mRNA_S-ischiensis_contig90.20860.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig90.20860.1
Unique NamemRNA_S-ischiensis_contig90.20860.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig90.20860.1 vs. uniprot
Match: D7G2T8_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T8_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 1.960e-48
Identity = 81/167 (48.50%), Postives = 121/167 (72.46%), Query Frame = 1
Query:    1 ALAWFRMVYSSLFVVLGSWVLFNFYKSRWVLDIRTRSANLVTVAGMAILVGLMPVVNESCRVLWQESIDYFWMSLVLFFVMPVYTGSFIARAVRLAVVFHPKARRRLPWLIPERNYILGILLAGVCLLALPIYHDETMQIWDIAPLHIEILEYMSLGFSAVLAALYP 501
            ALA  R+     F+VLG++ L  FY+SRW+LDIRTRSA+LVT+ G+++L+ ++  VN +  ++W   +D+FW+SL+LFFV P   GS+I RA+RLAVVF+P+A+  LPWLIPERNY+  +LLA + +LA+PIYH+ T+++WD  P    IL+  +   + +L  +YP
Sbjct:   62 ALALVRLGLGCCFIVLGTYALVRFYRSRWILDIRTRSAHLVTLQGVSLLLSMLVTVNGATTIVWDSGLDWFWISLLLFFVSPALFGSYICRALRLAVVFNPRAKSALPWLIPERNYLAVLLLASIGILAIPIYHEYTLEVWDAIPKQTSILKAQARVLAVMLVCIYP 228          
BLAST of mRNA_S-ischiensis_contig90.20860.1 vs. uniprot
Match: A0A6H5JE98_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE98_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 4.920e-45
Identity = 81/167 (48.50%), Postives = 115/167 (68.86%), Query Frame = 1
Query:    1 ALAWFRMVYSSLFVVLGSWVLFNFYKSRWVLDIRTRSANLVTVAGMAILVGLMPVVNESCRVLWQESIDYFWMSLVLFFVMPVYTGSFIARAVRLAVVFHPKARRRLPWLIPERNYILGILLAGVCLLALPIYHDETMQIWDIAPLHIEILEYMSLGFSAVLAALYP 501
            ALA  R+     F+VLG+  L  FY+S+W+LDIRTRSA LV V G+A ++ ++  VN+S  V+W    D+FW+SL+LFF+ P   GS+I RA+RLAVVFHP+ +R LPWLIPE NY++ +L+A V +LA+PIYH+ T+ +WD       IL+  +   +  LA +YP
Sbjct:   51 ALALVRLGVGCCFIVLGTCALVRFYRSKWILDIRTRSAYLVMVGGVAGILTMLVTVNDSTTVVWDIGFDWFWISLLLFFISPALFGSYICRALRLAVVFHPRVKRALPWLIPEHNYMVVLLVASVGMLAIPIYHEYTLGVWDAISKQTNILKIEARVLAVALACIYP 217          
BLAST of mRNA_S-ischiensis_contig90.20860.1 vs. uniprot
Match: D7FTW0_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW0_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 2.460e-43
Identity = 79/167 (47.31%), Postives = 112/167 (67.07%), Query Frame = 1
Query:    1 ALAWFRMVYSSLFVVLGSWVLFNFYKSRWVLDIRTRSANLVTVAGMAILVGLMPVVNESCRVLWQESIDYFWMSLVLFFVMPVYTGSFIARAVRLAVVFHPKARRRLPWLIPERNYILGILLAGVCLLALPIYHDETMQIWDIAPLHIEILEYMSLGFSAVLAALYP 501
            ALA FR+     F+VLG+  L  FY+ + +LDIRTRSA LV V G+A ++ ++  VN++  V+W    D+FW SL LFF+ P   G +I RA+RLAVVFHP+ +R LPWLIPERNY++ +L+A V +LA+PIYH+ T+ +WD       IL+  +   +  LA +YP
Sbjct:   51 ALALFRLGVGCCFIVLGTCALARFYRLKQILDIRTRSAYLVMVGGVAGILTMLVTVNDATTVIWDTGFDWFWTSLFLFFISPALFGRYICRALRLAVVFHPRVKRALPWLIPERNYMVVLLVASVGMLAIPIYHEHTLGVWDAISKQTTILKIEARVLAVALACIYP 217          
BLAST of mRNA_S-ischiensis_contig90.20860.1 vs. uniprot
Match: D7G2T7_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2T7_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 1.390e-37
Identity = 66/132 (50.00%), Postives = 96/132 (72.73%), Query Frame = 1
Query:  106 RSANLVTVAGMAILVGLMPVVNESCRVLWQESIDYFWMSLVLFFVMPVYTGSFIARAVRLAVVFHPKARRRLPWLIPERNYILGILLAGVCLLALPIYHDETMQIWDIAPLHIEILEYMSLGFSAVLAALYP 501
            RSA+LV V G+ +L+ ++  VN S  V+W   +D+FWMSL+LFF+ P   GS+I RA+RLAVVFHP+A+R LPWLIPERNY++ +L+  V ++A+PIY + T+++W+I P    IL   +L F+  LA +YP
Sbjct:    3 RSAHLVMVEGVCVLLTMVVAVNGSINVVWDSGLDWFWMSLLLFFISPALKGSYICRALRLAVVFHPRAKRALPWLIPERNYMVVLLVVSVGMMAIPIYQEYTLEVWEIIPKQTTILTTEALVFAVTLACIYP 134          
BLAST of mRNA_S-ischiensis_contig90.20860.1 vs. uniprot
Match: D8LJQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ7_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 7.290e-37
Identity = 57/116 (49.14%), Postives = 87/116 (75.00%), Query Frame = 1
Query:  154 LMPVVNESCRVLWQESIDYFWMSLVLFFVMPVYTGSFIARAVRLAVVFHPKARRRLPWLIPERNYILGILLAGVCLLALPIYHDETMQIWDIAPLHIEILEYMSLGFSAVLAALYP 501
            ++  VN +  ++W   +D+FW+SL+LFFV P   GS+I RA+RLAVVFHPKA+R LPWLIPERNY+  +++A   +LA+P+YH+ T+++W+I P   +IL ++S+ F+ V A +YP
Sbjct:    1 MLAAVNGAINIVWDSGLDWFWVSLLLFFVSPALFGSYICRALRLAVVFHPKAKRALPWLIPERNYVAVLMVASCGMLAIPLYHEYTLEVWEIIPKQTDILIWVSIAFAVVQACIYP 116          
BLAST of mRNA_S-ischiensis_contig90.20860.1 vs. uniprot
Match: A0A6H5LEP9_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEP9_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 6.230e-36
Identity = 67/149 (44.97%), Postives = 102/149 (68.46%), Query Frame = 1
Query:   67 NFYKSR----WVLDIRTRSANLVTVAGMAILVGLMPVVNESCRVLWQESIDYFWMSLVLFFVMPVYTGSFIARAVRLAVVFHPKARRRLPWLIPERNYILGILLAGVCLLALPIYHDETMQIWDIAPLHIEILEYMSLGFSAVLAALYP 501
            N Y SR    +V     RSA+LVT+ G+++L  ++  VN++  ++W   +D+FW+SL+LFFV P   GS+I RA+RLAVVF+P+A+R LPWLIPERNY+  +LLA + +LA+PIY + T+++WD  P    IL+  +   + +L  +YP
Sbjct:    2 NHYSSRPGFQFVTYRMARSAHLVTLQGVSLLFSMLVTVNDATTIVWDSGLDWFWISLLLFFVSPALFGSYICRALRLAVVFNPRAKRALPWLIPERNYLAVLLLASIGILAIPIYQEYTLEVWDAIPKQTSILKTQARVLAVMLVCIYP 150          
BLAST of mRNA_S-ischiensis_contig90.20860.1 vs. uniprot
Match: D7FTW2_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW2_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 8.760e-32
Identity = 56/125 (44.80%), Postives = 86/125 (68.80%), Query Frame = 1
Query:  127 VAGMAILVGLMPVVNESCRVLWQESIDYFWMSLVLFFVMPVYTGSFIARAVRLAVVFHPKARRRLPWLIPERNYILGILLAGVCLLALPIYHDETMQIWDIAPLHIEILEYMSLGFSAVLAALYP 501
            V G+A ++ ++  VN++  V+W    D+FW SL+LFF+ P   GS+I RA+RLAVVFHP+ +R LPWL+PERNY++ +L++ V +LA+PIYH+ T+ +WD       IL+  +   +  LA +YP
Sbjct:    2 VGGVAGILTMLVTVNDATTVIWDTGFDWFWTSLLLFFISPALFGSYICRALRLAVVFHPRVKRALPWLVPERNYMVVLLVSSVGMLAIPIYHEHTLGVWDAISKQTTILKIEARVLAVALACIYP 126          
BLAST of mRNA_S-ischiensis_contig90.20860.1 vs. uniprot
Match: D8LJQ9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ9_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 1.680e-29
Identity = 54/127 (42.52%), Postives = 89/127 (70.08%), Query Frame = 1
Query:  127 VAGMAILVGLMPVVNESCRVLWQE--SIDYFWMSLVLFFVMPVYTGSFIARAVRLAVVFHPKARRRLPWLIPERNYILGILLAGVCLLALPIYHDETMQIWDIAPLHIEILEYMSLGFSAVLAALYP 501
            +AG +++V  +  VN+S  +LW    S+D+FW+SL+LF V+P+  GS+I RA+RLAV+FHP+A++ LPWLIPERN++  +    V LL +PIY D T+++W++    +++L   +L  +  LA ++P
Sbjct:    1 MAGSSMVVSYLAAVNQSLFILWGATYSLDWFWISLLLFSVLPLVFGSYICRALRLAVIFHPRAKQALPWLIPERNHLFFLSAMAVALLIIPIYQDMTLEVWEVIAKQVDLLASATLVLAGTLACIFP 127          
BLAST of mRNA_S-ischiensis_contig90.20860.1 vs. uniprot
Match: A0A6H5L7K1_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7K1_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 6.260e-24
Identity = 48/103 (46.60%), Postives = 75/103 (72.82%), Query Frame = 1
Query:  127 VAGMAILVGLMPVVNESCRVLWQE--SIDYFWMSLVLFFVMPVYTGSFIARAVRLAVVFHPKARRRLPWLIPERNYILGILLAGVCLLALPIYHDETMQIWDI 429
            +AG +++V  +  VN+S  +LW    S+D+FW+SL+LF V+P+  GS+I RA+RLAV+FHP+A++ LPWLIPERN++  +    V  L +PIY D T+++W +
Sbjct:    1 MAGSSMVVSYVAAVNQSLFILWGATYSLDWFWISLLLFSVLPLVFGSYICRALRLAVIFHPRAKQALPWLIPERNHLFFLSATVVAFLIVPIYQDMTLEVWKV 103          
BLAST of mRNA_S-ischiensis_contig90.20860.1 vs. uniprot
Match: D7FTW1_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW1_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 2.800e-18
Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = 1
Query:  106 RSANLVTVAGMAILVGLMPVVNESCRVLWQESIDYFWMSLVLFFVMPVYTGSFIARAVRLAVVFHPKARRRLPWLIP 336
            RSA LV V G+  L+ ++  +N S  V+W   +DYFW+SL+LF V+P   GS+I R +RLAVVFHP+A+R LPWLIP
Sbjct:    3 RSAYLVMVEGVCALLTMLVTLNSSINVVWDCGLDYFWVSLLLFLVVPTLLGSYICRVLRLAVVFHPRAKRALPWLIP 79          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig90.20860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G2T8_ECTSI1.960e-4848.50RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JE98_9PHAE4.920e-4548.50RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTW0_ECTSI2.460e-4347.31RGS domain-containing protein n=2 Tax=Ectocarpus s... [more]
D7G2T7_ECTSI1.390e-3750.00RGS domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8LJQ7_ECTSI7.290e-3749.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LEP9_9PHAE6.230e-3644.97RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTW2_ECTSI8.760e-3244.80RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJQ9_ECTSI1.680e-2942.52Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L7K1_9PHAE6.260e-2446.60RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTW1_ECTSI2.800e-1854.55RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig90contigS-ischiensis_contig90:204526..210803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size501
Cds size483
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig90.20860.1prot_S-ischiensis_contig90.20860.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig90 204544..210803 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817409.823599-UTR-S-ischiensis_contig90:204525..2045431622817409.823599-UTR-S-ischiensis_contig90:204525..204543Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 204526..204543 +
1695741093.646564-UTR-S-ischiensis_contig90:204525..2045431695741093.646564-UTR-S-ischiensis_contig90:204525..204543Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 204526..204543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817409.8368194-CDS-S-ischiensis_contig90:204543..2046321622817409.8368194-CDS-S-ischiensis_contig90:204543..204632Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 204544..204632 +
1695741093.665966-CDS-S-ischiensis_contig90:204543..2046321695741093.665966-CDS-S-ischiensis_contig90:204543..204632Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 204544..204632 +
1622817409.848584-CDS-S-ischiensis_contig90:206021..2061391622817409.848584-CDS-S-ischiensis_contig90:206021..206139Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 206022..206139 +
1695741093.6848035-CDS-S-ischiensis_contig90:206021..2061391695741093.6848035-CDS-S-ischiensis_contig90:206021..206139Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 206022..206139 +
1622817409.8598845-CDS-S-ischiensis_contig90:206839..2069501622817409.8598845-CDS-S-ischiensis_contig90:206839..206950Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 206840..206950 +
1695741093.6977296-CDS-S-ischiensis_contig90:206839..2069501695741093.6977296-CDS-S-ischiensis_contig90:206839..206950Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 206840..206950 +
1622817409.873252-CDS-S-ischiensis_contig90:207760..2078461622817409.873252-CDS-S-ischiensis_contig90:207760..207846Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 207761..207846 +
1695741093.7109747-CDS-S-ischiensis_contig90:207760..2078461695741093.7109747-CDS-S-ischiensis_contig90:207760..207846Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 207761..207846 +
1622817409.8854544-CDS-S-ischiensis_contig90:210724..2108031622817409.8854544-CDS-S-ischiensis_contig90:210724..210803Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 210725..210803 +
1695741093.7228482-CDS-S-ischiensis_contig90:210724..2108031695741093.7228482-CDS-S-ischiensis_contig90:210724..210803Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 210725..210803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig90.20860.1

>prot_S-ischiensis_contig90.20860.1 ID=prot_S-ischiensis_contig90.20860.1|Name=mRNA_S-ischiensis_contig90.20860.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=161bp
MVYSSLFVVLGSWVLFNFYKSRWVLDIRTRSANLVTVAGMAILVGLMPVV
NESCRVLWQESIDYFWMSLVLFFVMPVYTGSFIARAVRLAVVFHPKARRR
LPWLIPERNYILGILLAGVCLLALPIYHDETMQIWDIAPLHIEILEYMSL
GFSAVLAALYP
back to top

mRNA from alignment at S-ischiensis_contig90:204526..210803+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig90.20860.1 ID=mRNA_S-ischiensis_contig90.20860.1|Name=mRNA_S-ischiensis_contig90.20860.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6278bp|location=Sequence derived from alignment at S-ischiensis_contig90:204526..210803+ (Schizocladia ischiensis KU_0333)
GCCCTGGCCTGGTTCCGGATGGTGTACTCCAGCCTGTTTGTGGTCTTGGG CTCGTGGGTGCTCTTCAACTTCTACAAGTCGCGCTGGGTCCTGGACATTC GCACAAGGTCAGTCGGCATTCTGCTGTGCTCATTGCCGTTTCTGTAGTGG ACATTCGAGCCAGGTCAGCTCGGAATTCTACTTTGTGCATGTGCTGTGCT TATATTTTCCGATTTCTGTACTGTAGTATACGAGTACGAGTACTTCCAAG TACCTGCAAGTACAAGAGGCGTGTGCAGCGGGCGACAAATGTCCAGGTGC TCCTGAGATTGGGGATGGTTCGAACCAGGTCAGTTGGAAATCTGTTTACA AGTGTGCATGTGCTGTGCTTATTGCCGTGTTCTGTAGTGCACGAGTACGA GTACTTCCAAGTACTTCCAAGTACCTGCAAAGCACAAGAGGCGTGTGCAG CGGGCGCACAAATGTCTGCAACAGGCGCTTCTGAGATTTTGGGTGCTTAC TGCGGCGGCGGCGCCGGCAGCTGTGCTGGTTGCGGGCAGTGATGAAATAT CTAAGCAAATCAACCTATTTATCGACAGGACCGATCTATTTTGAATGGTA GATAAGCGGCGAGTTCCAGGCCCCGTGCCAAAAGACTCAACGAAGCCCTT CTTCCCCTCGCAGGGCAAAAAGAAAACAAAGTATAAAGAAGGAACGGGGC AGGGAAAAGGAAGGGGCGGGGAAAGGGAGTCTCTTGTGCTCACAGTGGGG CATACGGGTAGGGCGGGTGGGGGCGACACCAGACACGAACTCCGAGACCA CGACGTACCTGTAGGAGCGCACGTAGACCAGAGAGTGTGAGGAAATGCCA CGGTGTATACCGCGCACGAGCCAGGTCTATATATCCATCGATAGTCGATA TTCGATAGTGTGACCCACACTAAATCCAAGTTGTTAGCGACGCCACCCAC AGAATCAGTTGCGCCCGATAACTATCTACTGATTGCCTGACGGCAGGTCT GCGAACCTGGTGACGTAGGGGGGCACGGCCATACTGGTCGGTTACATGCC GTACTGATCTGTATATCTATCGATAGTCGATATTCGATAGTTTGGCCCGC ACTAAATCCAAGTAGATACATAGTAACACCACCCACAAATCCGTCTAGCC CGGTAGCTATCTACTGATTGCCTGACGGCAGGTCCGCGAACCTGGTGACT GTGGCGGGCACGGCCATACTGGTCGGTTACATGCCCGTGGTGAACCCCTG TGATGTTGATGTGATGTGATGTGATGTGATGTCAAACTACTCGTACAGTA AATTAGATTGCACATCACATCGTTGCATTGTATTCCACCACGGCCATACT GGTCGGTTGCATGCCGGTGGTGAACCAGTCCCCACTAAATCCAAGTAGCT ACTTCGAAGTACACACTGTAGTAGCACCACCCACAGAATCAGTCGAGCCC GACAACTATCTACTGGTCGTTATTGCCGTGTTTTTCCTGGTGGCAGGTCT GCCAACCTGGTGACGGTGGCGGGCATGGCGATACTGGTCGGTTTGATGCC CGTCGTGAACGAGTCCTGCCGGGTGCTGTGGCAAGAGTCCATCGACTATT TCTGGATGAGCCTGGTGAGACTGTACGCTGCAGTACAGTGCTGTACGCTG GTGTACACTGCGGTACTTTGTTGCTGTACACTGCTGTATACTGCTGTACT TCGTATACTAAACCTGTCCTGCCAGGTGCTGTGGAAAGAGTCCATGGACT ATTTCTGGATGAGCCTGGTGAGACTTCGGTAGGAGCTTTTGGGCAGGGCG GGGGTTTACGTACTGCTATAAAGTGCGGTGTACTGCTGTACGTTGTTTCT GTACACTGCTGTACTTTGTTGCTGTATACTACTGTACTCTGCTGTACACT GCGGCACTGCTGGACACTGCTGGACACAACTGTAATCTGCTGCACATTGC TGTACACTGCTGGACTCTGCTGGACACTACTGTACTCTCCTGTACACTGC TGTACGTTGTTTCTGTACAATGCTGGACACACCTGTACTCTGCTGTACAC TGCTGTACTCTGCTGGACACTACTGTACTCTCCTGTACACTGCTGCACTT TGCTGTGCACTGCTGGACCCAAATGTACTCTGCTGCATACTGCTGTATAC TGCTGTACACTGCTGCACTCTGCTGTACACTACTGTACACAACTGTGCTC GGCTGCACCACCACCACCACCACCACCACCACCACCACAGGACGACAGAC CCCACCCACACCGCTAAAGCCACAGCAACAACGATGGCCACCCCCCAACC GCTATCACCCCCAGGTGCTATTTTTCGTCATGCCGGTGTACACGGGAAGC TTCATCGCCCGTGCCGTGAGGTTGGCTGTGGTTTTCCACCCCAAGGCCCG CAGAAGGCTCCCATGGCTCATACCGGTGAGGCACGCCTTCCAAGAGCGGG GCAAGTGTATATTTACCTCTAAGCACTGGTACCTGGTAGTCCAGAGTACT ACATATACGGGTACCCCATGTGCCGTGCACTTGTAAAGTGCGAGTACTTC ATAATAGAAGTACTTCGAAGTACATACTGTAGTTTGTGTGCCGTGTACAG CATACTCATACTTCAAGTGTGAAGTATTTACCTCGAAGAACTTGGCAGTC CAGAGTTCTAGAATGTACGGGTTTAGGGTTAGGGTTGGCACATAACCCCT ACTACAGTAGGTGGTACTAGTTAGTTCCTTTGGCCTTTAAGAGAAACAAT TGAGTATGCTCTTTCCTAACGTTTTGTTTCAACTCACCGAATAATTGGCC GCTTCATCTGAAGGTGTCACGCCAAAACCTGGTACCTCAGCCTTCAGAAC AAATCTCAAAGTTGAAGGTCAGCACGTTGAAGTTGAAGGTTTTTCGGAAC TTGCTGGTGGCCCCGACTGTAGTAAGTGGTGCCCTTTTGGGCCCTTAATT AGAGGTAGCTAGGGGTAGTTAGACCTAAAATGAAGGCTGATTAGGCCCTA ATCAGCCTCTAAGTGCCAACCCTGCCCATGTGCCGTGGGATCACTTGCCC TGGCCGTTGATGGCCTGCCCGCCAGGAACACAACTACGTTACCCTCTCTT TATGTTTTTTATTCTTTGATGTGATAGCCACTCATACTAGAACACTCAAC CCTTAACTGGGATATCCACTACAACGACAACACTCAATCTCACACGCGTG CGATTGTACCTCTTTACGATTTACATGAATCACAGGAGCGCAACTACATT TTGGGCATCCTGCTGGCCGGCGTGTGCTTGCTGGCGTTGCCCATCTATCA CGATGAGACCATGCAGATCTGGTGAGAGAAGCTACTGTAGTTGGTAGCAC TACAGTCAGTCGTCGCAGTTAAAAGCTCGTTTTTCCCGATAGCAGGGGCA CCTTCGCTGTCCGTTTTGGAAAGTATGGTGCTGAGGAGATGGGGCTGTAT TGCCCGTCCCCCCGGCTCATTCCACGCCGATTTGCAGCACAATCGGGGCA GCAGTTCAGCCGTTGTCGATGTCCGAAAATCCGAAAATCATTTTTTAACT AGTTCGCTTGACTGCAGTAGTACAACGCAAAGCAGATGACTTGCTGGCGT TGCCCGTCTATCACGACGATACCGTGGAGATCTGGTGAGAGAAGTTGCTT AGTTTAGCACTTAGTAGTACAACCTGCTCCGTCTCGACAGACGTGCGCGG TCAATGGTCTCGGGACTGCGGCAAGCACAACGTGAGTGCAGATATATATG TACTTAGTAGTAGTACTCGGGTACAATGGTATACGTAGTAGGTAGTGCTC GAGTGCAATTGTATACATAATAAGTAGTACTCGAGTACAATGGTATACTG AGCAAGTAGTACTCGAGCACAGTGGTGTACTTGGCAAGTAGTACTCGAGT ACAATGGTATACTTAGCAAGTAGTACTCGAGTGCAATGGTATACTTAGCA AGTAGTACTCGAGTACAATGGTATACTTAGTAAGTAGTACAATGGTAAAC TTATGGTAAACCTAGTAAGTACTTCGTAGTGCTTGAGTAGTGGTACACTT AGCAAGTAGTACTCGAGTACAACAGTAAACTTAGTAAGTAGTATTCGAGT ACAATGGTACACTTAGTAAGTAGTAGTCAAGTACAATGGTATACTTAGCA AGTAGTACTCGAGTACAATGGTATACTTAGCAAGTAGTACTCGAGTTCAA TGGTACACTTGCTAAGTACTTCGTAGTACAATGATAAACAGTAACTCGCT GTGGTGTTTTTTGCAAGAAGACAAACTACTGTAGCGACTGGGAAAGAAGA GGTGTCCCTACTTACGCGAGTTCAGGGCCCCACCCCGGGAAGCCCTCCCT TTCACCCGCCTTCACTCGCAGGGCATACAGAGTTTAGCACTTAGAGTACA ACGGTAAACTTAGTAAGTAGTACTCGAGTACAGTGGTACACTTAGTAAGT ACTTCGTAGTACAACGGTAAACAGTATCTCGCTGTGGTGTTGCCCTTGGT CGCCGTAGGTATCGCCCCCAACTGAGGCCCCTTGATGTGATTTGATTTGA TTTGATGCGATGTGATGTGATGTGATGTGTACTCTAATGTGCACTTGTTT GCCATCACAGCCTTGATTTGATGTGATGTGATGCGATGTGATGTGATGTG ATGTGTACTCTAATGTGCAGTTGCTTGCCTTGCTGTGAAGTGATGTGATG TGATGCGATGTGATGTGTACTCTATTGTGCTCTTGTTTGCCATCACACCA CAACAAAGTCCGGCGAGGGGTGTAGTGGGATGCTATGCGATGTGATGCGA TGTGATGTGCTGGCATCCCTCGTTAAGCTCCTGTGCTGTCGAGTCGCTGC ACTCGTGCAGTATGTACTACAGTACAGTACCGTATATACTACAGTACAGT ACAGTACAATACGGTACTCGAGGACTGTACGGCTTGGGCCCCGCCACCAT GTACAGTACCGCCAATGGCCACTGCAAAGACACTGTGATTTTGACGCGGT CGGCCCTGTATTGTACAGCAGCAACATGCCCCTGCCCCCAAGTACCGGAG AATAGGCTGTCAGAACGGCCGTCGAAGGGTCCGGCCTGGGGTGCTACTCC CGTGTCGGAATGGTGGGGAATGCCACTAGACTACTACAGTAGTTATTTAG CCATATACTGTAAGTACTACGTACCATATATACAGTCAAACCATTTGAGG ACTACTAACTATACTATATAGTTAGTCGAAACTTCCGCTTAAGTATACTA TATAGCTAGTCGAAACTTATATATATATGCAGTCGAACCGTTTGAGGACT ACTAACTACTTCCGGAAGTATACGAGATAGTTAATTTGAAACCTCGGGTT TGCCCTCCGATGGGAGTAGCTATTTAGCCATGGAGACGTGGCAACATCAT ACTACAGTAGGTGGTACTAGCTAGTTCCTTTGGCCTTGAAGAGAAACAAT TGAGTATGCTCTTTCCTAACCTTTTGCTCCAACCTACCGAACAATTGGCT GCTTCATCTGAAGGTATCACGTCAAAACCTTATACCTCAGCCTTCAGAAC AAATCTCAAGTTGAAGGTCAGCACGTTGAAGTTGAAGGTTTTTCGGAACT TACTGGTGGCCCCGACTGCAGCAGCCTGCGCAGGTTGGTCCAACGCCGTT GCACGCCGTTCTGACATACTTCGAAGTAGGTCACCTGAAACTGTCTTCTG CGTGGCCTGATTGGTGGAGGTTTTTGTGCTCGAGGAAGGGTTGGTCCAGA CGCTATCTCTGGGCTATGTTAACCCTTTTTACCCCGGGCAAATTGGACAT ACACACTACCCCTATGATTATATGGACCCCAGGGGTAACAGGGCTAAGTA GCCCCGGCCGGGCTTAGAGGTGTGATTTGCCTGGTGCACGAGGCAAGCCA GAGCAGTACTGTACACCTTTCTCTTCTTCTTCCTCTTCCTCCTCCCTCCC GCTCCTCCCCCTCCCCCTCCCTCTCGCCCTCTCCTTTACTATTAATCCTC TCCCTTCTGGACACTCAACGTGCCCGCCCCCCCCACCCCACCCCACCCCC CCCGCCGGCAGGGACATCGGGCCCCCTCACATCGAGGTCCTCAAGCGCGT GTCCCTCGGCTTCAATTTTATTCATGTATTTTAGTTGCTTATGTATTGAT CCTCTTCCTTCTGGACACTCAACGTGCCCCCCCCCCCCCACACCGGCAGG GACATCGCCCCCCTTCACATCGAGATCCTCGAGTACATGTCCCTGGGCTT CTCGGCGGTGCTGGCTGCGCTCTACCCC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig90:204526..210803+

>mRNA_S-ischiensis_contig90.20860.1 ID=mRNA_S-ischiensis_contig90.20860.1|Name=mRNA_S-ischiensis_contig90.20860.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=966bp|location=Sequence derived from alignment at S-ischiensis_contig90:204526..210803+ (Schizocladia ischiensis KU_0333)
ATGGTGTACTCCAGCCTGTTTGTGGTCTTGGGCTCGTGGGTGCTCTTCAA
CTTCTACAAGTCGCGCTGGGTCCTGGACATTCGCACAAGATGGTGTACTC
CAGCCTGTTTGTGGTCTTGGGCTCGTGGGTGCTCTTCAACTTCTACAAGT
CGCGCTGGGTCCTGGACATTCGCACAAGGTCTGCCAACCTGGTGACGGTG
GCGGGCATGGCGATACTGGTCGGTTTGATGCCCGTCGTGAACGAGTCCTG
CCGGGTGCTGTGGCAAGAGTCCATCGACTATTTCTGGATGAGCCTGGTCT
GCCAACCTGGTGACGGTGGCGGGCATGGCGATACTGGTCGGTTTGATGCC
CGTCGTGAACGAGTCCTGCCGGGTGCTGTGGCAAGAGTCCATCGACTATT
TCTGGATGAGCCTGGTGCTATTTTTCGTCATGCCGGTGTACACGGGAAGC
TTCATCGCCCGTGCCGTGAGGTTGGCTGTGGTTTTCCACCCCAAGGCCCG
CAGAAGGCTCCCATGGCTCATACCGGTGCTATTTTTCGTCATGCCGGTGT
ACACGGGAAGCTTCATCGCCCGTGCCGTGAGGTTGGCTGTGGTTTTCCAC
CCCAAGGCCCGCAGAAGGCTCCCATGGCTCATACCGGAGCGCAACTACAT
TTTGGGCATCCTGCTGGCCGGCGTGTGCTTGCTGGCGTTGCCCATCTATC
ACGATGAGACCATGCAGATCTGGAGCGCAACTACATTTTGGGCATCCTGC
TGGCCGGCGTGTGCTTGCTGGCGTTGCCCATCTATCACGATGAGACCATG
CAGATCTGGGACATCGCCCCCCTTCACATCGAGATCCTCGAGTACATGTC
CCTGGGCTTCTCGGCGGTGCTGGCTGCGCTCTACCCCGGACATCGCCCCC
CTTCACATCGAGATCCTCGAGTACATGTCCCTGGGCTTCTCGGCGGTGCT
GGCTGCGCTCTACCCC
back to top