mRNA_S-ischiensis_contig9.20815.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20815.1
Unique NamemRNA_S-ischiensis_contig9.20815.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3497529..3498186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size658
Cds size543
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817373.7809536-CDS-S-ischiensis_contig9:3497528..34980711622817373.7809536-CDS-S-ischiensis_contig9:3497528..3498071Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3497529..3498071 +
1695741064.5120692-CDS-S-ischiensis_contig9:3497528..34980711695741064.5120692-CDS-S-ischiensis_contig9:3497528..3498071Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3497529..3498071 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817373.7930598-UTR-S-ischiensis_contig9:3498071..34981861622817373.7930598-UTR-S-ischiensis_contig9:3498071..3498186Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3498072..3498186 +
1695741064.5265944-UTR-S-ischiensis_contig9:3498071..34981861695741064.5265944-UTR-S-ischiensis_contig9:3498071..3498186Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3498072..3498186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20815.1prot_S-ischiensis_contig9.20815.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3497529..3498071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20815.1

>prot_S-ischiensis_contig9.20815.1 ID=prot_S-ischiensis_contig9.20815.1|Name=mRNA_S-ischiensis_contig9.20815.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=181bp
PSNAFQVRPPRRARRGLGGEGPPAPATATAAAAVPVKQPQQRQSRRPHPA
RWPARYRPRPHQAPAAAAATAPIKALEPSLAYRRRRRAWVNPRARGRTQS
LGQLPVTVLHGPGFQQRLAPPLVRARGGGSVRRAREPRGQGARPGKLQEA
ARVPPRCRVAAGRCRRCRSVRRQRRRQHPM*
back to top

mRNA from alignment at S-ischiensis_contig9:3497529..3498186+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20815.1 ID=mRNA_S-ischiensis_contig9.20815.1|Name=mRNA_S-ischiensis_contig9.20815.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=658bp|location=Sequence derived from alignment at S-ischiensis_contig9:3497529..3498186+ (Schizocladia ischiensis KU_0333)
CCCAGCAACGCCTTCCAAGTTCGACCGCCACGCCGAGCCCGCAGAGGGCT
GGGGGGGGAAGGACCTCCTGCCCCCGCCACCGCCACCGCCGCCGCCGCGG
TCCCTGTCAAGCAGCCCCAGCAGAGGCAGAGCCGCCGCCCCCATCCCGCC
CGCTGGCCGGCTCGGTATCGTCCTCGACCTCATCAAGCCCCTGCTGCCGC
CGCCGCCACCGCTCCCATCAAAGCCCTTGAGCCCTCCCTGGCCTACCGGC
GCCGGCGCCGGGCCTGGGTTAACCCCCGGGCCCGGGGCCGCACCCAAAGC
CTCGGGCAGCTGCCAGTGACTGTTCTGCACGGGCCCGGGTTCCAGCAGCG
GCTCGCCCCCCCCCTCGTCCGGGCCCGGGGCGGCGGCAGCGTCCGCCGGG
CCCGGGAGCCTCGGGGGCAAGGTGCTCGACCGGGAAAACTGCAGGAGGCC
GCCCGAGTGCCGCCTCGCTGCCGGGTGGCCGCTGGGAGATGCCGCCGCTG
CCGGTCCGTCCGGCGGCAGCGGCGGCGGCAGCACCCCATGTGATGCCTCA
GGACTTGCTCGGCGTCTTCTTGCATCCGGGGGGGCTTGGTGAGCATGGTG
CCGCGGGGGGTCCGGCGAGTCTGCTGGCAGGGCCGGACCCGGGCCAGGGC
AGGGGCCA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:3497529..3498186+

>mRNA_S-ischiensis_contig9.20815.1 ID=mRNA_S-ischiensis_contig9.20815.1|Name=mRNA_S-ischiensis_contig9.20815.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1086bp|location=Sequence derived from alignment at S-ischiensis_contig9:3497529..3498186+ (Schizocladia ischiensis KU_0333)
CCCAGCAACGCCTTCCAAGTTCGACCGCCACGCCGAGCCCGCAGAGGGCT
GGGGGGGGAAGGACCTCCTGCCCCCGCCACCGCCACCGCCGCCGCCGCGG
TCCCTGTCAAGCAGCCCCAGCAGAGGCAGAGCCGCCGCCCCCATCCCGCC
CGCTGGCCGGCTCGGTATCGTCCTCGACCTCATCAAGCCCCTGCTGCCGC
CGCCGCCACCGCTCCCATCAAAGCCCTTGAGCCCTCCCTGGCCTACCGGC
GCCGGCGCCGGGCCTGGGTTAACCCCCGGGCCCGGGGCCGCACCCAAAGC
CTCGGGCAGCTGCCAGTGACTGTTCTGCACGGGCCCGGGTTCCAGCAGCG
GCTCGCCCCCCCCCTCGTCCGGGCCCGGGGCGGCGGCAGCGTCCGCCGGG
CCCGGGAGCCTCGGGGGCAAGGTGCTCGACCGGGAAAACTGCAGGAGGCC
GCCCGAGTGCCGCCTCGCTGCCGGGTGGCCGCTGGGAGATGCCGCCGCTG
CCGGTCCGTCCGGCGGCAGCGGCGGCGGCAGCACCCCATGTGACCCAGCA
ACGCCTTCCAAGTTCGACCGCCACGCCGAGCCCGCAGAGGGCTGGGGGGG
GAAGGACCTCCTGCCCCCGCCACCGCCACCGCCGCCGCCGCGGTCCCTGT
CAAGCAGCCCCAGCAGAGGCAGAGCCGCCGCCCCCATCCCGCCCGCTGGC
CGGCTCGGTATCGTCCTCGACCTCATCAAGCCCCTGCTGCCGCCGCCGCC
ACCGCTCCCATCAAAGCCCTTGAGCCCTCCCTGGCCTACCGGCGCCGGCG
CCGGGCCTGGGTTAACCCCCGGGCCCGGGGCCGCACCCAAAGCCTCGGGC
AGCTGCCAGTGACTGTTCTGCACGGGCCCGGGTTCCAGCAGCGGCTCGCC
CCCCCCCTCGTCCGGGCCCGGGGCGGCGGCAGCGTCCGCCGGGCCCGGGA
GCCTCGGGGGCAAGGTGCTCGACCGGGAAAACTGCAGGAGGCCGCCCGAG
TGCCGCCTCGCTGCCGGGTGGCCGCTGGGAGATGCCGCCGCTGCCGGTCC
GTCCGGCGGCAGCGGCGGCGGCAGCACCCCATGTGA
back to top