mRNA_S-ischiensis_contig90.20860.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig90.20860.1 vs. uniprot
Match: D7G2T8_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T8_ECTSI) HSP 1 Score: 174 bits (442), Expect = 1.960e-48 Identity = 81/167 (48.50%), Postives = 121/167 (72.46%), Query Frame = 1
Query: 1 ALAWFRMVYSSLFVVLGSWVLFNFYKSRWVLDIRTRSANLVTVAGMAILVGLMPVVNESCRVLWQESIDYFWMSLVLFFVMPVYTGSFIARAVRLAVVFHPKARRRLPWLIPERNYILGILLAGVCLLALPIYHDETMQIWDIAPLHIEILEYMSLGFSAVLAALYP 501
ALA R+ F+VLG++ L FY+SRW+LDIRTRSA+LVT+ G+++L+ ++ VN + ++W +D+FW+SL+LFFV P GS+I RA+RLAVVF+P+A+ LPWLIPERNY+ +LLA + +LA+PIYH+ T+++WD P IL+ + + +L +YP
Sbjct: 62 ALALVRLGLGCCFIVLGTYALVRFYRSRWILDIRTRSAHLVTLQGVSLLLSMLVTVNGATTIVWDSGLDWFWISLLLFFVSPALFGSYICRALRLAVVFNPRAKSALPWLIPERNYLAVLLLASIGILAIPIYHEYTLEVWDAIPKQTSILKAQARVLAVMLVCIYP 228
BLAST of mRNA_S-ischiensis_contig90.20860.1 vs. uniprot
Match: A0A6H5JE98_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE98_9PHAE) HSP 1 Score: 165 bits (418), Expect = 4.920e-45 Identity = 81/167 (48.50%), Postives = 115/167 (68.86%), Query Frame = 1
Query: 1 ALAWFRMVYSSLFVVLGSWVLFNFYKSRWVLDIRTRSANLVTVAGMAILVGLMPVVNESCRVLWQESIDYFWMSLVLFFVMPVYTGSFIARAVRLAVVFHPKARRRLPWLIPERNYILGILLAGVCLLALPIYHDETMQIWDIAPLHIEILEYMSLGFSAVLAALYP 501
ALA R+ F+VLG+ L FY+S+W+LDIRTRSA LV V G+A ++ ++ VN+S V+W D+FW+SL+LFF+ P GS+I RA+RLAVVFHP+ +R LPWLIPE NY++ +L+A V +LA+PIYH+ T+ +WD IL+ + + LA +YP
Sbjct: 51 ALALVRLGVGCCFIVLGTCALVRFYRSKWILDIRTRSAYLVMVGGVAGILTMLVTVNDSTTVVWDIGFDWFWISLLLFFISPALFGSYICRALRLAVVFHPRVKRALPWLIPEHNYMVVLLVASVGMLAIPIYHEYTLGVWDAISKQTNILKIEARVLAVALACIYP 217
BLAST of mRNA_S-ischiensis_contig90.20860.1 vs. uniprot
Match: D7FTW0_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW0_ECTSI) HSP 1 Score: 159 bits (402), Expect = 2.460e-43 Identity = 79/167 (47.31%), Postives = 112/167 (67.07%), Query Frame = 1
Query: 1 ALAWFRMVYSSLFVVLGSWVLFNFYKSRWVLDIRTRSANLVTVAGMAILVGLMPVVNESCRVLWQESIDYFWMSLVLFFVMPVYTGSFIARAVRLAVVFHPKARRRLPWLIPERNYILGILLAGVCLLALPIYHDETMQIWDIAPLHIEILEYMSLGFSAVLAALYP 501
ALA FR+ F+VLG+ L FY+ + +LDIRTRSA LV V G+A ++ ++ VN++ V+W D+FW SL LFF+ P G +I RA+RLAVVFHP+ +R LPWLIPERNY++ +L+A V +LA+PIYH+ T+ +WD IL+ + + LA +YP
Sbjct: 51 ALALFRLGVGCCFIVLGTCALARFYRLKQILDIRTRSAYLVMVGGVAGILTMLVTVNDATTVIWDTGFDWFWTSLFLFFISPALFGRYICRALRLAVVFHPRVKRALPWLIPERNYMVVLLVASVGMLAIPIYHEHTLGVWDAISKQTTILKIEARVLAVALACIYP 217
BLAST of mRNA_S-ischiensis_contig90.20860.1 vs. uniprot
Match: D7G2T7_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2T7_ECTSI) HSP 1 Score: 144 bits (363), Expect = 1.390e-37 Identity = 66/132 (50.00%), Postives = 96/132 (72.73%), Query Frame = 1
Query: 106 RSANLVTVAGMAILVGLMPVVNESCRVLWQESIDYFWMSLVLFFVMPVYTGSFIARAVRLAVVFHPKARRRLPWLIPERNYILGILLAGVCLLALPIYHDETMQIWDIAPLHIEILEYMSLGFSAVLAALYP 501
RSA+LV V G+ +L+ ++ VN S V+W +D+FWMSL+LFF+ P GS+I RA+RLAVVFHP+A+R LPWLIPERNY++ +L+ V ++A+PIY + T+++W+I P IL +L F+ LA +YP
Sbjct: 3 RSAHLVMVEGVCVLLTMVVAVNGSINVVWDSGLDWFWMSLLLFFISPALKGSYICRALRLAVVFHPRAKRALPWLIPERNYMVVLLVVSVGMMAIPIYQEYTLEVWEIIPKQTTILTTEALVFAVTLACIYP 134
BLAST of mRNA_S-ischiensis_contig90.20860.1 vs. uniprot
Match: D8LJQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ7_ECTSI) HSP 1 Score: 135 bits (340), Expect = 7.290e-37 Identity = 57/116 (49.14%), Postives = 87/116 (75.00%), Query Frame = 1
Query: 154 LMPVVNESCRVLWQESIDYFWMSLVLFFVMPVYTGSFIARAVRLAVVFHPKARRRLPWLIPERNYILGILLAGVCLLALPIYHDETMQIWDIAPLHIEILEYMSLGFSAVLAALYP 501
++ VN + ++W +D+FW+SL+LFFV P GS+I RA+RLAVVFHPKA+R LPWLIPERNY+ +++A +LA+P+YH+ T+++W+I P +IL ++S+ F+ V A +YP
Sbjct: 1 MLAAVNGAINIVWDSGLDWFWVSLLLFFVSPALFGSYICRALRLAVVFHPKAKRALPWLIPERNYVAVLMVASCGMLAIPLYHEYTLEVWEIIPKQTDILIWVSIAFAVVQACIYP 116
BLAST of mRNA_S-ischiensis_contig90.20860.1 vs. uniprot
Match: A0A6H5LEP9_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEP9_9PHAE) HSP 1 Score: 140 bits (352), Expect = 6.230e-36 Identity = 67/149 (44.97%), Postives = 102/149 (68.46%), Query Frame = 1
Query: 67 NFYKSR----WVLDIRTRSANLVTVAGMAILVGLMPVVNESCRVLWQESIDYFWMSLVLFFVMPVYTGSFIARAVRLAVVFHPKARRRLPWLIPERNYILGILLAGVCLLALPIYHDETMQIWDIAPLHIEILEYMSLGFSAVLAALYP 501
N Y SR +V RSA+LVT+ G+++L ++ VN++ ++W +D+FW+SL+LFFV P GS+I RA+RLAVVF+P+A+R LPWLIPERNY+ +LLA + +LA+PIY + T+++WD P IL+ + + +L +YP
Sbjct: 2 NHYSSRPGFQFVTYRMARSAHLVTLQGVSLLFSMLVTVNDATTIVWDSGLDWFWISLLLFFVSPALFGSYICRALRLAVVFNPRAKRALPWLIPERNYLAVLLLASIGILAIPIYQEYTLEVWDAIPKQTSILKTQARVLAVMLVCIYP 150
BLAST of mRNA_S-ischiensis_contig90.20860.1 vs. uniprot
Match: D7FTW2_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW2_ECTSI) HSP 1 Score: 126 bits (316), Expect = 8.760e-32 Identity = 56/125 (44.80%), Postives = 86/125 (68.80%), Query Frame = 1
Query: 127 VAGMAILVGLMPVVNESCRVLWQESIDYFWMSLVLFFVMPVYTGSFIARAVRLAVVFHPKARRRLPWLIPERNYILGILLAGVCLLALPIYHDETMQIWDIAPLHIEILEYMSLGFSAVLAALYP 501
V G+A ++ ++ VN++ V+W D+FW SL+LFF+ P GS+I RA+RLAVVFHP+ +R LPWL+PERNY++ +L++ V +LA+PIYH+ T+ +WD IL+ + + LA +YP
Sbjct: 2 VGGVAGILTMLVTVNDATTVIWDTGFDWFWTSLLLFFISPALFGSYICRALRLAVVFHPRVKRALPWLVPERNYMVVLLVSSVGMLAIPIYHEHTLGVWDAISKQTTILKIEARVLAVALACIYP 126
BLAST of mRNA_S-ischiensis_contig90.20860.1 vs. uniprot
Match: D8LJQ9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ9_ECTSI) HSP 1 Score: 119 bits (299), Expect = 1.680e-29 Identity = 54/127 (42.52%), Postives = 89/127 (70.08%), Query Frame = 1
Query: 127 VAGMAILVGLMPVVNESCRVLWQE--SIDYFWMSLVLFFVMPVYTGSFIARAVRLAVVFHPKARRRLPWLIPERNYILGILLAGVCLLALPIYHDETMQIWDIAPLHIEILEYMSLGFSAVLAALYP 501
+AG +++V + VN+S +LW S+D+FW+SL+LF V+P+ GS+I RA+RLAV+FHP+A++ LPWLIPERN++ + V LL +PIY D T+++W++ +++L +L + LA ++P
Sbjct: 1 MAGSSMVVSYLAAVNQSLFILWGATYSLDWFWISLLLFSVLPLVFGSYICRALRLAVIFHPRAKQALPWLIPERNHLFFLSAMAVALLIIPIYQDMTLEVWEVIAKQVDLLASATLVLAGTLACIFP 127
BLAST of mRNA_S-ischiensis_contig90.20860.1 vs. uniprot
Match: A0A6H5L7K1_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7K1_9PHAE) HSP 1 Score: 106 bits (265), Expect = 6.260e-24 Identity = 48/103 (46.60%), Postives = 75/103 (72.82%), Query Frame = 1
Query: 127 VAGMAILVGLMPVVNESCRVLWQE--SIDYFWMSLVLFFVMPVYTGSFIARAVRLAVVFHPKARRRLPWLIPERNYILGILLAGVCLLALPIYHDETMQIWDI 429
+AG +++V + VN+S +LW S+D+FW+SL+LF V+P+ GS+I RA+RLAV+FHP+A++ LPWLIPERN++ + V L +PIY D T+++W +
Sbjct: 1 MAGSSMVVSYVAAVNQSLFILWGATYSLDWFWISLLLFSVLPLVFGSYICRALRLAVIFHPRAKQALPWLIPERNHLFFLSATVVAFLIVPIYQDMTLEVWKV 103
BLAST of mRNA_S-ischiensis_contig90.20860.1 vs. uniprot
Match: D7FTW1_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW1_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 2.800e-18 Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 106 RSANLVTVAGMAILVGLMPVVNESCRVLWQESIDYFWMSLVLFFVMPVYTGSFIARAVRLAVVFHPKARRRLPWLIP 336
RSA LV V G+ L+ ++ +N S V+W +DYFW+SL+LF V+P GS+I R +RLAVVFHP+A+R LPWLIP
Sbjct: 3 RSAYLVMVEGVCALLTMLVTLNSSINVVWDCGLDYFWVSLLLFLVVPTLLGSYICRVLRLAVVFHPRAKRALPWLIP 79 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig90.20860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig90.20860.1 >prot_S-ischiensis_contig90.20860.1 ID=prot_S-ischiensis_contig90.20860.1|Name=mRNA_S-ischiensis_contig90.20860.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=161bp MVYSSLFVVLGSWVLFNFYKSRWVLDIRTRSANLVTVAGMAILVGLMPVVback to top mRNA from alignment at S-ischiensis_contig90:204526..210803+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig90.20860.1 ID=mRNA_S-ischiensis_contig90.20860.1|Name=mRNA_S-ischiensis_contig90.20860.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6278bp|location=Sequence derived from alignment at S-ischiensis_contig90:204526..210803+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig90:204526..210803+ >mRNA_S-ischiensis_contig90.20860.1 ID=mRNA_S-ischiensis_contig90.20860.1|Name=mRNA_S-ischiensis_contig90.20860.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=966bp|location=Sequence derived from alignment at S-ischiensis_contig90:204526..210803+ (Schizocladia ischiensis KU_0333)back to top |