mRNA_S-ischiensis_contig90.20878.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig90.20878.1
Unique NamemRNA_S-ischiensis_contig90.20878.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig90.20878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig90contigS-ischiensis_contig90:393108..395485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size289
Cds size288
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817407.5291686-CDS-S-ischiensis_contig90:393107..3931941622817407.5291686-CDS-S-ischiensis_contig90:393107..393194Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 393108..393194 +
1695741091.9198704-CDS-S-ischiensis_contig90:393107..3931941695741091.9198704-CDS-S-ischiensis_contig90:393107..393194Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 393108..393194 +
1622817407.5415554-CDS-S-ischiensis_contig90:395284..3954851622817407.5415554-CDS-S-ischiensis_contig90:395284..395485Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 395285..395485 +
1695741091.9345307-CDS-S-ischiensis_contig90:395284..3954851695741091.9345307-CDS-S-ischiensis_contig90:395284..395485Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 395285..395485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig90.20878.1prot_S-ischiensis_contig90.20878.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig90 393108..395485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig90.20878.1

>prot_S-ischiensis_contig90.20878.1 ID=prot_S-ischiensis_contig90.20878.1|Name=mRNA_S-ischiensis_contig90.20878.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=96bp
MWRRGGGGGGQRRRRHPGTVTTMAFAPVEVNGHRLLALGSLDGALRVIDY
DGPASDLHHLLQAGGHSGPGGFSTRARWPHLQHHQHQQQQRRHWGR
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mRNA from alignment at S-ischiensis_contig90:393108..395485+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig90.20878.1 ID=mRNA_S-ischiensis_contig90.20878.1|Name=mRNA_S-ischiensis_contig90.20878.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2378bp|location=Sequence derived from alignment at S-ischiensis_contig90:393108..395485+ (Schizocladia ischiensis KU_0333)
ATGTGGCGGCGGGGTGGGGGGGGGGGGGGGCAGCGGCGGCGGCGGCACCC
CGGGACGGTGACGACGATGGCGTTTGCTCCGGTGGAGGTGAGTGAGTGAG
GGTGTGTGGATGGTTGTGCGGTGCTTCGAAAAGCATCGTGTACTACTATG
CTTACGGTGCCCCATACTCTACTGTACATGTGCTTGCGAGGCGATTCCGC
CCCATGTAGTCGGGGCTGCAGCTGCGCTCTCTACAGTAGTTCTGCAGTAC
ATACCGTAATTGTCGGAGAGATCTTGCCCCCCCATGCCAATTTTTGGGAG
AACCTTTATCGCCGAATACCGGTTGGATTCGCGCAGGAAAACTCGGAAAA
TCTCCCTCAGGGCCTGGGGGAACTTTTCCGAAGGCTTTCGGGACCATTCA
GGACCTTCCTGGCTAGAATTATTCCCCCGAAATTGGCCTGTGGGGGCGAA
ATCTCTCCGACGGCTACGGTACTCACACCGAACAGTGCTTGCCGTAGTCC
CGAGACCGTTGGTGTTGACCACTACCAGTACAAGTAGCGCACCGACCGAC
TATAGAGACAGGGCAAGTTGGTGGTGTGATGTGTGCTCGGAAGCGCAGTG
GTATAAGACTGATGCGTGCTGGCTGAGATTGATGTGATGTGATGTGAAAC
TGCAGTACACTGCAGGTAGAGTAGACATCACATCGCATCACAGCTTGTAT
ATACTTTGTACAGTAGTTTGCCATCACCTCACTACTCGACTCGACCATAG
ACGGGAGCAGGCCTGCTTCGTACTCTGCTGTTATAGCCATCATCCCTTTA
CCCCTCGCCTCCCCAAGGAACGGGCACCGCCTCCTGGCTATGAACTCCCT
CGACTGTTAAGTACTTACTGTCATAGCCATCATCCCTTTACCCCTCGCCC
CCCCAAGGTGAACGGGCACCGCCTCCTGGCTATGAATTCCCTCGACTGTT
ACGTACTTACTGTCATAGCCATCGTCCCTTTACCCCTCGCCTACCCAAGG
TGAACAGGCACCGCCTCCTGGCTATGAACTCCCTCGACTGTTACGTACTT
CGAAGTACTTGCTGTCATAGCCATCATCATCCCTTTCCCCCTCGCCTCCC
CAATGTGAACAGCCATTGCCTCTTCGCCCTGGCCTCCCTGGGCAGGCCTG
TTACATACTGTGATAGCAATCCCTCCCTTTTCCCCTCCCCTTCGCCTCCC
CACGGTGAACGGCGACCTCCTCCTCGCCATGGGCAGTAGATATTGTAGTT
GTCGGGCTCGACTGATTTTGTGGGTGGTGGCGTTTCTAGCTACTTGGATC
AAAATATCGAATAATGATTATCGATATCGAATATCGATTATCGATAGATA
TATACGAGTACTACTAGATCAGTACTGTCGACAAATAGGTTGACTATCTT
ATCCCTTTTCCCCTCCCCTCGCTCCCCAAGGTGAACGGCCACCGCCTCCT
CGCCATGGGCTACAGTACAGTACACTCCTGTAGAGTATATATCACATCAC
ATCACATCACATCACAGCTTGTGTATACTTCGCACAGTAGTTTGCCATCA
CCTCATTACTCGACTCGAGCATAGACGGGAGCGGGCCTGCTACGTACTTT
ACTGTCATAGCCATCATCCCTCTTCCCCTCGCCTCCCCAAGGTGAATGGG
CAACGCCTCCTCACTATGAACTCCCTCGACAGGCCTGTTAAGTAACTGTG
ATAGCCATCATCCCTCCCTTTTTTCCCCTTCGCCTCCCCAAGGTGAGCAG
GCACCGCTCCTCGCCATGGGCAGTAGATACTTATCGAGCTCGACTGATTT
CGTGGGTGGCGCTTGTTTGGACTCGCGTTCTTTTCCACTCGCTTTTGATC
TTCATGCCAAATACTACCTGGATTTAGCGTGGGTCACAAACTATCGAATA
TCGACTATCGATAGACATCTACTGTAGATCAGTACTGTCAATAAATAGGT
TGATTGGCATATCCCTTTTCCCCTCCCCCTCGCCTCCCCAAGGTGAACGG
CCACCGCCTCCTCGCCATGGGCTACAGTACACTACTGTAGAGCAGACATC
ACATCACATCACATCACATCACAGCTTGTATATACTTCCAAGTAGGTTGC
CATCACGCCATTACTCGACTCGACCCTGTCGTACAATAGCCATCGTCCCT
TTTCCCTTTTCCCCGCGCCTCCCCAAGGTGAACGGCCACCGCCTCCTCGC
CCTGGGCTCCCTCGACGGCGCCCTGCGCGTGATTGACTACGACGGGCCCG
CCTCCGACCTCCACCACCTCCTCCAAGCCGGGGGCCACTCCGGGCCGGGC
GGTTTCAGCACCCGTGCCCGCTGGCCCCACCTGCAACACCATCAGCACCA
GCAACAGCAGCGCCGGCACTGGGGGCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig90:393108..395485+

>mRNA_S-ischiensis_contig90.20878.1 ID=mRNA_S-ischiensis_contig90.20878.1|Name=mRNA_S-ischiensis_contig90.20878.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=576bp|location=Sequence derived from alignment at S-ischiensis_contig90:393108..395485+ (Schizocladia ischiensis KU_0333)
ATGTGGCGGCGGGGTGGGGGGGGGGGGGGGCAGCGGCGGCGGCGGCACCC
CGGGACGGTGACGACGATGGCGTTTGCTCCGGTGGAGATGTGGCGGCGGG
GTGGGGGGGGGGGGGGGCAGCGGCGGCGGCGGCACCCCGGGACGGTGACG
ACGATGGCGTTTGCTCCGGTGGAGGTGAACGGCCACCGCCTCCTCGCCCT
GGGCTCCCTCGACGGCGCCCTGCGCGTGATTGACTACGACGGGCCCGCCT
CCGACCTCCACCACCTCCTCCAAGCCGGGGGCCACTCCGGGCCGGGCGGT
TTCAGCACCCGTGCCCGCTGGCCCCACCTGCAACACCATCAGCACCAGCA
ACAGCAGCGCCGGCACTGGGGGCGGGTGAACGGCCACCGCCTCCTCGCCC
TGGGCTCCCTCGACGGCGCCCTGCGCGTGATTGACTACGACGGGCCCGCC
TCCGACCTCCACCACCTCCTCCAAGCCGGGGGCCACTCCGGGCCGGGCGG
TTTCAGCACCCGTGCCCGCTGGCCCCACCTGCAACACCATCAGCACCAGC
AACAGCAGCGCCGGCACTGGGGGCGG
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