mRNA_S-ischiensis_contig91.20887.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig91.20887.1
Unique NamemRNA_S-ischiensis_contig91.20887.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig91.20887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig91contigS-ischiensis_contig91:33133..33781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size649
Cds size375
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817412.4718947-CDS-S-ischiensis_contig91:33132..335071622817412.4718947-CDS-S-ischiensis_contig91:33132..33507Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 33133..33507 +
1695741095.699488-CDS-S-ischiensis_contig91:33132..335071695741095.699488-CDS-S-ischiensis_contig91:33132..33507Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 33133..33507 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817412.4827845-UTR-S-ischiensis_contig91:33507..337811622817412.4827845-UTR-S-ischiensis_contig91:33507..33781Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 33508..33781 +
1695741095.712911-UTR-S-ischiensis_contig91:33507..337811695741095.712911-UTR-S-ischiensis_contig91:33507..33781Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 33508..33781 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig91.20887.1prot_S-ischiensis_contig91.20887.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig91 33133..33507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig91.20887.1

>prot_S-ischiensis_contig91.20887.1 ID=prot_S-ischiensis_contig91.20887.1|Name=mRNA_S-ischiensis_contig91.20887.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=125bp
MCNPSPLQIPPAGGVIAPRKRCRPRPRPLLWGRLLPAPADPCCRAPALAP
ACVVLLGSQAGGHRSEGPGLGLQLASPLRPQRSARTDPPMPDVPRCRRVE
PCTPCQSVCWSCVWSTTSPCPSHA*
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mRNA from alignment at S-ischiensis_contig91:33133..33781+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig91.20887.1 ID=mRNA_S-ischiensis_contig91.20887.1|Name=mRNA_S-ischiensis_contig91.20887.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=649bp|location=Sequence derived from alignment at S-ischiensis_contig91:33133..33781+ (Schizocladia ischiensis KU_0333)
ATGTGCAACCCGAGTCCACTACAAATCCCACCGGCTGGCGGTGTGATTGC
ACCGAGGAAGCGTTGTAGGCCTCGTCCTCGTCCTCTCCTATGGGGTCGTC
TCCTCCCAGCTCCGGCAGATCCTTGTTGCCGCGCTCCAGCTCTTGCTCCA
GCGTGCGTAGTACTTCTGGGTTCCCAGGCCGGCGGCCACCGGTCCGAGGG
CCCAGGTCTTGGTCTCCAGTTGGCGTCTCCTCTGCGGCCACAAAGGTCAG
CTCGGACAGATCCTCCGATGCCAGATGTGCCGCGTTGCCGCCGTGTTGAG
CCCTGCACTCCTTGTCAGAGTGTGTGTTGGTCTTGCGTTTGGAGCACCAC
TTCCCCGTGCCCGTCCCACGCTTAGGGGTTGGCCCCCCGATGCCGCCGTT
GCCGCGGCCCTTGCCACCATTCTTGTCCGGACAGTCTTTCTTCTTGTGCC
CCAGCCGATGACAGTTGTGGCAGGTTCCCCGGAATCCTCGGTTGTCTTGA
GATCCGTTGCTGCCGTTGTCGTTGACTGAGAAGGCCACCTCCTCGCCCTT
GCTCCCAGTCCTCCCGCTCCCGGACTGCACCACAGAGATGTAGTACTCCC
AGATGCAGGTCTTAATCTCGTCGTACGACAGATCAAGCCGAGTACGGAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig91:33133..33781+

>mRNA_S-ischiensis_contig91.20887.1 ID=mRNA_S-ischiensis_contig91.20887.1|Name=mRNA_S-ischiensis_contig91.20887.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=750bp|location=Sequence derived from alignment at S-ischiensis_contig91:33133..33781+ (Schizocladia ischiensis KU_0333)
ATGTGCAACCCGAGTCCACTACAAATCCCACCGGCTGGCGGTGTGATTGC
ACCGAGGAAGCGTTGTAGGCCTCGTCCTCGTCCTCTCCTATGGGGTCGTC
TCCTCCCAGCTCCGGCAGATCCTTGTTGCCGCGCTCCAGCTCTTGCTCCA
GCGTGCGTAGTACTTCTGGGTTCCCAGGCCGGCGGCCACCGGTCCGAGGG
CCCAGGTCTTGGTCTCCAGTTGGCGTCTCCTCTGCGGCCACAAAGGTCAG
CTCGGACAGATCCTCCGATGCCAGATGTGCCGCGTTGCCGCCGTGTTGAG
CCCTGCACTCCTTGTCAGAGTGTGTGTTGGTCTTGCGTTTGGAGCACCAC
TTCCCCGTGCCCGTCCCACGCTTAGATGTGCAACCCGAGTCCACTACAAA
TCCCACCGGCTGGCGGTGTGATTGCACCGAGGAAGCGTTGTAGGCCTCGT
CCTCGTCCTCTCCTATGGGGTCGTCTCCTCCCAGCTCCGGCAGATCCTTG
TTGCCGCGCTCCAGCTCTTGCTCCAGCGTGCGTAGTACTTCTGGGTTCCC
AGGCCGGCGGCCACCGGTCCGAGGGCCCAGGTCTTGGTCTCCAGTTGGCG
TCTCCTCTGCGGCCACAAAGGTCAGCTCGGACAGATCCTCCGATGCCAGA
TGTGCCGCGTTGCCGCCGTGTTGAGCCCTGCACTCCTTGTCAGAGTGTGT
GTTGGTCTTGCGTTTGGAGCACCACTTCCCCGTGCCCGTCCCACGCTTAG
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