mRNA_S-ischiensis_contig90.20867.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig90.20867.1
Unique NamemRNA_S-ischiensis_contig90.20867.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig90.20867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig90contigS-ischiensis_contig90:309027..309868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size242
Cds size228
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig90.20867.1prot_S-ischiensis_contig90.20867.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig90 309027..309856 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817407.3579974-CDS-S-ischiensis_contig90:309026..3092061622817407.3579974-CDS-S-ischiensis_contig90:309026..309206Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 309027..309206 -
1695741091.7924721-CDS-S-ischiensis_contig90:309026..3092061695741091.7924721-CDS-S-ischiensis_contig90:309026..309206Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 309027..309206 -
1622817407.3690686-CDS-S-ischiensis_contig90:309808..3098561622817407.3690686-CDS-S-ischiensis_contig90:309808..309856Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 309809..309856 -
1695741091.8067317-CDS-S-ischiensis_contig90:309808..3098561695741091.8067317-CDS-S-ischiensis_contig90:309808..309856Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 309809..309856 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817407.3796873-UTR-S-ischiensis_contig90:309856..3098681622817407.3796873-UTR-S-ischiensis_contig90:309856..309868Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 309857..309868 -
1695741091.8178926-UTR-S-ischiensis_contig90:309856..3098681695741091.8178926-UTR-S-ischiensis_contig90:309856..309868Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 309857..309868 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig90.20867.1

>prot_S-ischiensis_contig90.20867.1 ID=prot_S-ischiensis_contig90.20867.1|Name=mRNA_S-ischiensis_contig90.20867.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=76bp
MHELSMGYFKAFQEKRYPLSPALIFSFLVACRLAGQWPIALSLLEAMEAA
WPIPDDSYTRPARPPVGGEHLSGEKT
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mRNA from alignment at S-ischiensis_contig90:309027..309868-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig90.20867.1 ID=mRNA_S-ischiensis_contig90.20867.1|Name=mRNA_S-ischiensis_contig90.20867.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=842bp|location=Sequence derived from alignment at S-ischiensis_contig90:309027..309868- (Schizocladia ischiensis KU_0333)
GTGGATGCTGGGATGCATGAGCTGAGCATGGGTTACTTCAAGGCTTTCCA
GGAGAAGAGGGTGAGCAAATCAATGAGAGTGGTCCGCCCGCCCGGGCCCG
CGAGCCGACGAAGGGCCACTGCTGAGGTCTTTAGTGACGTGGGCCGCACC
TCGCACTGTGTTGTTCCTGTTAATACTAATTGCAGTGTACTGTACTGTCC
ACAGCAGTATGTGTATGCTGTGCTGTAAACTGTACTCGTACAGTAACTGT
ACTGGGGGGTCGTGAGCTGCTGTCCTGCTCCACTCCCTCGGCCTCCGCCC
CCCCCCGGCCTTCGCCCGCCCCCCCCTCCCCTTCCCCTTCCCCCTCCCCC
TCCCCCTCCCCCTCCCCACTCTCCCCTCGCCATTCTCCTCCTGCCCCCTC
CCCCCCACCTCCTCCCCCCCCTCCCCCTCCCCTTCCCGCTTCCCCTCACC
CTCCTCCTTCCTCTCACCCTCCTCCCTCCCCCTTCCCTCCTGCCCCCTGC
CCCACGCACTCTTCCCTCTCCCCCCTCCCTCCCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTTCTTCTCCTCGTCCCCCCCCTCCCCTCCCCCT
CCCCCTCGCCCCCCCCCCTCCTCCACCTCCGCCACCTCTTCCCCCTCCTC
CTCCTCCTCCAGTACCCCTTGTCCCCAGCCCTCATCTTCAGCTTTCTGGT
GGCCTGCCGACTCGCCGGCCAGTGGCCCATCGCCCTCTCCCTCCTGGAGG
CCATGGAGGCCGCTTGGCCCATCCCGGATGACAGTTACACCCGCCCGGCC
CGCCCTCCCGTGGGCGGAGAACACCTCAGCGGAGAGAAGACC
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Coding sequence (CDS) from alignment at S-ischiensis_contig90:309027..309868-

>mRNA_S-ischiensis_contig90.20867.1 ID=mRNA_S-ischiensis_contig90.20867.1|Name=mRNA_S-ischiensis_contig90.20867.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=456bp|location=Sequence derived from alignment at S-ischiensis_contig90:309027..309868- (Schizocladia ischiensis KU_0333)
ATGCATGAGCTGAGCATGGGTTACTTCAAGGCTTTCCAGGAGAAGAGGAT
GCATGAGCTGAGCATGGGTTACTTCAAGGCTTTCCAGGAGAAGAGGTACC
CCTTGTCCCCAGCCCTCATCTTCAGCTTTCTGGTGGCCTGCCGACTCGCC
GGCCAGTGGCCCATCGCCCTCTCCCTCCTGGAGGCCATGGAGGCCGCTTG
GCCCATCCCGGATGACAGTTACACCCGCCCGGCCCGCCCTCCCGTGGGCG
GAGAACACCTCAGCGGAGAGAAGACCTACCCCTTGTCCCCAGCCCTCATC
TTCAGCTTTCTGGTGGCCTGCCGACTCGCCGGCCAGTGGCCCATCGCCCT
CTCCCTCCTGGAGGCCATGGAGGCCGCTTGGCCCATCCCGGATGACAGTT
ACACCCGCCCGGCCCGCCCTCCCGTGGGCGGAGAACACCTCAGCGGAGAG
AAGACC
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