mRNA_S-ischiensis_contig90.20848.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig90.20848.1
Unique NamemRNA_S-ischiensis_contig90.20848.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig90.20848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig90contigS-ischiensis_contig90:82344..83666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size247
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig90.20848.1prot_S-ischiensis_contig90.20848.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig90 82344..83651 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817407.077837-CDS-S-ischiensis_contig90:82343..824421622817407.077837-CDS-S-ischiensis_contig90:82343..82442Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 82344..82442 -
1695741091.5979064-CDS-S-ischiensis_contig90:82343..824421695741091.5979064-CDS-S-ischiensis_contig90:82343..82442Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 82344..82442 -
1622817407.0891645-CDS-S-ischiensis_contig90:83519..836511622817407.0891645-CDS-S-ischiensis_contig90:83519..83651Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 83520..83651 -
1695741091.6078262-CDS-S-ischiensis_contig90:83519..836511695741091.6078262-CDS-S-ischiensis_contig90:83519..83651Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 83520..83651 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817407.0999484-UTR-S-ischiensis_contig90:83651..836661622817407.0999484-UTR-S-ischiensis_contig90:83651..83666Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 83652..83666 -
1695741091.6208735-UTR-S-ischiensis_contig90:83651..836661695741091.6208735-UTR-S-ischiensis_contig90:83651..83666Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 83652..83666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig90.20848.1

>prot_S-ischiensis_contig90.20848.1 ID=prot_S-ischiensis_contig90.20848.1|Name=mRNA_S-ischiensis_contig90.20848.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=77bp
MGELSAPLTACEVSTSTSLLAGECFSATPGPGDKSVAMLLSPSQETMDRG
GGTYTPLLLGDPQTTPAGRKTPDQPQL
back to top

mRNA from alignment at S-ischiensis_contig90:82344..83666-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig90.20848.1 ID=mRNA_S-ischiensis_contig90.20848.1|Name=mRNA_S-ischiensis_contig90.20848.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1323bp|location=Sequence derived from alignment at S-ischiensis_contig90:82344..83666- (Schizocladia ischiensis KU_0333)
GAGGAAGAGGAGACTATGGGCGAGTTATCGGCACCCTTGACGGCGTGCGA
GGTATCGACGTCCACATCCTTGCTGGCCGGCGAGTGCTTCAGCGCCACCC
CTGGCCCGGGAGACAAGTCCGTTGCCATGCTGCTCTCGCCTTCCCAGGTG
AGGAACAAACCGAGGCCTGTTTCCCGGCGTCCGTGATGGAATATCTAGGC
TAATCAACCTATTTATCAACAGCAGTGATACATGTATCTATCGACAGTCG
ATATTCGACAGTTTGACCCACACTGTACCCAAGTAGTTAGTAACGCCACC
CACCATCAGTCGAGCCCGAGAACTATCTACTGATCGATATTCCATACCTG
CCCGGCGTAAACCTTCGCACCGCGAGCCGAAGCAAGCCGCTCACTCACAC
GGATGTGAATAGTCGTGGTGTAGTCGAGCAAGTAGTGGCCCAGGGGTTGC
GAGGGGGAGGGGGTACGGTGGAGTGCAGTTCGTCTTTTTTCAGCACTGTC
AGGTTGGAATCATGCCCTTTGTTTGCCTTTAACGCTTTTACCCCTGCTTT
ATTGGAGTTGCACACTGAAACCCTATGATTATACGGACCCCAGGGGTAAA
AGGGTTGAAAACGTCCCGTGCGGCCTGTGGCACTCACGAAAGAACTGCCG
ATGCAGCCCAGTAGGAATTTCTGGTCAGGGCCAGGCGTTCATTTCGGTCG
TGGTCGTGAGGTTGGGGATATTTTGAGCGCCGCGACACGGGGTCTCGGGA
ATACACAAACCGACCCTCAGGCCCGCACACGTCGGCCTCGGTGCCGACGC
TGAATAACGTAGCGCACCACTGTACTTGTTATTGCTTTGAAGCGAATTCG
TACGCTGGTATGTACTTCCAAGTACTCCTAAGTACAGTACGAGTGCTACT
TTGAAACTTACCTTAGGCGACACTAGAGCTATACCCTCCAAAGTACAGTA
GGTACCACCTTACAGCCTTGTTGCTGCCGATGAGGATGCGAGCCCCACCC
CTTTCACAGCGCCCGCCTCCCCCCCCCCTGGGCCTCCTCCTCATCCGCCC
CCCCTCCCCGCCCACGCACGCAAACAAACACACACCACACCACACCACAA
TCAACGGCTTCTCGTCTGTCTCTCCCCCCCCCCAACCCCCCCCCCTCTCT
TCCTCTCTCTCTGTGTTTCTCTCTCTTTTCTCTCTCCTTCTGTCTCCCTC
TCTCCTTCATTCTGTTCTCCACAGGAGACCATGGACCGCGGCGGCGGCAC
ATACACGCCCCTCCTCCTGGGCGACCCGCAAACCACGCCTGCTGGAAGAA
AAACTCCTGACCAGCCCCAGCTA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig90:82344..83666-

>mRNA_S-ischiensis_contig90.20848.1 ID=mRNA_S-ischiensis_contig90.20848.1|Name=mRNA_S-ischiensis_contig90.20848.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=462bp|location=Sequence derived from alignment at S-ischiensis_contig90:82344..83666- (Schizocladia ischiensis KU_0333)
ATGGGCGAGTTATCGGCACCCTTGACGGCGTGCGAGGTATCGACGTCCAC
ATCCTTGCTGGCCGGCGAGTGCTTCAGCGCCACCCCTGGCCCGGGAGACA
AGTCCGTTGCCATGCTGCTCTCGCCTTCCCAGATGGGCGAGTTATCGGCA
CCCTTGACGGCGTGCGAGGTATCGACGTCCACATCCTTGCTGGCCGGCGA
GTGCTTCAGCGCCACCCCTGGCCCGGGAGACAAGTCCGTTGCCATGCTGC
TCTCGCCTTCCCAGGAGACCATGGACCGCGGCGGCGGCACATACACGCCC
CTCCTCCTGGGCGACCCGCAAACCACGCCTGCTGGAAGAAAAACTCCTGA
CCAGCCCCAGCTAGAGACCATGGACCGCGGCGGCGGCACATACACGCCCC
TCCTCCTGGGCGACCCGCAAACCACGCCTGCTGGAAGAAAAACTCCTGAC
CAGCCCCAGCTA
back to top