mRNA_S-ischiensis_contig91.20891.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig91.20891.1
Unique NamemRNA_S-ischiensis_contig91.20891.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig91.20891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig91contigS-ischiensis_contig91:91381..93008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size823
Cds size822
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig91.20891.1prot_S-ischiensis_contig91.20891.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig91 91381..93008 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817411.7839146-CDS-S-ischiensis_contig91:91380..915871622817411.7839146-CDS-S-ischiensis_contig91:91380..91587Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 91381..91587 -
1695741095.222166-CDS-S-ischiensis_contig91:91380..915871695741095.222166-CDS-S-ischiensis_contig91:91380..91587Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 91381..91587 -
1622817411.8198261-CDS-S-ischiensis_contig91:91973..920701622817411.8198261-CDS-S-ischiensis_contig91:91973..92070Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 91974..92070 -
1695741095.2347596-CDS-S-ischiensis_contig91:91973..920701695741095.2347596-CDS-S-ischiensis_contig91:91973..92070Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 91974..92070 -
1622817411.8328176-CDS-S-ischiensis_contig91:92218..923131622817411.8328176-CDS-S-ischiensis_contig91:92218..92313Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 92219..92313 -
1695741095.2448924-CDS-S-ischiensis_contig91:92218..923131695741095.2448924-CDS-S-ischiensis_contig91:92218..92313Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 92219..92313 -
1622817411.8442311-CDS-S-ischiensis_contig91:92585..930081622817411.8442311-CDS-S-ischiensis_contig91:92585..93008Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 92586..93008 -
1695741095.2552912-CDS-S-ischiensis_contig91:92585..930081695741095.2552912-CDS-S-ischiensis_contig91:92585..93008Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 92586..93008 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig91.20891.1

>prot_S-ischiensis_contig91.20891.1 ID=prot_S-ischiensis_contig91.20891.1|Name=mRNA_S-ischiensis_contig91.20891.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=274bp
LAAALAEAEASSAASQRRVLEAEAAAGAATQAAAAAAAAAEEQKSVLEAE
AAAAAATQAAAAAAAEEQKTYEAQAARVAAAASQEQLASIAAALGLPAGS
SVGEVLEGLGSVQRGAAGMRECVAEAAAALDVAAGEGEAEQVEAAGDWLT
SGIKNLQARLQMVEFERDELSQSAAEQQGASAKAVQDLEAVAVELECDQN
NVPFKVHELKKLVRELYELKDNHIRKLAKLESQLQSATASAAPASPMSNS
STVTSYTGNGAEVGPEVRLVGNS*
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mRNA from alignment at S-ischiensis_contig91:91381..93008-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig91.20891.1 ID=mRNA_S-ischiensis_contig91.20891.1|Name=mRNA_S-ischiensis_contig91.20891.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1628bp|location=Sequence derived from alignment at S-ischiensis_contig91:91381..93008- (Schizocladia ischiensis KU_0333)
CTTGCCGCCGCCCTAGCGGAAGCAGAGGCATCCTCAGCTGCGTCGCAGCG
GCGCGTGCTCGAGGCCGAGGCTGCTGCGGGCGCGGCCACGCAGGCGGCGG
CAGCCGCCGCCGCCGCCGCTGAGGAGCAGAAGAGCGTCCTCGAGGCTGAG
GCTGCTGCGGCCGCGGCTACACAGGCGGCGGCAGCCGCTGCCGCTGAGGA
GCAGAAGACTTACGAAGCACAGGCGGCAAGGGTGGCAGCGGCGGCCTCGC
AGGAACAGCTTGCGTCCATTGCTGCAGCGCTGGGTCTTCCGGCGGGCTCC
TCGGTGGGAGAGGTGTTGGAGGGGCTGGGCTCCGTGCAGCGAGGAGCGGC
GGGCATGAGGGAGTGCGTGGCGGAGGCGGCGGCGGCGCTGGACGTGGCCG
CGGGAGAGGGCGAGGCGGAGCAGGTGTGTGGTGTGGTGTTTGTCCATGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCTTGTG
TGTACGTTCGTGCATGTGACCGAGAGCTGTGTGTGCTTGCCGCACATGGA
TGCCTGTCAGTGACTAGGTAACCGACAGGGCGGGGACCCTCCCATACGTT
TCCATGGCGTCACTCACGCCTGTCCGTGCTTTGCACTGACCGTTGATTGT
ACTGTACGGCGTTGATGTCCGATAAATTACTGTACGTCCGACCAGGTGGA
AGCCGCAGGAGACTGGCTCACCAGCGGCATCAAAAACCTGCAGGCGCGCC
TCCAGATGGTGGAGTTTGAGCGAGACGAGCTGTCGCAAAGGTGAACACCC
CCCACTGCTCTTAAGGTACTGCTTGGCTTGCATGCGTGCTACGGTGTGTG
TGCGTGTGTGCGTGTGTGTGTGCGCGTGCTCCCGTGCGCGCACAAACCTA
ACCACTTTTGCCTTTCCCTTTGCCGTGGCGTGTATCAGCGCGGCGGAGCA
GCAGGGAGCCAGTGCCAAGGCAGTGCAGGACCTTGAGGCAGTGGCCGTGG
AACTGGAGTGCGACCAGAACAACGTGCCATTCAAGGTGGGGCATTCTCTC
CTTGGAAATATCTGTGTCTGTATCTCTCCCCCGTGTCTCCCCAATCCCCC
TCTCTGGGGGGGGAGCATGTGTGGTCCCTCTCTGTGTCTGTATCTCTCAT
GTCTCCCCAAGCCCCCTCTCTGGGGGGGGGGGCATGTGTGGTTACGTGTG
CCACACAAGCACAAGACAAAATGTGATACTCGGACGGCGTGCGCATGACA
ACGTCCACATGGACAAGCACACAACACAAACAGTATGCAGGCACAGGGGG
TGCAACAAACGAACCGCGGAGGGGGGCACACACACCCACACACACACACA
CACACACACACACATGCAAGCATGCACACGGACGCCTTCTCACTGTGTGC
TTGCCCTCGACCGCGGATCAGGTACACGAGCTGAAGAAGCTCGTCCGGGA
GCTGTACGAGCTGAAAGACAACCACATACGCAAGCTTGCCAAGCTGGAAT
CCCAACTGCAGTCTGCCACTGCCTCGGCGGCGCCCGCCTCCCCCATGTCC
AACTCCTCGACGGTGACCTCCTACACCGGCAATGGCGCTGAGGTCGGCCC
CGAGGTGCGCCTGGTGGGCAATTCATAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig91:91381..93008-

>mRNA_S-ischiensis_contig91.20891.1 ID=mRNA_S-ischiensis_contig91.20891.1|Name=mRNA_S-ischiensis_contig91.20891.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1644bp|location=Sequence derived from alignment at S-ischiensis_contig91:91381..93008- (Schizocladia ischiensis KU_0333)
CTTGCCGCCGCCCTAGCGGAAGCAGAGGCATCCTCAGCTGCGTCGCAGCG
GCGCGTGCTCGAGGCCGAGGCTGCTGCGGGCGCGGCCACGCAGGCGGCGG
CAGCCGCCGCCGCCGCCGCTGAGGAGCAGAAGAGCGTCCTCGAGGCTGAG
GCTGCTGCGGCCGCGGCTACACAGGCGGCGGCAGCCGCTGCCGCTGAGGA
GCAGAAGACTTACGAAGCACAGGCGGCAAGGGTGGCAGCGGCGGCCTCGC
AGGAACAGCTTGCGTCCATTGCTGCAGCGCTGGGTCTTCCGGCGGGCTCC
TCGGTGGGAGAGGTGTTGGAGGGGCTGGGCTCCGTGCAGCGAGGAGCGGC
GGGCATGAGGGAGTGCGTGGCGGAGGCGGCGGCGGCGCTGGACGTGGCCG
CGGGAGAGGGCGAGGCGGAGCAGCTTGCCGCCGCCCTAGCGGAAGCAGAG
GCATCCTCAGCTGCGTCGCAGCGGCGCGTGCTCGAGGCCGAGGCTGCTGC
GGGCGCGGCCACGCAGGCGGCGGCAGCCGCCGCCGCCGCCGCTGAGGAGC
AGAAGAGCGTCCTCGAGGCTGAGGCTGCTGCGGCCGCGGCTACACAGGCG
GCGGCAGCCGCTGCCGCTGAGGAGCAGAAGACTTACGAAGCACAGGCGGC
AAGGGTGGCAGCGGCGGCCTCGCAGGAACAGCTTGCGTCCATTGCTGCAG
CGCTGGGTCTTCCGGCGGGCTCCTCGGTGGGAGAGGTGTTGGAGGGGCTG
GGCTCCGTGCAGCGAGGAGCGGCGGGCATGAGGGAGTGCGTGGCGGAGGC
GGCGGCGGCGCTGGACGTGGCCGCGGGAGAGGGCGAGGCGGAGCAGGTGG
AAGCCGCAGGAGACTGGCTCACCAGCGGCATCAAAAACCTGCAGGCGCGC
CTCCAGATGGTGGAGTTTGAGCGAGACGAGCTGTCGCAAAGGTGGAAGCC
GCAGGAGACTGGCTCACCAGCGGCATCAAAAACCTGCAGGCGCGCCTCCA
GATGGTGGAGTTTGAGCGAGACGAGCTGTCGCAAAGCGCGGCGGAGCAGC
AGGGAGCCAGTGCCAAGGCAGTGCAGGACCTTGAGGCAGTGGCCGTGGAA
CTGGAGTGCGACCAGAACAACGTGCCATTCAAGCGCGGCGGAGCAGCAGG
GAGCCAGTGCCAAGGCAGTGCAGGACCTTGAGGCAGTGGCCGTGGAACTG
GAGTGCGACCAGAACAACGTGCCATTCAAGGTACACGAGCTGAAGAAGCT
CGTCCGGGAGCTGTACGAGCTGAAAGACAACCACATACGCAAGCTTGCCA
AGCTGGAATCCCAACTGCAGTCTGCCACTGCCTCGGCGGCGCCCGCCTCC
CCCATGTCCAACTCCTCGACGGTGACCTCCTACACCGGCAATGGCGCTGA
GGTCGGCCCCGAGGTGCGCCTGGTGGGCAATTCATAAGTACACGAGCTGA
AGAAGCTCGTCCGGGAGCTGTACGAGCTGAAAGACAACCACATACGCAAG
CTTGCCAAGCTGGAATCCCAACTGCAGTCTGCCACTGCCTCGGCGGCGCC
CGCCTCCCCCATGTCCAACTCCTCGACGGTGACCTCCTACACCGGCAATG
GCGCTGAGGTCGGCCCCGAGGTGCGCCTGGTGGGCAATTCATAA
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