mRNA_S-ischiensis_contig90.20862.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig90.20862.1
Unique NamemRNA_S-ischiensis_contig90.20862.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig90.20862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig90contigS-ischiensis_contig90:226276..227079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size804
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig90.20862.1prot_S-ischiensis_contig90.20862.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig90 226433..226969 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817407.9003136-UTR-S-ischiensis_contig90:226275..2264321622817407.9003136-UTR-S-ischiensis_contig90:226275..226432Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 226276..226432 +
1695741092.1666703-UTR-S-ischiensis_contig90:226275..2264321695741092.1666703-UTR-S-ischiensis_contig90:226275..226432Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 226276..226432 +
1622817407.9258196-UTR-S-ischiensis_contig90:226969..2270791622817407.9258196-UTR-S-ischiensis_contig90:226969..227079Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 226970..227079 +
1695741092.1970892-UTR-S-ischiensis_contig90:226969..2270791695741092.1970892-UTR-S-ischiensis_contig90:226969..227079Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 226970..227079 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817407.9130101-CDS-S-ischiensis_contig90:226432..2269691622817407.9130101-CDS-S-ischiensis_contig90:226432..226969Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 226433..226969 +
1695741092.184117-CDS-S-ischiensis_contig90:226432..2269691695741092.184117-CDS-S-ischiensis_contig90:226432..226969Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 226433..226969 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig90.20862.1

>prot_S-ischiensis_contig90.20862.1 ID=prot_S-ischiensis_contig90.20862.1|Name=mRNA_S-ischiensis_contig90.20862.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=179bp
MTKKHRTGERETKKNHSTGWPEDRPTCDLQWTHSTTLLRYSTTLTTMAPS
TWCAREPRLLAASEVSLAWPPSLNKNAPQSWAGTCGSTPRHARAKKHSQD
KNKEDSTCRRPTKREQASIPGRQPKKEHHNNSMYNNKTTTTTTREETKTT
NNTAATREVGHSKGQTTTKPLALRLPRP*
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mRNA from alignment at S-ischiensis_contig90:226276..227079+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig90.20862.1 ID=mRNA_S-ischiensis_contig90.20862.1|Name=mRNA_S-ischiensis_contig90.20862.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=804bp|location=Sequence derived from alignment at S-ischiensis_contig90:226276..227079+ (Schizocladia ischiensis KU_0333)
GCACGTAGTAGTAGAGGCAGTAGAGTACTTTGAAGTAGCAGCCGAGCACA
GTGTGCACAGTACATGTGCAAAAGAATAGGCCGTACCTGTACGTACAGGC
ACGGTACAGTGTGGGCACAGCCATACTGCACGATGGCACCGGACCGGAGA
AAAAGAGATGACAAAAAAACACAGGACCGGAGAAAGAGAGACAAAAAAAA
ACCACTCGACAGGGTGGCCTGAGGACAGGCCGACGTGTGATTTGCAGTGG
ACACACAGCACAACACTACTCAGATATTCAACCACGCTTACAACCATGGC
ACCGTCGACTTGGTGTGCTCGAGAGCCTCGATTGCTCGCTGCTTCTGAGG
TGTCACTCGCATGGCCGCCCAGCTTGAATAAAAACGCGCCACAAAGCTGG
GCGGGCACATGCGGAAGCACGCCAAGGCATGCTCGTGCCAAAAAGCACAG
TCAAGACAAAAACAAAGAAGACTCGACATGTCGTAGACCTACAAAACGCG
AACAAGCATCCATCCCAGGCAGGCAGCCAAAGAAGGAACATCACAACAAC
TCAATGTACAACAACAAAACAACAACGACGACGACAAGGGAAGAAACGAA
AACTACAAACAATACGGCCGCAACCCGCGAGGTTGGGCATAGCAAGGGTC
AGACAACGACAAAACCGTTGGCGCTGCGCCTGCCACGGCCGTGACCAGGC
CCTCAGTTGACCGCCCAACACAAATGCCCCGCCACCAGAAAATATCTCTC
TGTGTCAGGGGCCGGGGTGGCCGGTCACACAGGGCCATGGCTCATCAAAT
GTGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig90:226276..227079+

>mRNA_S-ischiensis_contig90.20862.1 ID=mRNA_S-ischiensis_contig90.20862.1|Name=mRNA_S-ischiensis_contig90.20862.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1074bp|location=Sequence derived from alignment at S-ischiensis_contig90:226276..227079+ (Schizocladia ischiensis KU_0333)
ATGACAAAAAAACACAGGACCGGAGAAAGAGAGACAAAAAAAAACCACTC
GACAGGGTGGCCTGAGGACAGGCCGACGTGTGATTTGCAGTGGACACACA
GCACAACACTACTCAGATATTCAACCACGCTTACAACCATGGCACCGTCG
ACTTGGTGTGCTCGAGAGCCTCGATTGCTCGCTGCTTCTGAGGTGTCACT
CGCATGGCCGCCCAGCTTGAATAAAAACGCGCCACAAAGCTGGGCGGGCA
CATGCGGAAGCACGCCAAGGCATGCTCGTGCCAAAAAGCACAGTCAAGAC
AAAAACAAAGAAGACTCGACATGTCGTAGACCTACAAAACGCGAACAAGC
ATCCATCCCAGGCAGGCAGCCAAAGAAGGAACATCACAACAACTCAATGT
ACAACAACAAAACAACAACGACGACGACAAGGGAAGAAACGAAAACTACA
AACAATACGGCCGCAACCCGCGAGGTTGGGCATAGCAAGGGTCAGACAAC
GACAAAACCGTTGGCGCTGCGCCTGCCACGGCCGTGAATGACAAAAAAAC
ACAGGACCGGAGAAAGAGAGACAAAAAAAAACCACTCGACAGGGTGGCCT
GAGGACAGGCCGACGTGTGATTTGCAGTGGACACACAGCACAACACTACT
CAGATATTCAACCACGCTTACAACCATGGCACCGTCGACTTGGTGTGCTC
GAGAGCCTCGATTGCTCGCTGCTTCTGAGGTGTCACTCGCATGGCCGCCC
AGCTTGAATAAAAACGCGCCACAAAGCTGGGCGGGCACATGCGGAAGCAC
GCCAAGGCATGCTCGTGCCAAAAAGCACAGTCAAGACAAAAACAAAGAAG
ACTCGACATGTCGTAGACCTACAAAACGCGAACAAGCATCCATCCCAGGC
AGGCAGCCAAAGAAGGAACATCACAACAACTCAATGTACAACAACAAAAC
AACAACGACGACGACAAGGGAAGAAACGAAAACTACAAACAATACGGCCG
CAACCCGCGAGGTTGGGCATAGCAAGGGTCAGACAACGACAAAACCGTTG
GCGCTGCGCCTGCCACGGCCGTGA
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