mRNA_S-ischiensis_contig91.20900.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig91.20900.1
Unique NamemRNA_S-ischiensis_contig91.20900.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig91.20900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig91contigS-ischiensis_contig91:180136..180701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size556
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig91.20900.1prot_S-ischiensis_contig91.20900.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig91 180136..180438 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817412.6688569-CDS-S-ischiensis_contig91:180135..1804381622817412.6688569-CDS-S-ischiensis_contig91:180135..180438Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 180136..180438 -
1695741095.8205445-CDS-S-ischiensis_contig91:180135..1804381695741095.8205445-CDS-S-ischiensis_contig91:180135..180438Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 180136..180438 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817412.691365-UTR-S-ischiensis_contig91:180438..1804451622817412.691365-UTR-S-ischiensis_contig91:180438..180445Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 180439..180445 -
1695741095.8302135-UTR-S-ischiensis_contig91:180438..1804451695741095.8302135-UTR-S-ischiensis_contig91:180438..180445Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 180439..180445 -
1622817412.7035298-UTR-S-ischiensis_contig91:180455..1807011622817412.7035298-UTR-S-ischiensis_contig91:180455..180701Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 180456..180701 -
1695741095.8395467-UTR-S-ischiensis_contig91:180455..1807011695741095.8395467-UTR-S-ischiensis_contig91:180455..180701Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 180456..180701 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig91.20900.1

>prot_S-ischiensis_contig91.20900.1 ID=prot_S-ischiensis_contig91.20900.1|Name=mRNA_S-ischiensis_contig91.20900.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=101bp
MHLAGTGAKTLGPVRLGNQLVYQGIQTAAHLHHLLVGQVSHHFVQGLTQF
FEPVHILEPRIAGTCRGIGAFISSIAVWVFVLLQKPSHVAPARSAGMPGS
*
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mRNA from alignment at S-ischiensis_contig91:180136..180701-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig91.20900.1 ID=mRNA_S-ischiensis_contig91.20900.1|Name=mRNA_S-ischiensis_contig91.20900.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=566bp|location=Sequence derived from alignment at S-ischiensis_contig91:180136..180701- (Schizocladia ischiensis KU_0333)
CTCTGTGCCTGTTGGAGCGGCAGACTACATGAACGCGCATGGATGCAGGT
CAGCGAGGGTATGCATGGGATACAGTTGCCTTTGTGCTGCAGTAACATGA
TGGGGAAGGGGTAGTGTTGTTGTACATGGACCCCGCCGCTCTCTTCTGGT
AGCCTGGGCGTTTAGGCTGCCATGAGCCAGGAATGATCCCTCTGCCTCGG
TGAAGTAGGGTAGAAGTCATATATTATGTCTCTGCCGCACCCGTTTGCCT
CCTCAGTTTGCCAATGCATTTAGCCGGGACTGGGGCCAAAACTTTGGGGC
CCGTCCGGCTGGGCAATCAGCTCGTCTACCAAGGCATCCAAACGGCGGCA
CATCTGCACCACCTGCTCGTAGGTCAGGTGTCGCACCATTTTGTCCAGGG
ACTGACTCAGTTCTTTGAACCCGTCCACATACTTGAGCCTAGAATTGCGG
GTACTTGTCGAGGCATCGGTGCGTTTATCTCCTCTATCGCAGTCTGGGTG
TTTGTGCTTTTGCAGAAACCATCCCATGTGGCCCCTGCGAGAAGCGCTGG
CATGCCGGGCTCCTGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig91:180136..180701-

>mRNA_S-ischiensis_contig91.20900.1 ID=mRNA_S-ischiensis_contig91.20900.1|Name=mRNA_S-ischiensis_contig91.20900.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=606bp|location=Sequence derived from alignment at S-ischiensis_contig91:180136..180701- (Schizocladia ischiensis KU_0333)
ATGCATTTAGCCGGGACTGGGGCCAAAACTTTGGGGCCCGTCCGGCTGGG
CAATCAGCTCGTCTACCAAGGCATCCAAACGGCGGCACATCTGCACCACC
TGCTCGTAGGTCAGGTGTCGCACCATTTTGTCCAGGGACTGACTCAGTTC
TTTGAACCCGTCCACATACTTGAGCCTAGAATTGCGGGTACTTGTCGAGG
CATCGGTGCGTTTATCTCCTCTATCGCAGTCTGGGTGTTTGTGCTTTTGC
AGAAACCATCCCATGTGGCCCCTGCGAGAAGCGCTGGCATGCCGGGCTCC
TGAATGCATTTAGCCGGGACTGGGGCCAAAACTTTGGGGCCCGTCCGGCT
GGGCAATCAGCTCGTCTACCAAGGCATCCAAACGGCGGCACATCTGCACC
ACCTGCTCGTAGGTCAGGTGTCGCACCATTTTGTCCAGGGACTGACTCAG
TTCTTTGAACCCGTCCACATACTTGAGCCTAGAATTGCGGGTACTTGTCG
AGGCATCGGTGCGTTTATCTCCTCTATCGCAGTCTGGGTGTTTGTGCTTT
TGCAGAAACCATCCCATGTGGCCCCTGCGAGAAGCGCTGGCATGCCGGGC
TCCTGA
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