mRNA_S-ischiensis_contig91.20899.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig91.20899.1
Unique NamemRNA_S-ischiensis_contig91.20899.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig91.20899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig91contigS-ischiensis_contig91:172373..173240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size868
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig91.20899.1prot_S-ischiensis_contig91.20899.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig91 172441..172944 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817412.6107104-UTR-S-ischiensis_contig91:172372..1724401622817412.6107104-UTR-S-ischiensis_contig91:172372..172440Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 172373..172440 +
1695741095.7784047-UTR-S-ischiensis_contig91:172372..1724401695741095.7784047-UTR-S-ischiensis_contig91:172372..172440Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 172373..172440 +
1622817412.6344547-UTR-S-ischiensis_contig91:172944..1732401622817412.6344547-UTR-S-ischiensis_contig91:172944..173240Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 172945..173240 +
1695741095.8099961-UTR-S-ischiensis_contig91:172944..1732401695741095.8099961-UTR-S-ischiensis_contig91:172944..173240Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 172945..173240 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817412.6220694-CDS-S-ischiensis_contig91:172440..1729441622817412.6220694-CDS-S-ischiensis_contig91:172440..172944Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 172441..172944 +
1695741095.798862-CDS-S-ischiensis_contig91:172440..1729441695741095.798862-CDS-S-ischiensis_contig91:172440..172944Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 172441..172944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig91.20899.1

>prot_S-ischiensis_contig91.20899.1 ID=prot_S-ischiensis_contig91.20899.1|Name=mRNA_S-ischiensis_contig91.20899.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=168bp
MTGSEGEGGAGEGGGSQAADSEGAVDIWNGDENDDLGAGGVEEHGKATGD
GSSNKAHAEGDRGVGELAGAGDSNHGDGEGGSGGGQGGQQGGGQCHHKRK
QKRSSRRHRHKSRKGGSGQPDLSGMGTPPDGTDGTNSSDSDDSHSGADSS
GQNEDTGAQCNTWGGCR*
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mRNA from alignment at S-ischiensis_contig91:172373..173240+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig91.20899.1 ID=mRNA_S-ischiensis_contig91.20899.1|Name=mRNA_S-ischiensis_contig91.20899.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=868bp|location=Sequence derived from alignment at S-ischiensis_contig91:172373..173240+ (Schizocladia ischiensis KU_0333)
CGGGCTCCGAACCATGGTACCGGCTCCACCATTGCCAGGATGCGGGGGGC
CTGGTCACTGGTGAGAACATGACAGGCAGCGAGGGCGAGGGGGGCGCGGG
GGAAGGAGGCGGGAGCCAGGCCGCTGATAGTGAGGGCGCGGTTGACATCT
GGAATGGCGATGAAAATGATGATCTAGGGGCAGGGGGCGTGGAGGAGCAT
GGCAAGGCCACTGGCGATGGGAGCTCAAACAAGGCACACGCGGAGGGTGA
CCGCGGGGTGGGAGAATTAGCGGGTGCAGGTGACTCCAACCACGGTGATG
GCGAGGGTGGAAGTGGGGGCGGGCAAGGCGGGCAGCAGGGCGGGGGACAA
TGTCACCACAAGCGCAAACAGAAGAGGAGCAGCCGCAGGCACCGTCACAA
GTCCCGCAAAGGCGGCTCTGGGCAGCCAGATTTGAGTGGGATGGGCACCC
CCCCGGATGGGACGGATGGGACCAATTCGTCCGACTCGGATGACTCTCAC
TCGGGAGCGGACAGTAGCGGACAGAACGAAGACACTGGTGCTCAGTGCAA
CACCTGGGGAGGGTGCAGGTGATTCCTTGGGACGTGCTCGAGTAGATATC
ATACTTCCAGACGTAGTCACGTCATGACTGTGCCATGAATTGCTACGAAA
ATTATGACAGCAAGTGCAGTATTGCTTTCCAAAGTGCTAAGCTTATACGA
AGTACATGGTACGCTACGAAAAACGCACATAAATTGCTTTGAAGTTTTTT
GTAAGGCACGTAGTAAACGCACTCTGTCCTGCGCAGTAACATACACTGCA
CAGATGGCTTACGCACAGTAGAGCAATGTAACCTGCACATGCACATGGTA
CTTGCACACAGTAGTAGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig91:172373..173240+

>mRNA_S-ischiensis_contig91.20899.1 ID=mRNA_S-ischiensis_contig91.20899.1|Name=mRNA_S-ischiensis_contig91.20899.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1008bp|location=Sequence derived from alignment at S-ischiensis_contig91:172373..173240+ (Schizocladia ischiensis KU_0333)
ATGACAGGCAGCGAGGGCGAGGGGGGCGCGGGGGAAGGAGGCGGGAGCCA
GGCCGCTGATAGTGAGGGCGCGGTTGACATCTGGAATGGCGATGAAAATG
ATGATCTAGGGGCAGGGGGCGTGGAGGAGCATGGCAAGGCCACTGGCGAT
GGGAGCTCAAACAAGGCACACGCGGAGGGTGACCGCGGGGTGGGAGAATT
AGCGGGTGCAGGTGACTCCAACCACGGTGATGGCGAGGGTGGAAGTGGGG
GCGGGCAAGGCGGGCAGCAGGGCGGGGGACAATGTCACCACAAGCGCAAA
CAGAAGAGGAGCAGCCGCAGGCACCGTCACAAGTCCCGCAAAGGCGGCTC
TGGGCAGCCAGATTTGAGTGGGATGGGCACCCCCCCGGATGGGACGGATG
GGACCAATTCGTCCGACTCGGATGACTCTCACTCGGGAGCGGACAGTAGC
GGACAGAACGAAGACACTGGTGCTCAGTGCAACACCTGGGGAGGGTGCAG
GTGAATGACAGGCAGCGAGGGCGAGGGGGGCGCGGGGGAAGGAGGCGGGA
GCCAGGCCGCTGATAGTGAGGGCGCGGTTGACATCTGGAATGGCGATGAA
AATGATGATCTAGGGGCAGGGGGCGTGGAGGAGCATGGCAAGGCCACTGG
CGATGGGAGCTCAAACAAGGCACACGCGGAGGGTGACCGCGGGGTGGGAG
AATTAGCGGGTGCAGGTGACTCCAACCACGGTGATGGCGAGGGTGGAAGT
GGGGGCGGGCAAGGCGGGCAGCAGGGCGGGGGACAATGTCACCACAAGCG
CAAACAGAAGAGGAGCAGCCGCAGGCACCGTCACAAGTCCCGCAAAGGCG
GCTCTGGGCAGCCAGATTTGAGTGGGATGGGCACCCCCCCGGATGGGACG
GATGGGACCAATTCGTCCGACTCGGATGACTCTCACTCGGGAGCGGACAG
TAGCGGACAGAACGAAGACACTGGTGCTCAGTGCAACACCTGGGGAGGGT
GCAGGTGA
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