mRNA_S-ischiensis_contig9.20798.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig9.20798.1 vs. uniprot
Match: A0A0P1B1J6_PLAHL (Mynd finger family protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B1J6_PLAHL) HSP 1 Score: 119 bits (297), Expect = 1.180e-26 Identity = 81/265 (30.57%), Postives = 129/265 (48.68%), Query Frame = 1
Query: 1 TAPGEGDAKIFEAVKADLSIIDGLSLPVTAANAARTLGLDRPLAGRRLNVVAVGASKNYEERLLLESHYWDELGHCLQEREVCLFLTGLEMSGTYAAPEGRVKAPNLEVHCFLGTARKLFSDSNLLERFMVKEDTLVLGSNTGFGNRVGERLRDKKRPLVDPQAMDLVWSWLPDLRFLLGTDLPLVFTCANDWADGAGETLIMRKLLGARFVRRLAENPFSHAVTTTNGPEGLGSASEAGADYYRGNSHWYIVQGCDHEQEVQFR 795
++P + +AV D S++D LS P+T + + L L L V+ +G+S+ E+R+L ++YW+E+ + +V LF G E+ A NL+VH F GT F S L + ++++G NTGFGN VD +L++SWLPDL + +++P +FTCAND+AD GE + +++GA+ + +NPFS A + + RGNS Y+V G D + R
Sbjct: 79 SSPNSNADLVAKAVN-DPSMLDALSFPITLLHVLQQLELS---VDSDLRVLIIGSSRKAEQRVLRITNYWNEISSFFAKAKVTLFFIGPEVDEPDADRINNALPFNLKVHHFKGTFGS-FQKSQLYGE-CAPQASVIVGYNTGFGN------------FVDSHRHELLFSWLPDLYRIAESNIPAIFTCANDYADMNGEFAVQSRIIGAKMLLLPKQNPFSAASH-------FHEQGQQETAWSRGNSFVYVVCGIDETRRCDIR 318
BLAST of mRNA_S-ischiensis_contig9.20798.1 vs. uniprot
Match: A0A024UPK8_9STRA (PIH1_CS domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UPK8_9STRA) HSP 1 Score: 120 bits (300), Expect = 2.130e-26 Identity = 81/252 (32.14%), Postives = 117/252 (46.43%), Query Frame = 1
Query: 16 GDAKIFEAVKADLSIIDGLSLPVTAANAARTLGLDRPLAGRRLNVVAVGASKNYEERLLLESHYWDELGHCLQEREVCLFLTGLEMSGTYAAPEGRVKAPNLEVHCFLGTARKLFSDSNLLERFMVKEDTLVLGSNTGFGNRVGERLRDKKRPLVDPQAMDLVWSWLPDLRFLLGTDLPLVFTCANDWADGAGETLIMRKLLGARFVRRLAENPFSHAVTTTNGPEGLGSASEAGADYYRGNSHWYIVQGCD 771
G I D S +D LS P+T AA+ L L G+ +VV +GA+ E+R+ + YW+E+ E + L+ G E+ LEV TA + + + + +++G NTGFGN ++ DL+WSWLPDL + +++P VFTCAND+AD GE I +L+GA FV ENPFS A L ++ + R NS Y+VQG D
Sbjct: 74 GTHNIVPMAAQDPSFLDALSFPMTFVYAAKALHLMDTGGGQDRHVVVIGATVKAEQRIFDLTKYWNEITAFFPELRMTLWFVGPEVVPHRGFHASSSTTTFLEVRFVQATAGSFLATHSST---LTPHNAVMVGYNTGFGN------------FIESNRFDLLWSWLPDLMAIADSNIPTVFTCANDYADLNGEFAIQSRLVGANFVLLPKENPFSAASH-------LHEENKKDTAWSRANSFLYVVQGGD 303
BLAST of mRNA_S-ischiensis_contig9.20798.1 vs. uniprot
Match: A0A482SI61_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SI61_9ARCH) HSP 1 Score: 118 bits (296), Expect = 1.110e-25 Identity = 98/254 (38.58%), Postives = 130/254 (51.18%), Query Frame = 1
Query: 49 DLSIIDGLSLPVTAA----NAARTLGLD-RPLAGRRLNVVAVGASKNYEERLLLESHYWDELGHCLQE-REVCLFLTGLEMSGTYAAPEGRVKAPNLEVHCFLGTARKLFSDSNLLERFMVKE-------DTLVLGSNTGFGNRVGERLRDKKRPLVDPQAMDLVWSWLPDLRFLLGTDLPLVFTCANDWADGAGETLIMRKLLGARFVRRLAENPFSHAVTTTNGPEGLGSASEAGADYYRGNSHWYIVQGCD 771
DLS++D LS P++ A A L L + +L V+ +G S+ EER+L +++ + EL L R V ++L G E+S T A V + L + F G + FS V+ +++V+G N GFGN + PL P+ DL SWLPDL FL T LPLVF CAND+AD GE IM +LGA F+ AENPFS A T P G E +Y RGNS +Y VQG D
Sbjct: 87 DLSLVDCLSFPLSIACFFHTNAEALSLSFHKHSYDKLTVICIGCSEKAEERVLTQTNAFLELQLALLNVRTVDVWLVGPEVSST--ADNIVVNSRKLNKN-FDGNSTISFSLFRGTVSTFVRAHPECLAGESIVIGYNCGFGNF--------ENPL--PKRYDLFLSWLPDLVFLTSTQLPLVFFCANDYADLVGEVSIMMHILGANFISLPAENPFSFASTMIP-PASNGKRPEE--EYARGNSFFYAVQGSD 324
BLAST of mRNA_S-ischiensis_contig9.20798.1 vs. uniprot
Match: A0A7S1ECZ1_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1ECZ1_HEMAN) HSP 1 Score: 102 bits (255), Expect = 2.090e-21 Identity = 71/227 (31.28%), Postives = 108/227 (47.58%), Query Frame = 1
Query: 133 GRRLNVVAVGASKNYEERLLLESHYWDELGHCLQEREVCLFLTGLEMS----------GTYAA-----PEGRVKAPNLEVHCFLGTARKLFSDSNLLERFMVKEDTLVLGSNTGFGNRVGERLRDKKRPLVDPQAMDLVWSWLPDLRFLLGTDLPLVFTCANDWADGAGETLIMRKLLGARFVRRLAENPFSHAVTTTNGPEGLGSASEAGADYYRGNSHWYIVQGC 768
G LN+V +GA+ EER+L ++ W ELG + L++ G E+S G A P V+ +E CF F ++ E + +TL++ N GFG+ VD DL+WSW DL + + +P +FTCAND+AD GET++ L+G RFV+ NP+ H+ +T G G+G ++ N Y++QGC
Sbjct: 8 GSELNIVCLGATSKCEERVLRDTKCWHELGLMFPCVRIKLWMVGPEVSKRAVLHPKSVGDLARDLGLPPNMEVRTQRIEPPCF-----SAFHARHVDE--LGPHNTLLVTFNGGFGS------------FVDTGNSDLLWSWYDDLCDIADSGIPAMFTCANDYADVTGETIVQSMLVGTRFVQAPTANPY-HSGSTFQGEGGVGDK------WFCANHSVYVIQGC 208
BLAST of mRNA_S-ischiensis_contig9.20798.1 vs. uniprot
Match: A0A7S0Z1P0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z1P0_9CRYP) HSP 1 Score: 96.7 bits (239), Expect = 8.110e-20 Identity = 71/214 (33.18%), Postives = 101/214 (47.20%), Query Frame = 1
Query: 133 GRRLNVVAVGASKNYEERLLLESHYWDELGHCLQEREVCLFLTGLEMSGTYAAPEGRVKAPNLEVHCFLGTARKLFSDSNLLERFMVKE------------------DTLVLGSNTGFGNRVGERLRDKKRPLVDPQAMDLVWSWLPDLRFLLGTDLPLVFTCANDWADGAGETLIMRKLLGARFVRRLAENPFSHAVTTTNGPEGLGSASEAG 720
G LNVV +GA+ EER+L ++ W ELGH ++ L+L G E+S K + AR+L SN+ R E +TL++ N GFG+ VD L+WSW DL + + +P +FTCAND+AD GET++ L+GARFV+ +NP+ H+ +T G EG G A G
Sbjct: 17 GSTLNVVCLGATSKCEERVLRDTKCWHELGHMFPCAKIVLWLVGPEVS----------KRAVMHPKSVADLARELGLPSNMEVRTQRIEPPCFGPFYARHGHELGPHNTLLVTFNGGFGS------------FVDTGDSSLLWSWHGDLCDIADSGVPALFTCANDYADVTGETIVQSLLVGARFVQAPTQNPY-HSGSTFQG-EGGGGARAGG 206
BLAST of mRNA_S-ischiensis_contig9.20798.1 vs. uniprot
Match: A0A3R6Z4T3_9STRA (PIH1_CS domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6Z4T3_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 1.250e-6 Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 1
Query: 409 VLGSNTGFGNRVGERLRDKKRPLVDPQAMDLVWSWLPDLRFLLGTDLPLVFTCANDWA 582
++G NTGFGN ++ DL+WSWLPDL + +++P VFTCAND+A
Sbjct: 1 MVGYNTGFGN------------FIESNRFDLLWSWLPDLMAIADSNIPTVFTCANDYA 46
BLAST of mRNA_S-ischiensis_contig9.20798.1 vs. uniprot
Match: A0A7S3X8V1_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3X8V1_9SPIT) HSP 1 Score: 53.5 bits (127), Expect = 3.000e-5 Identity = 29/64 (45.31%), Postives = 37/64 (57.81%), Query Frame = 1
Query: 499 LVWSWLPDLRFLLGTDLPLVFTCANDWADGAGETLIMRKLLGARFVRRLAENPFSHAVTTTNGP 690
L+ SWLPDL +L +FTCAND++D GETL+ +LLGAR + NPF A P
Sbjct: 8 LMRSWLPDLLAILRGGFIALFTCANDFSDLRGETLVW-ELLGARMLMAPQRNPFKAATIVHEPP 70 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20798.1 >prot_S-ischiensis_contig9.20798.1 ID=prot_S-ischiensis_contig9.20798.1|Name=mRNA_S-ischiensis_contig9.20798.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=376bp TAPGEGDAKIFEAVKADLSIIDGLSLPVTAANAARTLGLDRPLAGRRLNVback to top mRNA from alignment at S-ischiensis_contig9:3330738..3338846- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig9.20798.1 ID=mRNA_S-ischiensis_contig9.20798.1|Name=mRNA_S-ischiensis_contig9.20798.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=8109bp|location=Sequence derived from alignment at S-ischiensis_contig9:3330738..3338846- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig9:3330738..3338846- >mRNA_S-ischiensis_contig9.20798.1 ID=mRNA_S-ischiensis_contig9.20798.1|Name=mRNA_S-ischiensis_contig9.20798.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2256bp|location=Sequence derived from alignment at S-ischiensis_contig9:3330738..3338846- (Schizocladia ischiensis KU_0333)back to top |