---RAALDAITFFDLRILTSGVASFTVAKRAHLSRD-GHFCMPSPVDDISDTLFAHVRYLWWHLALERGGSALDGWLPSG 370
BLAST of mRNA_S-ischiensis_contig91.20901.1 vs. uniprot
Match: D7G2P7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P7_ECTSI) HSP 1 Score: 114 bits (285), Expect = 6.880e-23 Identity = 84/271 (31.00%), Postives = 111/271 (40.96%), Query Frame = 2
Query: 545 PAAVADGSCKYLGHDFLAANPLPPGANVLFAGNSHMRQVVEALLCMFQGAVSSR---KVLWGEGARTKDDLVTVGPDTQCRKCIPFDSTAREKLVDLC---GEMQFNCACSDDLLMVDFTNGASLAYQFLRGEANKTLASVTANFSTPLAEFDAVVFNHGNSPPRPVSEFLDEVEAFLEDRPKAPPPVFFWTSTLFGRATEARNLGFNPLAAEPLGRLHLNTIPVFDMHDMMGIGEAPEASREHERVDLDHYCQPGPVSDVALVLAHAVWA 1339
P G C+ L PLPPG VLF GNSH+RQVVE ++C + ++ SR V+ GE +D LV D QCR C+ R L C + C C DD + +F NGA++ Y F E NK T + +DAVV N GN P VSE L E+ FWTS G L G +PV M + E+ H+C PGP +++ ++L WA
Sbjct: 156 PKWSTSGGCERRERSALQNEPLPPGFRVLFYGNSHLRQVVEGIVCAYSSSIRSRCLRVVVDGESLAQEDTLVD--EDLQCRSCVYSRKLRRTLLEHECISEDAKEEACRCDDDESVFEFDNGAAIHYHFAHKEENKRFEDALQYRGTEYSSYDAVVGNLGNDPRMEVSEVLRVANLLKEEG-----VPLFWTSAYEGEGDVGAWLPEEQALFWDSGA---RFVPVHRMVKSLKYLTKGVVEGENN----PHFCMPGPPNEIGILLLEMAWA 412
BLAST of mRNA_S-ischiensis_contig91.20901.1 vs. uniprot
Match: A0A6H5KUF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF6_9PHAE) HSP 1 Score: 114 bits (285), Expect = 1.150e-22 Identity = 88/302 (29.14%), Postives = 126/302 (41.72%), Query Frame = 2
Query: 449 SSSLAFDYTCTCPHTRARHVCTAHREGRDIWVPAAVADGSCKYLGHDFLAANPLPPGANVLFAGNSHMRQVVEALLCMFQGAVSSR--KVLWGEGARTKDDLVTVGPDTQCRKCIPFDSTAREKLVDLCGEMQFN---CACSDDLLMVDFTNGASLAYQFLRGEANKTLASVTANFSTPLAEFDAVVFNHGNSPPRPVSEFLDEVEAFLEDRPKAPPPVFFWTSTLFGRATEARNLGFNPLAAEPLGRLHLNTIPVFDMHDMMGIGEAPEASREHERVDLDHYCQPGPVSDVALVLAHAVWA 1339
SS +A + CTC +A + C G P G+C+ L PLPP VLF GNSH+RQVVE ++C + ++ SR +V+ G G+ +D + V D QCR C+ L C + C+C D+ + +F NGA++ Y F E NK T + +D VV N GN P VSE L E+ FWTS G L G +PV M + + E+ H+C PGP +++ ++L WA
Sbjct: 123 SSMVAPPFDCTCRTLKASYFCPNLGTGG---YPKWNTSGACERRERSALQNEPLPPAFRVLFYGNSHLRQVVEGIVCAYSTSIRSRCLRVVVGGGSLAPEDAL-VDEDLQCRGCVNSHKQRNMLLEHECISEEAKKEACSCDDNESVFEFDNGAAIHYHFAHKEENKRFEDALKYRGTEYSFYDVVVGNLGNDPRMEVSEVLRVANLLKEEG-----VTLFWTSAYEGEGDVGAWLPEEQALFWDSGA---RFVPVHRMVESLKYLTKGVVEGENN----PHFCMPGPPNEIGILLLEMAWA 408
BLAST of mRNA_S-ischiensis_contig91.20901.1 vs. uniprot
Match: A0A6H5KAG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG2_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 2.890e-17 Identity = 84/303 (27.72%), Postives = 125/303 (41.25%), Query Frame = 2
Query: 470 YTCTCPHTRARHVCTAHREG-RDIWVPAAVADGSCKYLGHDFLAAN--PLPPGANVLFAGNSHMRQVVEALLCMFQGAVSSRKVLWGEGARTKDDLVTVGP-DTQCRKCIPFDSTAREKLVDLC-------GEMQFNCACSDDLLMVDFTNGASLAYQFLRGEANKTLASVTA-NFSTPLAEFDAVVFNHGNSPPRPVSEFLDEVEAFLEDRPKAPPPVFFWTSTLFGRATEARNLGFNPLAAEP-LGRLHLNTIPVFDMHDMMGIGEAPEASREHERVDLDHYCQPGPVSDVALVLAHAVWA 1339
Y C C ++AR+ C G WVP AV G C+ + +++ P PP + VLF GNSHMRQ +EA+LC+FQ V S+++ + + P DT CR C + L C +NGA + + F + +K + A + L+ + AV N GN P LD A +E + P FFW ST G+ R +N E + VFD+ + G+ E + H+C PGP +V ++L +WA
Sbjct: 154 YGCDCAFSKARYFCPNLGSGVYPRWVPRAVTRGDCRSATREEMSSRGAPFPPDSKVLFYGNSHMRQTLEAILCLFQKDVVSKRLRFVSATNANETAYLEVPGDTPCRACSVWTFFKDTLLNSGCIGXXXXXXXXXXXXXXXXXXXXXXXSNGAVVHFYFANHDEDKRITDALAPHHKEDLSYYTAVFANPGNKPSVEADAVLD---AAVELQAAGVP--FFWLSTYEGKGDPQR---WNSRQRETDFWESGAKFVRVFDI--VQGLHSLTRKVVERTVENDPHFCMPGPPDEVGILLLKLLWA 446
BLAST of mRNA_S-ischiensis_contig91.20901.1 vs. uniprot
Match: A0A6V1L833_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1L833_HETAK) HSP 1 Score: 94.7 bits (234), Expect = 8.160e-17 Identity = 90/310 (29.03%), Postives = 140/310 (45.16%), Query Frame = 2
Query: 476 CTCPHTRARHVCTAHREGRDI---WVPAAVADGSCKYLGHDFLAANPLPPGANVLFAGNSHMRQVVEALLCMFQGAVSSRKVLWGEGA----RTKDDLVTVGPDTQCRKCIPFDSTAREKLVDLCGEMQFN-----CACSDDLLMVDFTNGASLAYQFLRGEANKTLASVTANFS--TPLAEFDAVVFNHGNSPPRPVSEFLDEVEAFLEDRPK----APPPVFFWTSTLFGRATEARNLGFNPLAAEPLGRLHL-NTIPVFDMHDMMGIGEAPEASREHERVDLD----HYCQPGPVSDVALVLAHAVW 1336
C+CPH + R+ C G+D+ ++P A+ G C++ ++L NPLP G+ L GNS++RQ++EA+LCMF +++S++V+ E R K +V VG T+CR P++ A+ L D C + Q N C D+L+ V F NGA L + + T+ + L FD ++ N V + E F+ + K P FW G N E L L + I VF H I + + R + + D H+C PG DVA+ L H ++
Sbjct: 110 CSCPHAKGRYHC----HGKDLQAYFLPTAIEKGLCRWHTVEYLKENPLPAGSKTLLFGNSYLRQLMEAVLCMFSDSIASKEVVLQEEGITRQRGKYPMVEVG-QTECRGG-PWEFNAQHFLYD-CPDSQKNQTPNVTECYDNLMKVSFKNGAELHFIY---SFESTIPYIPKQLPGVNSLQYFDVIMTNG-------VYANRMKAETFVMVKEKNGLDGKSPRLFWA-------------GLNENDYENAKDLFLASKIEVFKAHI---INRSQCSRRVGKILQQDAGDRHFCLPGVPDDVAISLLHFIY 386 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig91.20901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig91.20901.1 >prot_S-ischiensis_contig91.20901.1 ID=prot_S-ischiensis_contig91.20901.1|Name=mRNA_S-ischiensis_contig91.20901.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=431bp MARGRQPADSSRPWKPFVRMLVLATAAAATAECQKTVQAVGAAQRHLVHRback to top mRNA from alignment at S-ischiensis_contig91:189792..196340- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig91.20901.1 ID=mRNA_S-ischiensis_contig91.20901.1|Name=mRNA_S-ischiensis_contig91.20901.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6549bp|location=Sequence derived from alignment at S-ischiensis_contig91:189792..196340- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig91:189792..196340- >mRNA_S-ischiensis_contig91.20901.1 ID=mRNA_S-ischiensis_contig91.20901.1|Name=mRNA_S-ischiensis_contig91.20901.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2586bp|location=Sequence derived from alignment at S-ischiensis_contig91:189792..196340- (Schizocladia ischiensis KU_0333)back to top |