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Homology
BLAST of mRNA_S-ischiensis_contig91.20898.1 vs. uniprot
Match: D7FLA3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLA3_ECTSI) HSP 1 Score: 171 bits (432), Expect = 1.350e-46 Identity = 80/169 (47.34%), Postives = 122/169 (72.19%), Query Frame = 2
Query: 2 YPRAPTWQVASMKYKSVSLNL-DFTTNARIEMGLEVFNANYMPVTMIGMSMMMQHDDMHGDIATFGVVSVLGEGPYTLPARGSKIIESELKVEELPMGMGAQMAAELKRNNGTLITRALAIMDIKVLVTSVVVEAECVQHIQADVFPMVITKVACDYYYKQIRVPMLPP 505
+PRAPTWQ+ MKY+ +S+N+ + +I+MGLEVFN NY+P T+ G+ M M H+D+ G+ A FGVV+ GE LPARGS +++++++V LP M +A ++ + G +++RA A MD+KV+ +++EA+CVQH+QADVFP+ I ++ C YYYK +RVP+LPP
Sbjct: 21 FPRAPTWQIVDMKYRGLSMNIASIGVDMKIDMGLEVFNPNYVPATLKGIVMTMFHEDLGGEEAPFGVVTFAGENAARLPARGSAVVQAQMEVVSLPTSMAMGIAKDVA-DGGVIVSRASAFMDVKVMGGDILIEADCVQHMQADVFPIKINEIDCKYYYKNVRVPVLPP 188
BLAST of mRNA_S-ischiensis_contig91.20898.1 vs. uniprot
Match: A0A836CLA5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLA5_9STRA) HSP 1 Score: 125 bits (313), Expect = 1.310e-29 Identity = 70/169 (41.42%), Postives = 98/169 (57.99%), Query Frame = 2
Query: 2 YPRAPTWQVASMKYKSVSLNLDFTTNARIEMGLEVFNANYMPVTMIGMSMMMQHDDMHGDIATFGVVSVLGEGPYTLPARGSKIIESELKVEELPMGMGAQMAAELKRNNGTLITRALAIMDIKVL--VTSVVVEAECVQHIQADVFPMVITKVACDYYYKQIRVPMLP 502
+PRAPTWQ+ KY SVS N DFT A +E+ LE++N N + + + + + H D G F + V G+ + LPARGS + ++ L M +A + N GTL+TRA + MD+ VL +EAECVQH++AD FPM +T + C YY + RVPMLP
Sbjct: 20 FPRAPTWQIRGQKYTSVSFNYDFTMAAEMELELELYNDNLLSAHVNAIELEVLHRDAWGVERPFARIHVAGD--FALPARGSVRRAGTMVMDALAPAMAGALARDAAANGGTLVTRAHSTMDVSVLGGAARARLEAECVQHLRADAFPMEVTYIDCRYYMGRHRVPMLP 186
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-15_004890.1 |
| Exons | 5 |
| Model size | 1657 |
| Cds size | 474 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622817414.148679-UTR-S-ischiensis_contig91:159251..159276 | 1622817414.148679-UTR-S-ischiensis_contig91:159251..159276 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig91 159252..159276 + |
| 1695741096.9476984-UTR-S-ischiensis_contig91:159251..159276 | 1695741096.9476984-UTR-S-ischiensis_contig91:159251..159276 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig91 159252..159276 + |
| 1622817414.167111-UTR-S-ischiensis_contig91:160099..160108 | 1622817414.167111-UTR-S-ischiensis_contig91:160099..160108 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig91 160100..160108 + |
| 1695741096.9675996-UTR-S-ischiensis_contig91:160099..160108 | 1695741096.9675996-UTR-S-ischiensis_contig91:160099..160108 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig91 160100..160108 + |
| 1622817414.2249205-UTR-S-ischiensis_contig91:164118..165267 | 1622817414.2249205-UTR-S-ischiensis_contig91:164118..165267 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig91 164119..165267 + |
| 1695741097.027203-UTR-S-ischiensis_contig91:164118..165267 | 1695741097.027203-UTR-S-ischiensis_contig91:164118..165267 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig91 164119..165267 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622817414.1795585-CDS-S-ischiensis_contig91:160108..160183 | 1622817414.1795585-CDS-S-ischiensis_contig91:160108..160183 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig91 160109..160183 + |
| 1695741096.9829843-CDS-S-ischiensis_contig91:160108..160183 | 1695741096.9829843-CDS-S-ischiensis_contig91:160108..160183 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig91 160109..160183 + |
| 1622817414.1909504-CDS-S-ischiensis_contig91:160611..160767 | 1622817414.1909504-CDS-S-ischiensis_contig91:160611..160767 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig91 160612..160767 + |
| 1695741096.9944131-CDS-S-ischiensis_contig91:160611..160767 | 1695741096.9944131-CDS-S-ischiensis_contig91:160611..160767 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig91 160612..160767 + |
| 1622817414.2023532-CDS-S-ischiensis_contig91:162714..162822 | 1622817414.2023532-CDS-S-ischiensis_contig91:162714..162822 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig91 162715..162822 + |
| 1695741097.005931-CDS-S-ischiensis_contig91:162714..162822 | 1695741097.005931-CDS-S-ischiensis_contig91:162714..162822 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig91 162715..162822 + |
| 1622817414.2137556-CDS-S-ischiensis_contig91:163983..164118 | 1622817414.2137556-CDS-S-ischiensis_contig91:163983..164118 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig91 163984..164118 + |
| 1695741097.0170586-CDS-S-ischiensis_contig91:163983..164118 | 1695741097.0170586-CDS-S-ischiensis_contig91:163983..164118 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig91 163984..164118 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig91.20898.1 >prot_S-ischiensis_contig91.20898.1 ID=prot_S-ischiensis_contig91.20898.1|Name=mRNA_S-ischiensis_contig91.20898.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=158bp
MKYKSVSLNLDFTTNARIEMGLEVFNANYMPVTMIGMSMMMQHDDMHGDI ATFGVVSVLGEGPYTLPARGSKIIESELKVEELPMGMGAQMAAELKRNNG TLITRALAIMDIKVLVTSVVVEAECVQHIQADVFPMVITKVACDYYYKQI RVPMLPP* back to topmRNA from alignment at S-ischiensis_contig91:159252..165267+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig91.20898.1 ID=mRNA_S-ischiensis_contig91.20898.1|Name=mRNA_S-ischiensis_contig91.20898.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6016bp|location=Sequence derived from alignment at S-ischiensis_contig91:159252..165267+ (Schizocladia ischiensis KU_0333) CTACCCCAGAGCTCCAACATGGCAGGTGCGATCTTTCGAGCATGCACACG
CACAGGTTGCTGCCCGTTTACTGCAACCGCGTCCGCCCACACCTTTAGGG
CAAGGCAGCAGCCAGGCGGGGTACACCCCTTTGTCCGAGACGTTCCCTGA
CATGGCCTAGTGGTAGTCGGTGCAGGAGCAATTGCCTCGGGGCGGAGGCT
GGCAGCACTGCCGTTCGGGGGGGTTCAGGGGCAGCCATGGCCAAGACCGC
TGTACATGCCCAAAGAACCCCCATGAAGCCGCACATCCGTAGTAAGCGCC
CTTGCTTGTTGGCGGGCACTCAGTGATGGCGTTTGCATTGTGGTAGGTGG
GTGAGCTTGCTCAGCCTGCCTTGCAGAACTGCAAAACAGTGAGCTCCGCA
TTCCCCAAGGTTGATTGCGCCACTTCAATGCCGCTACAATGCAGGTTGGA
CCACTCATACGGCTCTCTTTTTCGACAAGCCTGCACATTGCAACCCTGTT
CACGTGCCAGGGCCTCCTCCCCTCCCCTCCCCACCCCCTCCCCACCCCCC
CCCACCCCCCCCGTGCCCCCTGCTTCGTCTACTACTTTTCTCTCCCGGCA
GTACTGTACTGTAGTAGCAACAGTGTCGGGGGCAACATCTCTTCCTTCAG
GCAGTGACATGCACATGTACTGCCATGCATGTGCCTCCACTTTGCCATGT
TGCTTTCCCTCCGTCTCCCTTCCTGCCCTCAAGGGCAGCACGGGAGGCTC
CCCTAGCTTGTCCCCGCCGTTCCTTAGCGACAAGTGCACCTGCTTCCCCT
TGCCCTCCCTGCCTGATCGCCTCTCTCCCTTGCATGGCGTTGCCGCAGGT
AGCGTCCATGAAGTATAAGAGCGTCTCCCTGAACTTGGACTTCACCACCA
ACGCCAGGATTGAGATGGGGCTCGAAGTTTTCGTGAGTTTCTCGGGCGTG
GGTGGCCCCTACCATGACCACACTGACTGGTGGAGCGTGACACATGCAGG
ACACCTGTGCTATGGAAGTACTACGTGAGAATATCGCTGTCACAGCAATC
ACGGCTTTTAATCAGGGGCCGAGTAGGCATGAAACCCCTGGGGGGAATTG
CACCTACGCGAGTATGCCTCCAAAGTTGTTTGAACCCCCAAGCGTTCCCT
GTATGTTACTACAGTACTAATCATACAGAAATCATGCTAGAGTACATGGC
TGAGAAACATCGTCGTTACCTGATTGTCATTCTCGGGATCACGGTATCAA
GGATGCGCTCCCCCCCATCCGTCCCTCTCCCTCCCTGTCGGCGCCATGCT
GTGTCTGACTCCCCTCACCTGCCCCCCACATATCCTCCGTATACGTCCCG
AGCTTTGCAGAATGCCAACTACATGCCCGTGACGATGATCGGCATGAGCA
TGATGATGCAGCACGACGACATGCATGGAGACATAGCCACCTTTGGTGTG
GTTAGCGTGCTGGGAGAAGGGCCCTACACATTGCCGGCCCGCGGGAGCAA
GATTATTGAGTCTGAGGTGAGGCTACCAGACATGGGATAATATATATGTA
CTGTACTCACGTGGTGCTTGCCGTCGTCCCGAGACCATGGGATAATATAT
ATACCATGTACTTGAGCTCATGTTTTGCTGACCGTAGTCCCGAGGCCTTT
GGTACGTACTTCGAAGTACCGGCATATCGACTGTGCATAGCCCTTTTGTG
TGGAAAGAGAAGCAAGTGGAAAGTAGAGGTGAACTTTATGGAGTCTGAGA
TGAGGCTACTAGCCATGGGATAATACATACCATGTACTCGAGCACTCATG
TTTTGCTGACCGTAGTCCCGAGGCCTTTGGTATATACTTCCAAGTACCGG
TATATCGACTATGTATTGCCCTTTTGTGTGGAAAGAGAAGGAGCGAGTGG
AAAGTAGAGGTGACCCTACTTTTGCGAGTTCTCTGTGCGATGTGAGTGCA
CCGATGATGGTTTCATGCATGGGCCTACGACCTAGCGATGCTGCTGGGAG
AGGGGTCTCCCTACTGTACTTCCCGTAAAGGAAGTGGAATATCGAACCCC
TTTCGGGACAACCGGCGGGCAATTTTTTTTCTCGCCGGATGGTTTTTCGA
TCGAATTGAAGACCCTCGGAATGTATAGGCCTCAAAGGCTTTCATTCCAA
AGGTTTTCGATGTGACCAAAAACCGAACCGGAGAGAAAAAATTGCCCGCC
GGTTGTCCCGAAGGGGTTTGATATTCCACTTCCCCTACATTTCGCTTGTG
CGGCCCTTGGGGGCAAGGTCATCCACCCCAGTTCGAGGTGTGGTAGAAAA
CCCGGGTTACCATTCATTGGCCTTGAGGTTGGTGTGCACTGTGTCTACTT
TGGTAGACAAGTAGGCAAGTTCCGGACCCCGTCCCAAACTTGGAGCCTCA
TCAGAAGACTTATCCCTTACTCCACTTGCAGGGCACACACACAGAGGCAG
AGAACGAATAACAGGGGACGGAGGCGGGGGACTCTGATGTGATGTGATGT
GATGTGTACTCATGTATACTGTACTGTATTTTGACATACATTACATTTCA
TTGGCGAACAACAGGGGCAGAGAACGAAGAGCAGGGGACGGAAGAAGGGG
GGCTTCTCTGTTGCCCCGCATTAGGGCATAGTTTGCACACGTTCAAGCAG
CGAAGCAGCAGAAGAAACAGTGAGCTACTGTACTGCAGTTCTGCCGCGGC
TTTCAAGCGTAATCCTGTTACCTGCTTGGGGGTTATTGTCTTTGTATTGC
GACTGTACTACTACTACCTGCTCCGTCTCGCACGAGGCGTGGGGTCAATG
GTCTCGGGACTACGGCAAGCACCACGTGAGTGCATATACTACTACAGTAG
TAGTAGTGGGCCCCTCTCCCTTCCTGTACAGCGGCATGGTTGCACTGCAG
TACCCTTACTGTACTGTAGTACGGCACAGTACAGTAAATACAGTGCACGC
ACATGTACAGACGCACAAACAGTACAGTGTGTGTGTACTCACGTTGGACA
GGAGACACTCCGCCCTGTGCATGCCACCGACCGTCGGCCCAGTACACTAC
TTGCTGGACCGCCGGCCAGCCCTCGCAGGGTAGCCCTTCGGCCATTGGCC
ACGAGTCCCTAACCCGCCGGGACGGAGCATACCGGGTTCTCACCAGGCGA
CTACAGTACAGACGTAGTTGCACGCAGTGTGGCCAACGTGGGATTCCATC
ACGTACAAGAACGGCGCGTGAGGGTTGAACGTGGCCTGGAACTTTAATGT
ACACTTCAAAGCATGTCCGCGGAAACAGTACTCTCAATACTGTGCACTGC
TCTCAGGTGCTCTACTTCAAAGTCGTACATGTGCTCGAGTACGACATATA
CACTCATGCAGTAGTACCTATTCACGTGTGCTATGGAAACACTTTGAGAT
CCGAGCGCTTCCTTGACACAACTTCTTCTATGCTCTTCTCTTCTCCCCAC
ACCGGCCTTCCAGTTGAAAGTGGAGGAGCTACCCATGGGCATGGGGGCGC
AGATGGCGGCAGAACTGAAGCGGAATAACGGGACCTTGATAACGCGCGCT
CTCGCCATCATGGATATCAAGGTAAGGGTGCTGCCTCGATTTAACCATCG
CCACCAGCACCAGCACAACAGCCACCACCGCCTCTGCCGCCACCACCACC
ACCACTGCACCTAGTACTGCACCTCCTCCACCACCAACACCATCACCAAT
GGTACCACCACCGTCACCACCACCACCACCACCACCACCGCCATCACCAC
CACCGCCGCCACCACCACCACCACCACCACCACCATTGTCACCACCATCC
CCCACGACCGACACCTCTGTACTTAGCGTGGTCATGTGTATGGAGGTAAA
ATGGTTGCCACAACAGATTCGTTTGTTGTACACACCTCACTCTTGTCACG
TGCGAGCACAACACAATACAATAGACAATAGCCCATCGTTGCAGGGCGGT
GACGGCCAAGGACAAAGGCACCAGCAGGGGAGCAGGCCTTTGGGTGCTAA
CGCCTAGCAGATTGATGCGCGGGCGCTTGTCTGAGCCCTTGGTGCCCAAT
TAGGTGTGCTTGGAAGTGCGTGTTGGCACTGCAGCACGTACTGCAGAGCT
CTACACGTTCGCAAAGAATGGCGTGGAGGTTTGCACTTCCAAGTAGAAGT
AGACTACTCTTCTCTGCTTGGAAGTACTATGAGTACTCCAACTACATAGT
CAGTGTAAAGTACCAGTACTTGCACTCAGTGCGAACTGCTTCCAAGCTAT
CGAGCACAAGCCGTTGCCACGCGTGTTGCAGCTGCAGTGCCCAGCCCGGA
ACAGAAGCTCCGCCTTTTGTTCAACCTCCCCACTTGAAGTATGTATTGTG
CTTGGGGTGGCTTGCTGGGCTTGTGTCTAGTCGGGTAAACCGAATTCCAT
GCTCTGGAAGCGACCTGACCTGACACGAAACGGTGCCTCTGACTACAGCT
GTGCATCCCTCGCCCCTGCTGCTGTAGAGCTCTACTGATACGGCCCAACC
AAAGGTTTTCTCAAGCACGGCCTGGTCGGTGCAAACCCGGCATGCTCTGT
CCCGGCCTATTTGGGATGCGAGAGTCCATGGCTAAATAGCTACTCCTGTC
TGAGGGCAAACCCGAAGTTTCGACTTAGGGCTGTCGGGCATTGCATGCAA
GGTTATTTCGCAATACCAGCCAATGAGTACGTATACCCATGTATATGGCT
GGACCCATCGTGCACGCTGCCACCCCGGGCAGGTGCTGGTGACCTCGGTG
GTGGTGGAGGCGGAGTGCGTGCAGCACATCCAGGCCGACGTGTTTCCCAT
GGTTATCACCAAGGTGGCCTGCGACTACTACTACAAGCAAATACGCGTGC
CCATGCTGCCGCCCTGAGGGGCGGGCAGCGTGAAGAGCATCGCACAGACC
TCAGGGTGCAAGCTTAGGCGTTAGAGGGCCATGGTATAGTGCCGTAATCG
TCGGAGAGATTTTGCCCCGGCGGGCCAAGTTGTGGGGGAGTATTGCTAGC
CGGGAAGCTTTTGAATTGTCCCCAAAACTCTCGGAAAAGTTCCCCCAGGT
CCCGAAGGCCGAGTTTTCCTTCTCGAATCCGACCAGTATTCGGCGAGAAA
AGTTCTTTCGAAAATTAGCATGGGGGAGGCAAGATCTCTCCGACGATTAC
GGTAGCATACGCTACCCCACACACTCCTTCCCTGGCGAGCTAAGGTGGGG
CTGCTGTTGAGGTCTTTAAGTGACGTGGTCTTGCACCTTGCCCTGCGTTG
TTCCTGTTAGTACTACCGTAGTATGAGTATGGTTTGGTTATTGAAGGGCA
TGTACGAGTATTGCTTCAAAGCGAGATGTACTCTATTGTTACAGCACGCG
TACAGTACAAGGCACAGTACAGTAGGGAGGGATTATTGTACAGTACCGCT
GACCGAGCAGTATCCCATCGTCCCCGAAGGTTGAAATTGACCGTTCTATG
AAAGCGCCTCCGACTTTGCCTGGGGTCCAAGTATCTTTTGAAGGAAAAAA
GCCTGCGATTACCTACAGCGTGTTTGGCGGCGGCAATTGTAGATGTTCTT
TGGCTACTGAGCTCTCTAGGCTTGCCAGATGGGGAGAAGCTTGTACTACT
ATTCCTGCTACGTAGTACAATTGCAATAGCGTAGACACTACTACCACTGC
TACGTACAGTAGTACGATTGCACTACAGTAGAGTAGATGCAGGTGCTGTG
CAACCACTGCTGGCCTGGCGGTTGGAGCAGGGCGACAGCGGGCTTTCATG
ACAGCAATCTTGGTTGACTCAGAGCCTCACTGTCTTATGTACAAGGTATA
CCGGAGCACAGCACGAGTTCCCGTGTGCTACGGTGCCGTAAGTAGCGTTC
GAGTCCAAGTCAAGAGCAGTGGTATCAGTACGGCGTAGAGTTATTCTATA
GACATTGGAGTTCCGTGGGCCCATAGCACAATCATGTCATGTTGGAAGTT
CTGGGCTACGTTTACGATGTCGCACTGCACATGGTAAACCAAAAATCAAC
ACCATCTGCTTGGCAC back to topCoding sequence (CDS) from alignment at S-ischiensis_contig91:159252..165267+ >mRNA_S-ischiensis_contig91.20898.1 ID=mRNA_S-ischiensis_contig91.20898.1|Name=mRNA_S-ischiensis_contig91.20898.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=948bp|location=Sequence derived from alignment at S-ischiensis_contig91:159252..165267+ (Schizocladia ischiensis KU_0333) ATGAAGTATAAGAGCGTCTCCCTGAACTTGGACTTCACCACCAACGCCAG GATTGAGATGGGGCTCGAAGTTTTCATGAAGTATAAGAGCGTCTCCCTGA ACTTGGACTTCACCACCAACGCCAGGATTGAGATGGGGCTCGAAGTTTTC AATGCCAACTACATGCCCGTGACGATGATCGGCATGAGCATGATGATGCA GCACGACGACATGCATGGAGACATAGCCACCTTTGGTGTGGTTAGCGTGC TGGGAGAAGGGCCCTACACATTGCCGGCCCGCGGGAGCAAGATTATTGAG TCTGAGAATGCCAACTACATGCCCGTGACGATGATCGGCATGAGCATGAT GATGCAGCACGACGACATGCATGGAGACATAGCCACCTTTGGTGTGGTTA GCGTGCTGGGAGAAGGGCCCTACACATTGCCGGCCCGCGGGAGCAAGATT ATTGAGTCTGAGTTGAAAGTGGAGGAGCTACCCATGGGCATGGGGGCGCA GATGGCGGCAGAACTGAAGCGGAATAACGGGACCTTGATAACGCGCGCTC TCGCCATCATGGATATCAAGTTGAAAGTGGAGGAGCTACCCATGGGCATG GGGGCGCAGATGGCGGCAGAACTGAAGCGGAATAACGGGACCTTGATAAC GCGCGCTCTCGCCATCATGGATATCAAGGTGCTGGTGACCTCGGTGGTGG TGGAGGCGGAGTGCGTGCAGCACATCCAGGCCGACGTGTTTCCCATGGTT ATCACCAAGGTGGCCTGCGACTACTACTACAAGCAAATACGCGTGCCCAT GCTGCCGCCCTGAGTGCTGGTGACCTCGGTGGTGGTGGAGGCGGAGTGCG TGCAGCACATCCAGGCCGACGTGTTTCCCATGGTTATCACCAAGGTGGCC TGCGACTACTACTACAAGCAAATACGCGTGCCCATGCTGCCGCCCTGA back to top
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