mRNA_S-ischiensis_contig9.20801.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20801.1
Unique NamemRNA_S-ischiensis_contig9.20801.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20801.1 vs. uniprot
Match: A0A6H5JKJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKJ9_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 9.270e-9
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:  301 VPVLEALNRNARKPKKANHGKRPCSHVRRRAKRARKVTAR*TP 429
            VP +EA+NRNAR+PKKANHGKRPCSHV RR +R RK   R  P
Sbjct:   78 VPAMEAVNRNARRPKKANHGKRPCSHVGRRRRRRRKNIIRNGP 120
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BLAST of mRNA_S-ischiensis_contig9.20801.1 vs. uniprot
Match: A0A2R5GTF7_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GTF7_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 5.400e-8
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:  301 VPVLEALNRNARKPKKANHGKRPCSHVRRRAKRARKV 411
            +  L+ LNRNARKPKKANHGKRPCSHVRRR KR RKV
Sbjct:   71 IETLQMLNRNARKPKKANHGKRPCSHVRRREKR-RKV 106
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BLAST of mRNA_S-ischiensis_contig9.20801.1 vs. uniprot
Match: A0A484EF41_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EF41_BRELC)

HSP 1 Score: 57.4 bits (137), Expect = 9.220e-8
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:  259 GVPAQLPFPAPALGVPVLEALNRNARKPKKANHGKRPCSHVRRRAKR 399
            G P+ + + A      V+E LNRNAR+PKKANHGKRPCSH RRR KR
Sbjct:   37 GAPSHIDWLAAETTPTVMELLNRNARRPKKANHGKRPCSHFRRRQKR 83
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BLAST of mRNA_S-ischiensis_contig9.20801.1 vs. uniprot
Match: A0A3F2RXH5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RXH5_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.440e-7
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:  310 LEALNRNARKPKKANHGKRPCSHVRRRAKRARKVTA 417
            +E LNRNAR+PKKANHGKRPCSH RRR KR  K +A
Sbjct:   53 MELLNRNARRPKKANHGKRPCSHHRRRQKRLGKKSA 88
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BLAST of mRNA_S-ischiensis_contig9.20801.1 vs. uniprot
Match: A0A3R7Z114_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7Z114_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.780e-7
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:  298 GVPV-LEALNRNARKPKKANHGKRPCSHVRRRAKR 399
            G P+ +E LNRNAR+PKKANHGKRPCSH RRR KR
Sbjct:   38 GTPIAMELLNRNARRPKKANHGKRPCSHHRRRQKR 72
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BLAST of mRNA_S-ischiensis_contig9.20801.1 vs. uniprot
Match: W2R7R8_PHYPN (Uncharacterized protein n=14 Tax=Phytophthora parasitica TaxID=4792 RepID=W2R7R8_PHYPN)

HSP 1 Score: 55.1 bits (131), Expect = 9.970e-7
Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:  298 GVPVLEALNRNARKPKKANHGKRPCSHVRRRAKR 399
            G   L+ LNRNAR+PKKANHGKRPCSH RRR KR
Sbjct:   65 GPVALQLLNRNARRPKKANHGKRPCSHYRRRLKR 98
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BLAST of mRNA_S-ischiensis_contig9.20801.1 vs. uniprot
Match: A0A225WHG2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WHG2_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.170e-6
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:  310 LEALNRNARKPKKANHGKRPCSHVRRRAKR 399
            +E LNRNAR+PKKANHGKRPCSH RRR KR
Sbjct:   48 MELLNRNARRPKKANHGKRPCSHHRRRQKR 77
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BLAST of mRNA_S-ischiensis_contig9.20801.1 vs. uniprot
Match: A0A0P1AMW0_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AMW0_PLAHL)

HSP 1 Score: 54.3 bits (129), Expect = 1.220e-6
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:  310 LEALNRNARKPKKANHGKRPCSHVRRRAKR 399
            +E LNRNAR+PKKANHGKRPCSH RRR KR
Sbjct:   51 MELLNRNARRPKKANHGKRPCSHHRRRQKR 80
[Close]
BLAST of mRNA_S-ischiensis_contig9.20801.1 vs. uniprot
Match: A0A2P4XSB6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XSB6_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.220e-6
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:  310 LEALNRNARKPKKANHGKRPCSHVRRRAKR 399
            +E LNRNAR+PKKANHGKRPCSH RRR KR
Sbjct:   50 MELLNRNARRPKKANHGKRPCSHHRRRQKR 79
[Close]
BLAST of mRNA_S-ischiensis_contig9.20801.1 vs. uniprot
Match: W2R1K3_PHYPN (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=W2R1K3_PHYPN)

HSP 1 Score: 54.3 bits (129), Expect = 1.340e-6
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:  310 LEALNRNARKPKKANHGKRPCSHVRRRAKR 399
            +E LNRNAR+PKKANHGKRPCSH RRR KR
Sbjct:   54 MELLNRNARRPKKANHGKRPCSHHRRRQKR 83
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKJ9_9PHAE9.270e-969.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2R5GTF7_9STRA5.400e-881.08Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
A0A484EF41_BRELC9.220e-861.70Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A3F2RXH5_9STRA3.440e-775.00Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A3R7Z114_9STRA3.780e-777.14Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
W2R7R8_PHYPN9.970e-776.47Uncharacterized protein n=14 Tax=Phytophthora para... [more]
A0A225WHG2_9STRA1.170e-683.33Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A0P1AMW0_PLAHL1.220e-683.33Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A2P4XSB6_9STRA1.220e-683.33Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
W2R1K3_PHYPN1.340e-683.33Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3354575..3355868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-09_003250.1
Exons3
Model size559
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20801.1prot_S-ischiensis_contig9.20801.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3354711..3355865 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817403.0689023-UTR-S-ischiensis_contig9:3354574..33547101622817403.0689023-UTR-S-ischiensis_contig9:3354574..3354710Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3354575..3354710 -
1695741088.3264894-UTR-S-ischiensis_contig9:3354574..33547101695741088.3264894-UTR-S-ischiensis_contig9:3354574..3354710Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3354575..3354710 -
1622817403.1139653-UTR-S-ischiensis_contig9:3355865..33558681622817403.1139653-UTR-S-ischiensis_contig9:3355865..3355868Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3355866..3355868 -
1695741088.3770921-UTR-S-ischiensis_contig9:3355865..33558681695741088.3770921-UTR-S-ischiensis_contig9:3355865..3355868Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3355866..3355868 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817403.0820792-CDS-S-ischiensis_contig9:3354710..33547851622817403.0820792-CDS-S-ischiensis_contig9:3354710..3354785Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3354711..3354785 -
1695741088.3397932-CDS-S-ischiensis_contig9:3354710..33547851695741088.3397932-CDS-S-ischiensis_contig9:3354710..3354785Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3354711..3354785 -
1622817403.0930083-CDS-S-ischiensis_contig9:3355390..33555601622817403.0930083-CDS-S-ischiensis_contig9:3355390..3355560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3355391..3355560 -
1695741088.3563304-CDS-S-ischiensis_contig9:3355390..33555601695741088.3563304-CDS-S-ischiensis_contig9:3355390..3355560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3355391..3355560 -
1622817403.103422-CDS-S-ischiensis_contig9:3355690..33558651622817403.103422-CDS-S-ischiensis_contig9:3355690..3355865Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3355691..3355865 -
1695741088.3672457-CDS-S-ischiensis_contig9:3355690..33558651695741088.3672457-CDS-S-ischiensis_contig9:3355690..3355865Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3355691..3355865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20801.1

>prot_S-ischiensis_contig9.20801.1 ID=prot_S-ischiensis_contig9.20801.1|Name=mRNA_S-ischiensis_contig9.20801.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=140bp
MRSCRSCACGVHTASAPHLSASRGTMAALAVAQGLKRMSGCYAFQRLGSS
ARVNTVSRGFAHAVRPMGLGAGAPPQLPPFMLRPVGVPAQLPFPAPALGV
PVLEALNRNARKPKKANHGKRPCSHVRRRAKRARKVTAR*
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mRNA from alignment at S-ischiensis_contig9:3354575..3355868-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20801.1 ID=mRNA_S-ischiensis_contig9.20801.1|Name=mRNA_S-ischiensis_contig9.20801.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1294bp|location=Sequence derived from alignment at S-ischiensis_contig9:3354575..3355868- (Schizocladia ischiensis KU_0333)
CGTATGCGTAGCTGCCGCAGCTGCGCCTGCGGCGTACATACTGCATCGGC
GCCACACCTCTCGGCCTCCCGGGGGACGATGGCGGCGTTAGCTGTGGCCC
AAGGGCTCAAGCGCATGTCAGGCTGCTATGCGTTTCAACGTTTGGGTTCT
TCTGCGCGTGTCAACACCGTGAGCCGAGGTGCGAGTCGTCCCACGATGGC
AAAAGCCTGAGGAACAGGGGCCGAGACAACTGCACGTTGTCCCCCCGGCG
TCGATAGTACATTCATTTGCGCAACACCCATTAACCCCCCGACGTCCTCC
TGCGGCAGGGTTCGCGCACGCCGTGCGCCCTATGGGGCTAGGAGCAGGAG
CACCACCGCAGCTGCCACCCTTCATGCTGCGCCCCGTGGGTGTCCCAGCG
CAGCTTCCCTTCCCGGCGCCTGCATTGGGTGTTCCTGTGCTGGAGGCTTT
AAACCGCAATGCACGAAAGCCCAAGAAGGTGAGAGAACACTTGAGTCGCC
GGACCACTGTAGCGTCGGAGAACGTACTACGGCATACTCCCCCTCCTCCT
TTTCTCCCCTTCCCCACGCAAACTTCCCCTGGCGAGCTGTAAGGAAGGGC
CACTGTCGAGGTCTTTAGTGACGTGGCCTGCACCTCGCCCTGTGTTGTTC
CTGTTAATACTGCATGCCGAAGTAGCCCTCGGACATGCGATTCCCTTTTG
AAGGGCCGTAGTCATCAATTTTGTGGGTGGGATGTGCTGTGTCATACTCG
CAGACCCCACAGCCACGTTGGCATTGCGGAAAGGACTTGGATTGTTGCGG
TATGTGGCTCTGCCAGGGGAGGGAGGGGTCCTGCTCCGTCTCGACCGAGG
CGAGTGGTCAATGGTCTCAGGACTACGGCAAGCACAACGTGAGTACATAT
ATATCCCCGCCATGTTCAATGATCTCGGGACTACGGCAAGCACAATGTGA
GTACATATAATTAGGGGTAATTAGACCTAAAATGAAGGCCAACTAGGCCC
TACCTAGCCTATTAAGTGCCAGTCCTGGTTCCGAATCTGACCCCGCTGGA
CGACCCGCCCCGATTGTTTCGTTTTTTTGGCAGGCCAACCACGGGAAGCG
GCCATGTTCCCACGTACGCAGGCGCGCAAAACGGGCCCGCAAGGTGACGG
CCAGGTGAACGCCTTCCATGCATTGTCTGCCAAAAGTCTTTTTTGCTGTC
GGCGGCCGCGGCAGCAGCCAGTGATTGTGCCGGGTCGATCTCGGCACAAG
AAAAAGCTGGCCGTGAAGGGGGATCGAACGGGCCAATTTTTGTT
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3354575..3355868-

>mRNA_S-ischiensis_contig9.20801.1 ID=mRNA_S-ischiensis_contig9.20801.1|Name=mRNA_S-ischiensis_contig9.20801.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=840bp|location=Sequence derived from alignment at S-ischiensis_contig9:3354575..3355868- (Schizocladia ischiensis KU_0333)
ATGCGTAGCTGCCGCAGCTGCGCCTGCGGCGTACATACTGCATCGGCGCC
ACACCTCTCGGCCTCCCGGGGGACGATGGCGGCGTTAGCTGTGGCCCAAG
GGCTCAAGCGCATGTCAGGCTGCTATGCGTTTCAACGTTTGGGTTCTTCT
GCGCGTGTCAACACCGTGAGCCGAGATGCGTAGCTGCCGCAGCTGCGCCT
GCGGCGTACATACTGCATCGGCGCCACACCTCTCGGCCTCCCGGGGGACG
ATGGCGGCGTTAGCTGTGGCCCAAGGGCTCAAGCGCATGTCAGGCTGCTA
TGCGTTTCAACGTTTGGGTTCTTCTGCGCGTGTCAACACCGTGAGCCGAG
GGTTCGCGCACGCCGTGCGCCCTATGGGGCTAGGAGCAGGAGCACCACCG
CAGCTGCCACCCTTCATGCTGCGCCCCGTGGGTGTCCCAGCGCAGCTTCC
CTTCCCGGCGCCTGCATTGGGTGTTCCTGTGCTGGAGGCTTTAAACCGCA
ATGCACGAAAGCCCAAGAAGGGTTCGCGCACGCCGTGCGCCCTATGGGGC
TAGGAGCAGGAGCACCACCGCAGCTGCCACCCTTCATGCTGCGCCCCGTG
GGTGTCCCAGCGCAGCTTCCCTTCCCGGCGCCTGCATTGGGTGTTCCTGT
GCTGGAGGCTTTAAACCGCAATGCACGAAAGCCCAAGAAGGCCAACCACG
GGAAGCGGCCATGTTCCCACGTACGCAGGCGCGCAAAACGGGCCCGCAAG
GTGACGGCCAGGTGAGCCAACCACGGGAAGCGGCCATGTTCCCACGTACG
CAGGCGCGCAAAACGGGCCCGCAAGGTGACGGCCAGGTGA
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