mRNA_S-ischiensis_contig9.20808.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20808.1
Unique NamemRNA_S-ischiensis_contig9.20808.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3423717..3424722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size181
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817369.8281531-CDS-S-ischiensis_contig9:3423717..34238731622817369.8281531-CDS-S-ischiensis_contig9:3423717..3423873Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3423718..3423873 -
1695741062.5144374-CDS-S-ischiensis_contig9:3423717..34238731695741062.5144374-CDS-S-ischiensis_contig9:3423717..3423873Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3423718..3423873 -
1622817369.8428464-CDS-S-ischiensis_contig9:3424698..34247221622817369.8428464-CDS-S-ischiensis_contig9:3424698..3424722Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3424699..3424722 -
1695741062.5252671-CDS-S-ischiensis_contig9:3424698..34247221695741062.5252671-CDS-S-ischiensis_contig9:3424698..3424722Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3424699..3424722 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20808.1prot_S-ischiensis_contig9.20808.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3423718..3424722 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20808.1

>prot_S-ischiensis_contig9.20808.1 ID=prot_S-ischiensis_contig9.20808.1|Name=mRNA_S-ischiensis_contig9.20808.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=60bp
KWANVSAELGASVVSQRGGIRLAAEGGDASLVLGKAFQGAAGGNNEEGLS
GGPEGGLPPD
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mRNA from alignment at S-ischiensis_contig9:3423717..3424722-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20808.1 ID=mRNA_S-ischiensis_contig9.20808.1|Name=mRNA_S-ischiensis_contig9.20808.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1006bp|location=Sequence derived from alignment at S-ischiensis_contig9:3423717..3424722- (Schizocladia ischiensis KU_0333)
AAATGGGCGAACGTCAGCGCGGAGGTGGGTCAGCGGCACCGGGCAGGGTT
GGCACTTAGAGGTTAATTAGGGCTTGACTAACCTTCATTTTAGGTCTAAT
TACCGCTGACTACCAAGAGTATAATTATGGGCCCAAAAGGGCACCACCTC
GGGGTGAAGTGCCAACCCTGCGGTCAGCAGCCCGTGGCTTGAAAGATACG
GTGGACTGCGCTTGCTATAGTGGTACGAGTACTCAAGCATGTAGGTAACG
CTGGAGCTGGTTCGGTCGATGATGAGTGCACATTCCTGCCGTGGGTGGTG
AGGTTTTTTACCGATGAATGACGTGGTTGTTGTCGGAGACACATTGCCCG
CCAGAAAACATTTTCGACGGATTTTGTCTTGCCAACTGTGTACTACACAC
CGTGGGCAAGTCAACATACGAGTACCCACCCCCCCCGCACACGCCCTCCC
GCTTCGAACCCTTCGATTGGGCCAGGGTTGGCACTTAACCCCTACTGTAA
GTGGTGCCCTTTTATGCCCTTAATTAGAGGTAGTTAGTGGTACTAGACCT
AAATGAAGGCTAACTAGGCCCTAGTTAACCTCTAAGTGCCAACCCTGACT
GTGACTGCGCACTTAGCCCCTCAGCGGCGCCCTGTTAGGCCCTTGATTAG
ACGTAATTAGACCTAAGATGAAGGCTAATTAGGCCCTAATTAACCTCTGA
GTGCCAACCCTGCTCGGATTGGCAGCTGGGCACCAGCGTGTTAGCCCAGC
GAGGAGGCATCTGCATGAGGTAATTAGGGAAAAATTAGACCTAAGATGAA
GCAAATTAGGCCCTAATTAACATCTAAGTGCCAACCCTGCAATTGGCAGC
TGGGCGCCAGCGTGGTCTCCCAGCGAGGAGGCATCCGCCTGGCGGCGGAA
GGCGGCGACGCCTCCCTGGTCCTGGGAAAAGCCTTCCAAGGCGCAGCGGG
AGGGAATAATGAGGAGGGCTTGAGCGGCGGGCCCGAGGGAGGATTGCCAC
CCGACG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3423717..3424722-

>mRNA_S-ischiensis_contig9.20808.1 ID=mRNA_S-ischiensis_contig9.20808.1|Name=mRNA_S-ischiensis_contig9.20808.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=360bp|location=Sequence derived from alignment at S-ischiensis_contig9:3423717..3424722- (Schizocladia ischiensis KU_0333)
AAATGGGCGAACGTCAGCGCGGAGAAATGGGCGAACGTCAGCGCGGAGCT
GGGCGCCAGCGTGGTCTCCCAGCGAGGAGGCATCCGCCTGGCGGCGGAAG
GCGGCGACGCCTCCCTGGTCCTGGGAAAAGCCTTCCAAGGCGCAGCGGGA
GGGAATAATGAGGAGGGCTTGAGCGGCGGGCCCGAGGGAGGATTGCCACC
CGACCTGGGCGCCAGCGTGGTCTCCCAGCGAGGAGGCATCCGCCTGGCGG
CGGAAGGCGGCGACGCCTCCCTGGTCCTGGGAAAAGCCTTCCAAGGCGCA
GCGGGAGGGAATAATGAGGAGGGCTTGAGCGGCGGGCCCGAGGGAGGATT
GCCACCCGAC
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