|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 1116 |
| Cds size | 609 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817369.9300897-UTR-S-ischiensis_contig9:3480643..3481150 | 1622817369.9300897-UTR-S-ischiensis_contig9:3480643..3481150 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 3480644..3481150 + |
| 1695741062.5584166-UTR-S-ischiensis_contig9:3480643..3481150 | 1695741062.5584166-UTR-S-ischiensis_contig9:3480643..3481150 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 3480644..3481150 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817369.9424303-CDS-S-ischiensis_contig9:3481150..3481699 | 1622817369.9424303-CDS-S-ischiensis_contig9:3481150..3481699 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 3481151..3481699 + |
| 1695741062.5705948-CDS-S-ischiensis_contig9:3481150..3481699 | 1695741062.5705948-CDS-S-ischiensis_contig9:3481150..3481699 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 3481151..3481699 + |
| 1622817369.9535468-CDS-S-ischiensis_contig9:3481996..3482056 | 1622817369.9535468-CDS-S-ischiensis_contig9:3481996..3482056 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 3481997..3482056 + |
| 1695741062.5837348-CDS-S-ischiensis_contig9:3481996..3482056 | 1695741062.5837348-CDS-S-ischiensis_contig9:3481996..3482056 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 3481997..3482056 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20811.1 >prot_S-ischiensis_contig9.20811.1 ID=prot_S-ischiensis_contig9.20811.1|Name=mRNA_S-ischiensis_contig9.20811.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=203bp
MHCTILHTYSTIQVQYSRTLPRALTVHMHCTVLHTYSTVQVQYSRTLPKV
QYILHSRHTVHALHRTAYILYTKYKYSRTLPEAHTVLSQGLVYTHFPLLG
STLYVRSTGLVGTLLSQDLIEEPEQSPSHAARAIHLLYIRYGSLLQVSYI
AWHSLEYDTHMHTTTSTALVSTLLLCTYTIHAAAGGNTESRACGTSGLNS
TYS back to topmRNA from alignment at S-ischiensis_contig9:3480644..3482056+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig9.20811.1 ID=mRNA_S-ischiensis_contig9.20811.1|Name=mRNA_S-ischiensis_contig9.20811.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1413bp|location=Sequence derived from alignment at S-ischiensis_contig9:3480644..3482056+ (Schizocladia ischiensis KU_0333)
GATCATTGCGTGCTACTGCATGAGTACTCGAGTACGAGTACAGCAGGATA
TATATATATATAGGAGGCTAGGTTAGCGCAAACGAAGCTCACAAGGAAGC
TGGTTAGCGCAAACAAAGCTCAAAAATAAAATAAACATAAACAGCAGGCG
TGGTGACGACACGCTGTGTTTGCTACATGCTGCTCTGGGCATACCTTGCT
CTGGAAGCACAAGGACAGCCTCACCGCCAATGACTACAGCAAACCTGCAA
CACACACAGCACGGTCGCACCTGCGCCTGCTCGTCTGGGCAGTGCAAACC
GCGACGAGCCCCTCCCGTCAAGGCCAAGTACTCTACAAGGCGTGCACGGG
TCTGCTGGGTGGCAATGACTACGCCCCGCGCACGAGTACTGGAGCACATG
CAGTACATGCACTACACCGTACCGTTGCATACCTCCTTCCGGAAATACTC
TACAGTATAGTACGAGTACAGTACAGTAGAACCCTTTCTAAGGCACATAC
TGTACAAATGCACTGCACCATACTGCATACCTACTCTACAATACAAGTAC
AGTACAGTAGAACCCTTCCTAGGGCACTTACTGTACACATGCACTGCACC
GTACTGCATACCTACTCTACAGTACAAGTACAGTACAGTAGAACCCTTCC
TAAGGTACAGTACATACTGCACTCCAGACATACAGTACATGCACTACACC
GTACTGCATACATACTCTACACTAAGTACAAGTACAGTAGAACCCTTCCC
GAGGCACATACTGTACTCAGCCAGGGGCTCGTATACACACACTTTCCACT
ACTTGGGAGCACATTGTATGTACGCAGTACTGGACTGGTAGGTACTCTAC
TATCCCAAGACCTTATAGAAGAACCCGAGCAGAGCCCTTCCCACGCCGCC
AGAGCAATCCATCTACTGTACATAAGATACGGTAGCCTCTTGCAAGTATC
GTACATTGCATGGCATTCCCTAGAGTACGATACACACATGCACACTACCA
CAAGCACAGCACTCGTATCTACTCTACTACTTTGTACATACACGATTCAC
GCCGCGGCGGCGGCGGCGGGGATCACAATCATAGCCATGACCCCCGGCCT
AAGATGGACATACTTGGGCGCGATCCGCTCACCCCCTCTCAACCGCGCCA
GTGCCGCCCCCGGCCCGGACGCCACCCTCAACCGGAAACCCTCCTCCAAC
TCCCCCCTCCCCGGCAACTCCGCGTACCACACCTGCTTCACGTCCTGGAC
TTGCCGCATCTCCAGGGGCAACGCCTCCCCGCCCCCCTCCAACTCCCCCT
CCCCCCCGGCCCCCACTCCCCCTCCTCTTCCTCCCCGCTCCGCCGCCGCC
GCTGCGGGTGGCAACACAGAGAGCAGGGCCTGCGGGACCTCAGGGTTGAA
CTCCACATATTCT back to topCoding sequence (CDS) from alignment at S-ischiensis_contig9:3480644..3482056+ >mRNA_S-ischiensis_contig9.20811.1 ID=mRNA_S-ischiensis_contig9.20811.1|Name=mRNA_S-ischiensis_contig9.20811.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1218bp|location=Sequence derived from alignment at S-ischiensis_contig9:3480644..3482056+ (Schizocladia ischiensis KU_0333)
ATGCACTGCACCATACTGCATACCTACTCTACAATACAAGTACAGTACAG
TAGAACCCTTCCTAGGGCACTTACTGTACACATGCACTGCACCGTACTGC
ATACCTACTCTACAGTACAAGTACAGTACAGTAGAACCCTTCCTAAGGTA
CAGTACATACTGCACTCCAGACATACAGTACATGCACTACACCGTACTGC
ATACATACTCTACACTAAGTACAAGTACAGTAGAACCCTTCCCGAGGCAC
ATACTGTACTCAGCCAGGGGCTCGTATACACACACTTTCCACTACTTGGG
AGCACATTGTATGTACGCAGTACTGGACTGGTAGGTACTCTACTATCCCA
AGACCTTATAGAAGAACCCGAGCAGAGCCCTTCCCACGCCGCCAGAGCAA
TCCATCTACTGTACATAAGATACGGTAGCCTCTTGCAAGTATCGTACATT
GCATGGCATTCCCTAGAGTACGATACACACATGCACACTACCACAAGCAC
AGCACTCGTATCTACTCTACTACTTTGTACATACACGATTCACGCCGCGA
TGCACTGCACCATACTGCATACCTACTCTACAATACAAGTACAGTACAGT
AGAACCCTTCCTAGGGCACTTACTGTACACATGCACTGCACCGTACTGCA
TACCTACTCTACAGTACAAGTACAGTACAGTAGAACCCTTCCTAAGGTAC
AGTACATACTGCACTCCAGACATACAGTACATGCACTACACCGTACTGCA
TACATACTCTACACTAAGTACAAGTACAGTAGAACCCTTCCCGAGGCACA
TACTGTACTCAGCCAGGGGCTCGTATACACACACTTTCCACTACTTGGGA
GCACATTGTATGTACGCAGTACTGGACTGGTAGGTACTCTACTATCCCAA
GACCTTATAGAAGAACCCGAGCAGAGCCCTTCCCACGCCGCCAGAGCAAT
CCATCTACTGTACATAAGATACGGTAGCCTCTTGCAAGTATCGTACATTG
CATGGCATTCCCTAGAGTACGATACACACATGCACACTACCACAAGCACA
GCACTCGTATCTACTCTACTACTTTGTACATACACGATTCACGCCGCGGC
GGGTGGCAACACAGAGAGCAGGGCCTGCGGGACCTCAGGGTTGAACTCCA
CATATTCTGCGGGTGGCAACACAGAGAGCAGGGCCTGCGGGACCTCAGGG
TTGAACTCCACATATTCT back to top
|