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Homology
BLAST of mRNA_S-ischiensis_contig9.20819.1 vs. uniprot
Match: D7FQY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY2_ECTSI) HSP 1 Score: 102 bits (253), Expect = 4.540e-23 Identity = 56/138 (40.58%), Postives = 81/138 (58.70%), Query Frame = 2
Query: 185 LQELYDRLSADVTGVFDVLGEVLPLVEAVEAEDFKQRAAWGRAWTPMRATVAEVPDT-------FTISVLILPRGTRLGWYRNSGGETLSKQLFGNVQVSALELQANERGRDLLPSELKVMFGDAFADGGSADSDCVC 577
LQ L + L AD + D L V L+ V+++ F Q + W R+WT MR VA+ +T ++SVL+LPRGT+L W+R + S+QLFGN+ + ELQ ++ R L EL+ + D +A GGS +SDCVC
Sbjct: 14 LQRLAEALRAD-PNLAD-LHNVEELMTEVDSDAFPQASVWERSWTSMRCVVADTAETPPSLSTCISMSVLVLPRGTKLEWHRYHEARSFSRQLFGNLSICDAELQGSDNARKLEQQELEATYADGWAVGGSEESDCVC 149
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-09_003310.1 |
| Hectar predicted targeting category | signal peptide |
| Exons | 4 |
| Model size | 578 |
| Cds size | 549 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817404.2263334-UTR-S-ischiensis_contig9:3515958..3515986 | 1622817404.2263334-UTR-S-ischiensis_contig9:3515958..3515986 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 3515959..3515986 + |
| 1695741089.288062-UTR-S-ischiensis_contig9:3515958..3515986 | 1695741089.288062-UTR-S-ischiensis_contig9:3515958..3515986 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 3515959..3515986 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817404.240105-CDS-S-ischiensis_contig9:3515986..3516175 | 1622817404.240105-CDS-S-ischiensis_contig9:3515986..3516175 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 3515987..3516175 + |
| 1695741089.2973468-CDS-S-ischiensis_contig9:3515986..3516175 | 1695741089.2973468-CDS-S-ischiensis_contig9:3515986..3516175 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 3515987..3516175 + |
| 1622817404.2522976-CDS-S-ischiensis_contig9:3516334..3516500 | 1622817404.2522976-CDS-S-ischiensis_contig9:3516334..3516500 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 3516335..3516500 + |
| 1695741089.3060951-CDS-S-ischiensis_contig9:3516334..3516500 | 1695741089.3060951-CDS-S-ischiensis_contig9:3516334..3516500 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 3516335..3516500 + |
| 1622817404.2644074-CDS-S-ischiensis_contig9:3517009..3517111 | 1622817404.2644074-CDS-S-ischiensis_contig9:3517009..3517111 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 3517010..3517111 + |
| 1695741089.3149529-CDS-S-ischiensis_contig9:3517009..3517111 | 1695741089.3149529-CDS-S-ischiensis_contig9:3517009..3517111 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 3517010..3517111 + |
| 1622817404.276427-CDS-S-ischiensis_contig9:3517663..3517755 | 1622817404.276427-CDS-S-ischiensis_contig9:3517663..3517755 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 3517664..3517755 + |
| 1695741089.3236072-CDS-S-ischiensis_contig9:3517663..3517755 | 1695741089.3236072-CDS-S-ischiensis_contig9:3517663..3517755 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 3517664..3517755 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20819.1 >prot_S-ischiensis_contig9.20819.1 ID=prot_S-ischiensis_contig9.20819.1|Name=mRNA_S-ischiensis_contig9.20819.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=183bp
MRAIHATLAACCGTGLAMAWVAPPRVVCASKFRRQPPTDAARAAASDTTV
QPLQELYDRLSADVTGVFDVLGEVLPLVEAVEAEDFKQRAAWGRAWTPMR
ATVAEVPDTFTISVLILPRGTRLGWYRNSGGETLSKQLFGNVQVSALELQ
ANERGRDLLPSELKVMFGDAFADGGSADSDCVC back to topmRNA from alignment at S-ischiensis_contig9:3515959..3517755+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig9.20819.1 ID=mRNA_S-ischiensis_contig9.20819.1|Name=mRNA_S-ischiensis_contig9.20819.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1797bp|location=Sequence derived from alignment at S-ischiensis_contig9:3515959..3517755+ (Schizocladia ischiensis KU_0333)
GGCCAGGGCCTGTCTGCGCTCTATCATCATGAGAGCAATACATGCCACAC
TGGCTGCCTGCTGTGGGACAGGACTCGCTATGGCTTGGGTTGCACCCCCC
AGGGTGGTCTGCGCCTCGAAATTTCGACGTCAACCCCCAACAGATGCAGC
CCGGGCAGCGGCATCGGACACAACAGTGCAGCCATTGCAAGAGCTCTACG
ATCGCCTGTCTGCTGACGTGAGTCTGTGCAACGGGTAGTGGGGGCCATCT
CACGTGTATATTTTTCTTGACCACCGTGGTATGTTGACTGCTGGTCGTGC
GCCCCCCCCGAGCTCGAGCAACAACTCGGCGCACCTGTCTGAAAGGTGTA
GTTGACGACTGACAGTTCGCCAACAGGTGACGGGGGTGTTTGACGTTCTG
GGAGAAGTTCTTCCGCTTGTGGAGGCGGTGGAGGCGGAGGACTTCAAGCA
GCGTGCTGCCTGGGGCAGGGCCTGGACTCCCATGCGCGCCACAGTCGCGG
AAGTGCCGGACACATTCACCATCTCCGTGCTGATCCTTCCACGTGAGACA
GACCGCGGCTGAAAACGATTTAACAAGTTTTATCAGTGCATAGCGATGGG
AATTTACACACAGCTGAAACGCACTCTTCCAAGTATGCCGTCGCAGGCCT
GAATAGGATACTCTACCAGTAAACTGCGTGATGGTTGATCCTTCCATGTG
AGACACACCGCGGCTTGTCAAGATTGGTGCATAGTGATGGGTCGGGGCAA
TACCCACAACTGAAGCACATTATTCCAGGTATGCATGCGTAGGCCCGACT
AGGATGCTCTCTCAGTAAATTGCTTGCTGGTTTATCCTTCCACGCGAGGC
AAACCACAGCTGCTCAATCTGTAGCGACAAGCTTTTCAGTGCATTGCCAT
GGATCGGGGCGACGTACGCACCTGAACACGCAAGTATGCATGCGTAGAGC
AGACCTGGATATGATGATCTCTCAGTGGAATTCAGGCTTGGCAAGTCTTG
CTCAAGGCGTACAGCTGATACTTCGAGGTATCCTTTGCTCATCTGGCACA
GGTGGAACGAGGCTCGGCTGGTACAGGAACTCTGGAGGGGAGACCCTGTC
CAAGCAGCTCTTTGGCAATGTGCAGGTCTCAGCCCTGGAACTGCAGGCCA
ACGGTAAGCCTGAACAGCGGTGGGTGGTGGTGACGGCGGCAGTAACGTGC
TTGCACTGTACCAATACTAGTACTTTGAAGCAGTACACACGTACCATGAA
GCGCCTCGGTGTGCTTCAAAGTACATAGTACTGTACTTCAAAGCGTTATA
CAGAAGGCAGCCTTCAGTACCGTACTGTGACAGTGAAACAAATGTTGTAG
CACGTTTGCTACCCGACTGCCGGCCTTTCCTGTCCTCCCTCCATCCCGGC
GCTGCCCATACCCACCGCTACGGTCAAGTTGAGGTCTGACACTTTCGAGG
TACGTACTACTACACAAACTTCCCCTGATGAGCTAAGGAAGGGCCACTGT
TGAGGTCGTTAGTGACGTGGCCTACACCTCGCCCCGTGTTGTTCCTTACA
CTACTTCACGATGTACGTACTGTAGTACATTGTGTATAACCGCCGCCCTT
GCTGCAGTTTTGGCGATTGTCTCTTCAACCAGCCATCGTCTTTTTATTTT
ATGGCGACCTCCCTCCCCCGGCCCCCAAACCGGCCGCAATTCGAATGACT
CAAAGAACGGGGGAGGGACCTGCTGCCGAGCGAGTTGAAGGTGATGTTCG
GGGACGCGTTTGCGGACGGGGGCAGCGCCGACAGCGACTGTGTCTGC back to topCoding sequence (CDS) from alignment at S-ischiensis_contig9:3515959..3517755+ >mRNA_S-ischiensis_contig9.20819.1 ID=mRNA_S-ischiensis_contig9.20819.1|Name=mRNA_S-ischiensis_contig9.20819.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1098bp|location=Sequence derived from alignment at S-ischiensis_contig9:3515959..3517755+ (Schizocladia ischiensis KU_0333)
ATGAGAGCAATACATGCCACACTGGCTGCCTGCTGTGGGACAGGACTCGC
TATGGCTTGGGTTGCACCCCCCAGGGTGGTCTGCGCCTCGAAATTTCGAC
GTCAACCCCCAACAGATGCAGCCCGGGCAGCGGCATCGGACACAACAGTG
CAGCCATTGCAAGAGCTCTACGATCGCCTGTCTGCTGACATGAGAGCAAT
ACATGCCACACTGGCTGCCTGCTGTGGGACAGGACTCGCTATGGCTTGGG
TTGCACCCCCCAGGGTGGTCTGCGCCTCGAAATTTCGACGTCAACCCCCA
ACAGATGCAGCCCGGGCAGCGGCATCGGACACAACAGTGCAGCCATTGCA
AGAGCTCTACGATCGCCTGTCTGCTGACGTGACGGGGGTGTTTGACGTTC
TGGGAGAAGTTCTTCCGCTTGTGGAGGCGGTGGAGGCGGAGGACTTCAAG
CAGCGTGCTGCCTGGGGCAGGGCCTGGACTCCCATGCGCGCCACAGTCGC
GGAAGTGCCGGACACATTCACCATCTCCGTGCTGATCCTTCCACGTGACG
GGGGTGTTTGACGTTCTGGGAGAAGTTCTTCCGCTTGTGGAGGCGGTGGA
GGCGGAGGACTTCAAGCAGCGTGCTGCCTGGGGCAGGGCCTGGACTCCCA
TGCGCGCCACAGTCGCGGAAGTGCCGGACACATTCACCATCTCCGTGCTG
ATCCTTCCACGTGGAACGAGGCTCGGCTGGTACAGGAACTCTGGAGGGGA
GACCCTGTCCAAGCAGCTCTTTGGCAATGTGCAGGTCTCAGCCCTGGAAC
TGCAGGCCAACGGTGGAACGAGGCTCGGCTGGTACAGGAACTCTGGAGGG
GAGACCCTGTCCAAGCAGCTCTTTGGCAATGTGCAGGTCTCAGCCCTGGA
ACTGCAGGCCAACGAACGGGGGAGGGACCTGCTGCCGAGCGAGTTGAAGG
TGATGTTCGGGGACGCGTTTGCGGACGGGGGCAGCGCCGACAGCGACTGT
GTCTGCAACGGGGGAGGGACCTGCTGCCGAGCGAGTTGAAGGTGATGTTC
GGGGACGCGTTTGCGGACGGGGGCAGCGCCGACAGCGACTGTGTCTGC back to top
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