mRNA_S-ischiensis_contig90.20876.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig90.20876.1
Unique NamemRNA_S-ischiensis_contig90.20876.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig90.20876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig90contigS-ischiensis_contig90:381808..382153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size347
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817408.0869727-UTR-S-ischiensis_contig90:381807..3818531622817408.0869727-UTR-S-ischiensis_contig90:381807..381853Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 381808..381853 +
1695741092.2549598-UTR-S-ischiensis_contig90:381807..3818531695741092.2549598-UTR-S-ischiensis_contig90:381807..381853Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 381808..381853 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817408.0990405-CDS-S-ischiensis_contig90:381853..3821531622817408.0990405-CDS-S-ischiensis_contig90:381853..382153Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 381854..382153 +
1695741092.2695286-CDS-S-ischiensis_contig90:381853..3821531695741092.2695286-CDS-S-ischiensis_contig90:381853..382153Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 381854..382153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig90.20876.1prot_S-ischiensis_contig90.20876.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig90 381854..382153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig90.20876.1

>prot_S-ischiensis_contig90.20876.1 ID=prot_S-ischiensis_contig90.20876.1|Name=mRNA_S-ischiensis_contig90.20876.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=100bp
MAAVPPGPPGVVNGPGVHFCYLFLIFAPGPGPLHGGGVQVDLLTHQRGIS
WPGARRGCTGGSPVTNTRFHVGCCSVLACAVVLSRTRLEGGRGRGAREVE
back to top

mRNA from alignment at S-ischiensis_contig90:381808..382153+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig90.20876.1 ID=mRNA_S-ischiensis_contig90.20876.1|Name=mRNA_S-ischiensis_contig90.20876.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=346bp|location=Sequence derived from alignment at S-ischiensis_contig90:381808..382153+ (Schizocladia ischiensis KU_0333)
CAAGGGCTGAATCGGACATCATGACTCGGGTGCACCATACCATACCATGG
CTGCCGTCCCACCCGGGCCTCCAGGGGTGGTCAACGGCCCAGGCGTTCAT
TTTTGCTATCTCTTTCTAATTTTTGCACCGGGCCCCGGCCCTCTGCACGG
GGGTGGCGTTCAAGTTGACTTGCTAACGCACCAGAGGGGCATATCCTGGC
CGGGGGCCCGGCGTGGATGTACGGGGGGCTCGCCAGTGACGAATACTCGT
TTTCATGTCGGGTGCTGTTCAGTTTTAGCGTGTGCTGTGGTGCTGTCACG
GACGAGGCTGGAGGGCGGGAGGGGCCGGGGGGCGCGGGAGGTGGAA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig90:381808..382153+

>mRNA_S-ischiensis_contig90.20876.1 ID=mRNA_S-ischiensis_contig90.20876.1|Name=mRNA_S-ischiensis_contig90.20876.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=600bp|location=Sequence derived from alignment at S-ischiensis_contig90:381808..382153+ (Schizocladia ischiensis KU_0333)
ATGGCTGCCGTCCCACCCGGGCCTCCAGGGGTGGTCAACGGCCCAGGCGT
TCATTTTTGCTATCTCTTTCTAATTTTTGCACCGGGCCCCGGCCCTCTGC
ACGGGGGTGGCGTTCAAGTTGACTTGCTAACGCACCAGAGGGGCATATCC
TGGCCGGGGGCCCGGCGTGGATGTACGGGGGGCTCGCCAGTGACGAATAC
TCGTTTTCATGTCGGGTGCTGTTCAGTTTTAGCGTGTGCTGTGGTGCTGT
CACGGACGAGGCTGGAGGGCGGGAGGGGCCGGGGGGCGCGGGAGGTGGAA
ATGGCTGCCGTCCCACCCGGGCCTCCAGGGGTGGTCAACGGCCCAGGCGT
TCATTTTTGCTATCTCTTTCTAATTTTTGCACCGGGCCCCGGCCCTCTGC
ACGGGGGTGGCGTTCAAGTTGACTTGCTAACGCACCAGAGGGGCATATCC
TGGCCGGGGGCCCGGCGTGGATGTACGGGGGGCTCGCCAGTGACGAATAC
TCGTTTTCATGTCGGGTGCTGTTCAGTTTTAGCGTGTGCTGTGGTGCTGT
CACGGACGAGGCTGGAGGGCGGGAGGGGCCGGGGGGCGCGGGAGGTGGAA
back to top