mRNA_S-ischiensis_contig90.20868.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig90.20868.1
Unique NamemRNA_S-ischiensis_contig90.20868.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig90.20868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig90contigS-ischiensis_contig90:323929..326870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size239
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817407.4143631-CDS-S-ischiensis_contig90:323930..3240051622817407.4143631-CDS-S-ischiensis_contig90:323930..324005Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 323931..324005 -
1695741091.837512-CDS-S-ischiensis_contig90:323930..3240051695741091.837512-CDS-S-ischiensis_contig90:323930..324005Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 323931..324005 -
1622817407.4277978-CDS-S-ischiensis_contig90:326708..3268701622817407.4277978-CDS-S-ischiensis_contig90:326708..326870Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 326709..326870 -
1695741091.8506088-CDS-S-ischiensis_contig90:326708..3268701695741091.8506088-CDS-S-ischiensis_contig90:326708..326870Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 326709..326870 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig90.20868.1prot_S-ischiensis_contig90.20868.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig90 323931..326870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig90.20868.1

>prot_S-ischiensis_contig90.20868.1 ID=prot_S-ischiensis_contig90.20868.1|Name=mRNA_S-ischiensis_contig90.20868.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=79bp
PKGKQGDRERGTKGKKDFLFLARERTASGRAPTLRRELPESFWQCSKAKA
VDPEVVALILKRDWLTDETGPGAEAGGAG
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mRNA from alignment at S-ischiensis_contig90:323929..326870-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig90.20868.1 ID=mRNA_S-ischiensis_contig90.20868.1|Name=mRNA_S-ischiensis_contig90.20868.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2942bp|location=Sequence derived from alignment at S-ischiensis_contig90:323929..326870- (Schizocladia ischiensis KU_0333)
CCGAAGGGCAAGCAGGGAGACAGGGAGCGGGGAACGAAGGGGAAGAAGGA
CTTCTTGTTCTTGGCGCGCGAACGCACCGCGAGCGGGCGAGCTCCGACGT
TGAGGCGGGAACTGCCAGAGAGCTTCTGGCAATGCAGCAAGGCCAAGGCG
GTGGACCCCGAGGCAAGACCACATATGTCTCAAAGTTGTCGTACCCGCCG
CCCCTTTGCAGGCACCGTATTTTCCCAAATCATTTGCCCCCCTCTTGAGG
TGTTCCTCGCATCGCACACGAATAATCAATGTTTTCGGATCTAGAATCTT
GGTCGCCGTTTCACTAAGTATATAGAGAATTGGACCACCGCCGCCCGGGG
AGTCCTTGGCTTTGGAGGGACGGCGTGATGGGAAGTACGAGTACACAAAG
TACGAGTACACTGCAGCATGTTGGGTACTAGACATCACATGGCGTACGGA
GGTGTCCATTGCTAAAGTAGAGAAGCAGCACATACAGTCACACGGCATCG
CATCGCATCACACCGTAAATAGCAGTACTGCACTTTGCGCAGTTGGAGCG
CCCCGGCCAGCCCCATTGGGGTACATTGTAACCGAGGCAGCCGAGTGGGC
GTTCACTTGCTCTAAGTACTCAAGTGCTGTATATGTGGACGCACGACTAC
TGTACTGGAGAATGCTCCGTCTTCAACGGCGCTATAGTGGTCAATGGTCT
CGGGACTACGGCAAGCACAACGTGAGTACATATGCACTGCTATACTGTGA
TCGAGGCGCTTGGTCAATGGTCTCAGGAAAACGGCCAGCACAACGTGAGC
ACATATATGCTACCGTACTGCACGTAGTACTGACAGGTTCCTCTCATCAT
GGTCAGGGTATCCGTCGCTGAATATTTACTACTTCCAAGTACGTAGTATA
TATACTTGGAAGTATGCTTCGTACTGTAGTACTGGACAGGTCCCTCTCAT
CATGGTCACGGCCTCCATCGCTGAACATATACACGAGTACTGTAGTAGAC
TTTGAAGTACTGTAGTACTGCACAGGTTCCTCTCATCATGGTCAGGGCCT
CCATGGCTGAATACATGGAGATCGCACCCCATCCCTAAAGTACACTGGGG
TCTGGCCCCTGCTGCCCATGGTGACGTGGACCCTTTTACCCCTGCTAAGT
TGGACTGACACACTAACCCTATGACTATACAGACCCCAGGGGGAACAGGG
TTGACCGTTTAAGGACGATATATATATGTATATTATATATATATATATGT
ACTCACGTGGTGCTTGCCGTAGTACCGAGACCATTGACCCCGCGCCTCGC
GCGAGGCGGAGCAGGATATTGTGCTAACTGCGCTACTACAGTGCAGTGTA
TACGAATGTCGGACAGGGTTGTTATTACCCCATGTCCTGTGCATGCCGCC
AACCGTCGATGTCACCCAGTGTACTACATGCTTGGCCACCGATCAGCCTC
CGAAGGGTACCGTAGCCTTTTGGCCACTGGCTCGCACCCCTACATACTAT
GGCGGGACAGAGCGTGCCGGGCTTTCCCCTCCTGGGCCAGGCGTGTGCGT
AGTGTCTACTAGTAGAGGTCTGTGAGAACGATGTCACACTAAACTTGGCC
AATGTGTTTGCGTACAGCAGTACGAGTGCACGAGTACTCGTGTTCGAGGC
AGAGTTTGGTGAGCATTCAACGCAATACATCGTCCCTCCCCAGGGCCCGC
ACAATAGCAAAAACAGCGGCAGCCGTAAGTTACTTGGCGCCCACCAGTGA
TGGAATATCAATCAGTAGGTAGTTATCGGGCTCGGCTGATTTTGTGGGCG
GTGTTACTAACTACTGGGATTTAGTGTGGTTCAAACTATGGAATATCAAC
CAGCGATAGATATATAGATCAGTATTGCGGTCGCACTTGCTGAGGTTTTC
TTCCGTCGTCTGCCACTTCAATGTCTGCGCGCTCTTACAGGTACGTCCCG
CAACGCCATAGACAGACCCTCTTACATTGCCCCTGTATTGCCGGTGCAAA
CCCGGCATGCTCCGTCCCGGCCTAGTTGGTACGCGAGAGTCCATGGCTAA
AAAGCTACTCCTGTCGGAGGGCAAACCCGAAGTTTCGACTTAGGGCTGTC
GGCATTGCACGCACGGTTATGTCGCAAGACAAGCCAATGAGTACATATAT
TGCCCCTGCATGGCCCCCCTTAGTGGCTTCTTTTCTTGATTTTTGTGCCC
TGCGGGTGAAAGAAGGGCTTCTGGTGAGGTCCCCACCTTAGGTTGTTAGG
AGGGGGCCCGGAACTCGCATGCCATCAACAATAATTACAATCCGTACTGT
TATAAATTGGTTGATTTGCTTGGATATTCCGTTACTGGCGCCCATCAGCC
TTGCCACACGCACGCCTCCCCCCCCCCCGCGCCTTGCCACCCCACATCAT
GCTCCCTTCCTCCTCTCTCCCCGCCACTGGGGTTGGCACTTAACCCCTAA
GCGGTACCCTTTTAGGCCCTTGATTAGACATATCTAGGGGTAGAGTAATT
AGACCTAAAAGGAAGGCTAGTTAGGCAATAGTTGACCTCTAAGGGCCAAC
CCTGCTCCCCGCAGGTCGTTGCTCTCATCCTCAAGCACAATTGGCTCACG
GGTCAGTGGTGCCCTTTCAGGCCCTTAATTGCAGTAGAGGTAGCCAGGGG
TCATTAGAACTAAAATGAAGGCTAAGTAGGCCCTAATTGACCTCTAAGGG
CCAACCCTGCTCCCCGCAGGTCGTTTGCTTTCATCCTCAAGCGCGATTGG
CTCACGGTTGAGACCCTAGTCAGAGGTAATTAGGGGTAGTTAGACCTAAA
ATGAAGGCTAATTACGTACCCGTGGGCGCTAATTGACGAACAAGTGCCAA
CCCTGCTCCCCGCAGGTGGTTGCTCTCATCCTCAAACGCGATTGGCTCAC
GGATGAGACTGGGCCCGGAGCCGAGGCCGGGGGCGCGGGTGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig90:323929..326870-

>mRNA_S-ischiensis_contig90.20868.1 ID=mRNA_S-ischiensis_contig90.20868.1|Name=mRNA_S-ischiensis_contig90.20868.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=474bp|location=Sequence derived from alignment at S-ischiensis_contig90:323929..326870- (Schizocladia ischiensis KU_0333)
CCGAAGGGCAAGCAGGGAGACAGGGAGCGGGGAACGAAGGGGAAGAAGGA
CTTCTTGTTCTTGGCGCGCGAACGCACCGCGAGCGGGCGAGCTCCGACGT
TGAGGCGGGAACTGCCAGAGAGCTTCTGGCAATGCAGCAAGGCCAAGGCG
GTGGACCCCGAGCCGAAGGGCAAGCAGGGAGACAGGGAGCGGGGAACGAA
GGGGAAGAAGGACTTCTTGTTCTTGGCGCGCGAACGCACCGCGAGCGGGC
GAGCTCCGACGTTGAGGCGGGAACTGCCAGAGAGCTTCTGGCAATGCAGC
AAGGCCAAGGCGGTGGACCCCGAGGTGGTTGCTCTCATCCTCAAACGCGA
TTGGCTCACGGATGAGACTGGGCCCGGAGCCGAGGCCGGGGGCGCGGGTG
TGGTTGCTCTCATCCTCAAACGCGATTGGCTCACGGATGAGACTGGGCCC
GGAGCCGAGGCCGGGGGCGCGGGT
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