mRNA_S-ischiensis_contig9.20807.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20807.1
Unique NamemRNA_S-ischiensis_contig9.20807.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3420446..3421235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817369.779997-CDS-S-ischiensis_contig9:3420445..34205461622817369.779997-CDS-S-ischiensis_contig9:3420445..3420546Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3420446..3420546 -
1695741062.4898496-CDS-S-ischiensis_contig9:3420445..34205461695741062.4898496-CDS-S-ischiensis_contig9:3420445..3420546Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3420446..3420546 -
1622817369.7920446-CDS-S-ischiensis_contig9:3420991..34212351622817369.7920446-CDS-S-ischiensis_contig9:3420991..3421235Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3420992..3421235 -
1695741062.5008793-CDS-S-ischiensis_contig9:3420991..34212351695741062.5008793-CDS-S-ischiensis_contig9:3420991..3421235Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3420992..3421235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20807.1prot_S-ischiensis_contig9.20807.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3420446..3421235 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20807.1

>prot_S-ischiensis_contig9.20807.1 ID=prot_S-ischiensis_contig9.20807.1|Name=mRNA_S-ischiensis_contig9.20807.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=115bp
AAAEGVREGTRTPGDGKGNEKGRTSSSRGETVSESPGAGPALDGGTWLTL
DGGGVTGKFRRFDARADDEVLFGTGLFSLLPGQPEHAPAAPPAAAMRLKG
PDASLTSANSTHISS
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mRNA from alignment at S-ischiensis_contig9:3420446..3421235-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20807.1 ID=mRNA_S-ischiensis_contig9.20807.1|Name=mRNA_S-ischiensis_contig9.20807.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=790bp|location=Sequence derived from alignment at S-ischiensis_contig9:3420446..3421235- (Schizocladia ischiensis KU_0333)
GCGGCGGCGGAGGGGGTGCGGGAGGGGACCCGCACCCCAGGGGATGGGAA
GGGAAACGAAAAAGGGCGGACGTCCTCCTCTCGGGGTGAAACTGTTTCTG
AGTCTCCTGGGGCCGGGCCCGCCTTGGATGGCGGGACTTGGCTCACCTTG
GATGGCGGGGGCGTGACGGGAAAGTTCCGGAGGTTCGACGCCCGCGCGGA
CGACGAGGTCCTTTTCGGGACTGGTCTCTTCTCCCTCCTGCCAGGTAGGT
AACTTGGAAGTATGTATACATATATGTACTCACGTTGTGCTTGCCGTAGT
CCCTAGACCATTGACCACGATCCTTGGTCAAGACGGAGCAGGAAGTACAA
GTGAAAACTTGTACTTGAAGTGTCCGAGTGCGCAGCGGTCCTCTCTCTCT
CCTCTCGTGTAGTCTGACATCGCGTCACGTCACGATCTCTCCGATAAATG
ACGTGTGTGATGTGATGCAATGTGATGTGATGTGATATGTGCCCTCATGT
ACTTCAAAGCATGTAGTGCAGCTTGACATCACATCACATCACACCACGGT
AGTGTCCCGTCGCATCACATCACGGCAATGTCCCGTCCCCCTTAAAGGGT
CTCAAAGCGTCAGCCGTTCCCGCGACTGCACCCGAGCCCCGCGAGACAAC
AACAAACCAGGTTCGCTCAATCCCCCCGGCGATCGCCAGGGCAACCGGAA
CACGCGCCCGCGGCCCCCCCGGCCGCCGCCATGCGCCTAAAAGGTCCGGA
CGCCTCACTGACCTCCGCCAACTCCACCCACATATCCTCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3420446..3421235-

>mRNA_S-ischiensis_contig9.20807.1 ID=mRNA_S-ischiensis_contig9.20807.1|Name=mRNA_S-ischiensis_contig9.20807.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=690bp|location=Sequence derived from alignment at S-ischiensis_contig9:3420446..3421235- (Schizocladia ischiensis KU_0333)
GCGGCGGCGGAGGGGGTGCGGGAGGGGACCCGCACCCCAGGGGATGGGAA
GGGAAACGAAAAAGGGCGGACGTCCTCCTCTCGGGGTGAAACTGTTTCTG
AGTCTCCTGGGGCCGGGCCCGCCTTGGATGGCGGGACTTGGCTCACCTTG
GATGGCGGGGGCGTGACGGGAAAGTTCCGGAGGTTCGACGCCCGCGCGGA
CGACGAGGTCCTTTTCGGGACTGGTCTCTTCTCCCTCCTGCCAGGCGGCG
GCGGAGGGGGTGCGGGAGGGGACCCGCACCCCAGGGGATGGGAAGGGAAA
CGAAAAAGGGCGGACGTCCTCCTCTCGGGGTGAAACTGTTTCTGAGTCTC
CTGGGGCCGGGCCCGCCTTGGATGGCGGGACTTGGCTCACCTTGGATGGC
GGGGGCGTGACGGGAAAGTTCCGGAGGTTCGACGCCCGCGCGGACGACGA
GGTCCTTTTCGGGACTGGTCTCTTCTCCCTCCTGCCAGGGCAACCGGAAC
ACGCGCCCGCGGCCCCCCCGGCCGCCGCCATGCGCCTAAAAGGTCCGGAC
GCCTCACTGACCTCCGCCAACTCCACCCACATATCCTCCGGCAACCGGAA
CACGCGCCCGCGGCCCCCCCGGCCGCCGCCATGCGCCTAAAAGGTCCGGA
CGCCTCACTGACCTCCGCCAACTCCACCCACATATCCTCC
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