mRNA_S-ischiensis_contig9.20791.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20791.1
Unique NamemRNA_S-ischiensis_contig9.20791.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20791.1 vs. uniprot
Match: A0A6H5KPE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPE1_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.750e-21
Identity = 71/197 (36.04%), Postives = 102/197 (51.78%), Query Frame = 1 
Query:  172 ERTTRALNRLVDVVFTAGDLFGQTGGPPR-------HMSASL--ADEDPEKSSSSPTPVE-DGPSLSSLGVGQPGAVALTLPPGEPEPEAPSLWRRIGAKARAARNKQFSVSAEAVTAALVDGPFSILEEYMTLPVSEYSVIDNSVIARTGDDSFRFQVPLRDLIGVDMTPTLDVSVDVDPSAREVTMRTTCSTLYG 732
            +R +RALNR +  +   GD+FG  G           H ++++  AD+D   S      +E +G    +  +   G         E       L +          N+       A  A +VDGPFS L+ YMTLPVSEYS++D+S+I R  D SFRFQ+PL+D +G+D TPT++V V++D  A  V  R+T STLYG
Sbjct:  121 QRVSRALNRALGNILATGDMFGSVGNGVSDGNSFGGHFTSAVGQADKDDGSSDEEEEDIEGEGGHADTEDLPGNGLSPRKFRQEERWCSRLLLGKSXXXXXXXXXNRLLRAKTGASAAVVVDGPFSDLQAYMTLPVSEYSLLDSSIIRRVSDTSFRFQIPLKDFVGLDFTPTMEVEVELDRPAGAVVFRSTRSTLYG 317
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BLAST of mRNA_S-ischiensis_contig9.20791.1 vs. uniprot
Match: A0A836CBD9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBD9_9STRA)

HSP 1 Score: 102 bits (254), Expect = 5.720e-21
Identity = 71/202 (35.15%), Postives = 99/202 (49.01%), Query Frame = 1 
Query:  148 RKSTVAAVERTTRALNRLVDVVFTAGDLFGQTGGPPRHM-SASLADEDPEKSS--SSPTPVEDGPSLSSLGVGQPGAVALTLPPGEPEPEAPSLWRRIGAKARAARNKQFSVSAEAVTAALVDGPFSILEEYMTLPVSEYSVIDNSVIARTGDDSFRFQVPLRDLIGVDMTPTLDVSVDVDPSARE--VTMRTTCSTLYGES 738
            +K  + AV R  R LN +V    T GD+FGQ   PP         D D E ++  SSP+      S SS+ V   G                      G      + K+ +   +   A ++DGPF+ LEEYM  PVS+YS +D+ +I R  D++FR  VPL   +G+D+TPT+DV+VD     RE  + M +  STLYG S
Sbjct:   18 QKGNIKAVSRAVRVLNNIVGSATTLGDMFGQVSSPPVFQHDDDFDDADTETAAALSSPSDALPDASQSSISVNVTGI--------------------NGTSVSVDKLKRVATRGQVGCATVIDGPFTQLEEYMQTPVSQYSTLDDKLITRLDDETFRLAVPLASYVGLDLTPTVDVAVDTSAVQRERLLRMHSLGSTLYGTS 199
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BLAST of mRNA_S-ischiensis_contig9.20791.1 vs. uniprot
Match: D8LLN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN7_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.650e-20
Identity = 49/92 (53.26%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:  457 NKQFSVSAEAVTAALVDGPFSILEEYMTLPVSEYSVIDNSVIARTGDDSFRFQVPLRDLIGVDMTPTLDVSVDVDPSAREVTMRTTCSTLYG 732
            N+    +  A  A +VDGPFS L+ YMTLPVSEYS++D+S+I R  + SFRFQ+PL+D +G+D TPT++V V++D  A  V  R+T STLYG
Sbjct:   81 NRLLRANTGASAAVVVDGPFSDLQAYMTLPVSEYSLLDSSIIRRVSETSFRFQIPLKDFVGLDFTPTMEVEVELDRPAGAVVFRSTRSTLYG 172
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BLAST of mRNA_S-ischiensis_contig9.20791.1 vs. uniprot
Match: I0YRU3_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YRU3_COCSC)

HSP 1 Score: 54.7 bits (130), Expect = 5.740e-5
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:  532 YMTLPVSEYSVIDNSVIART-GDDSFRFQVPLRDLIGVDMTPTLDVSVDVDPSAREVTMR 708
            Y+ LPV EYS++D S I R  G D+F    PLR + GVD+ PT+ VSV  DP +  V+ R
Sbjct:   62 YLALPVEEYSLLDPSWIKREPGSDTFCLSAPLRGITGVDLEPTVWVSVTPDPESGSVSFR 121
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KPE1_9PHAE1.750e-2136.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CBD9_9STRA5.720e-2135.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LLN7_ECTSI1.650e-2053.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
I0YRU3_COCSC5.740e-548.33Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3260082..3263812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size959
Cds size957
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20791.1prot_S-ischiensis_contig9.20791.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3260082..3263810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817369.390777-CDS-S-ischiensis_contig9:3260081..32603371622817369.390777-CDS-S-ischiensis_contig9:3260081..3260337Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3260082..3260337 +
1695741062.2494185-CDS-S-ischiensis_contig9:3260081..32603371695741062.2494185-CDS-S-ischiensis_contig9:3260081..3260337Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3260082..3260337 +
1622817369.4058797-CDS-S-ischiensis_contig9:3260482..32608411622817369.4058797-CDS-S-ischiensis_contig9:3260482..3260841Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3260483..3260841 +
1695741062.2625606-CDS-S-ischiensis_contig9:3260482..32608411695741062.2625606-CDS-S-ischiensis_contig9:3260482..3260841Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3260483..3260841 +
1622817369.4197524-CDS-S-ischiensis_contig9:3263468..32638101622817369.4197524-CDS-S-ischiensis_contig9:3263468..3263810Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3263469..3263810 +
1695741062.2771015-CDS-S-ischiensis_contig9:3263468..32638101695741062.2771015-CDS-S-ischiensis_contig9:3263468..3263810Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3263469..3263810 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20791.1

>prot_S-ischiensis_contig9.20791.1 ID=prot_S-ischiensis_contig9.20791.1|Name=mRNA_S-ischiensis_contig9.20791.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=319bp
GLRAGAAVTRVVMRYTCPARAVGAVLALAAGGAGFSHSGPRLWMGAPASR
KSTVAAVERTTRALNRLVDVVFTAGDLFGQTGGPPRHMSASLADEDPEKS
SSSPTPVEDGPSLSSLGVGQPGAVALTLPPGEPEPEAPSLWRRIGAKARA
ARNKQFSVSAEAVTAALVDGPFSILEEYMTLPVSEYSVIDNSVIARTGDD
SFRFQVPLRDLIGVDMTPTLDVSVDVDPSAREVTMRTTCSTLYGESPSHG
TPLGAWTAALAATTGAGGAGAPAGAAAAAAEHPNRSAANQGVAGGGLDDD
EGRYGGGGGSPGSPHRAEA
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mRNA from alignment at S-ischiensis_contig9:3260082..3263812+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20791.1 ID=mRNA_S-ischiensis_contig9.20791.1|Name=mRNA_S-ischiensis_contig9.20791.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3731bp|location=Sequence derived from alignment at S-ischiensis_contig9:3260082..3263812+ (Schizocladia ischiensis KU_0333)
GGACTACGAGCGGGCGCGGCCGTCACACGGGTAGTGATGCGCTACACATG
CCCTGCGAGGGCCGTTGGGGCTGTCCTGGCGCTTGCTGCCGGGGGAGCTG
GGTTCTCGCACTCAGGGCCTCGCTTGTGGATGGGAGCGCCCGCTTCCCGC
AAGAGCACGGTGGCGGCAGTTGAACGTACCACGAGGGCCCTCAACCGCCT
GGTGGACGTCGTCTTCACGGCGGGAGACCTGTTCGGGCAGACTGGTGGCC
CTCCTAGTGAGTAGGGACCTGTTCCTCTGTGCCGTCGCAAGGATCACAGT
CCGAAGACAGGCGGCGGCTCGATAGAGCCGTCGTCGGACCAATATCATAC
GCCCGGATTGGCATTGACAGAGACTCAACTCCCCTCGACTGCGCATGGCA
GGACACATGTCTGCCTCCCTGGCAGACGAAGACCCGGAAAAGTCCTCCTC
CTCCCCCACCCCGGTCGAGGACGGCCCGTCATTGTCCTCCCTGGGGGTGG
GGCAACCCGGTGCAGTGGCCCTCACCCTGCCACCTGGGGAGCCAGAGCCG
GAGGCCCCGTCCCTGTGGAGGCGGATAGGCGCCAAGGCACGGGCTGCCCG
GAACAAGCAGTTTAGCGTGAGCGCTGAGGCCGTGACGGCAGCTCTCGTCG
ACGGGCCGTTCTCGATCCTCGAGGAGTACATGACCCTTCCCGTATCAGAG
TACAGCGTGATTGACAACAGCGTGATTGCGCGGACGGGGGACGATTCCTT
CCGTTTCCAGGCGAGTGTCCCCAGGGCCCCGTGCATGCTGCGGGCGCAGT
CACAGCCCCCCCCCCCCAGCACGCATCTACTTCGAAGTACACGCCAGAGC
GAATGGTGCGCTCGGAAGTACTCGCAGGTGTACGCCAGGAATGTAGATGG
CACTCCTCCACATTATATAAATGTACTCACGTGGTGCTTGCCGTAGTCCC
GAGACCATTGACCACGCGCCTCGGTCGAGACGGAGCAGATTTGCTCTCTT
AATTGCTTCCCTCCCTGATCCCCTCCCTCCCCTGCTCTTCCTCCTGCTCC
TGCTCCTTATCCTCCTCCTCCTCCTCCGTCCTGCACTGTTTCTCTATGTG
GCCGATGCTATAGTTATTTACGTGCGGAACGGCAACCATGTCGATCCCTA
TATGTGTCTGTGCTGTGGGTGCCGCAGCCTGTGGGCTCTCCCCGATTTCC
CTTGGCATTGCCACCCTACCCGATCCAACCGAATCTGCCCGGGAAATTGA
CGGTCACTGTTGCCAGTTTGGGCCTGGGCGCACGGTTTTTAACATGACGA
CTGGTACTATGCGGTACAGTTTACGAAGTATGTATACGTGTTACCTCGAA
GTATGTACCCATTGGCTCATAGCCTTGCGTGCATTGCCGACAGCCGCAAG
TCGGAACCTCGGGTTCGCCCTGCGACAGGAGTAGCTATGTACTTGTAGTA
TATGCATGTTACTCACGGGACTACTACGGCATGCACAGCATGAGTACACA
CGTATATACTTGTATATATATATGCACTCTACTCACGTTGCGCTTGCCGT
AGTCCCGAGACCATTGACCACGCGCCTCGATCGAGACGGAGCAGTACACG
AGTATGTATATATATACTGAAGTATATGTATACTTCGAAGTACTTTCGAA
GCATACCTGTATACACTCATGCTGTGCTTGCTCTAGTCCCGAGACCATTG
ACCATGTGCCTCGACCCAAGACGGAGCAGGCCCCCTCCCTCCCTCCGTAT
GGCCAGCGTGAAAGGGGCGGGGCGGAGGGGCGGCCATTTCCATATTCCCC
CCATCCAGGACTCGCGAGAGTCAGGTCTGAGGGGGGTGGCACCCCTGCTA
GGCCTAAGTTAGGCCCATCAGGGGAGGGGGGATCCCCGCCGTGCCGTGAC
ATGGCGAGCTGGTTGATGATGCAAATCGCCAATACTTCAAGTATGCTTCT
AACTTAGCCCTTTTACCCCTGGGGTCCGTATAATCATAGGGCCTTAGTGT
GCAAGTCCAATTTAGCAGGGGCAAAAGGGTTAAGTGATTGTTTCCCTGCT
TGGTTGAACAAGCCGGCCGTCTCGTTGGGGGGGAGGGACACATGTATTGT
GCTGGCAGATGTACCGGTATTCCTCATACAGTTGGCATGGACGCGCGGGG
ACACATGCTTGCCCGCCCGAGAAGCATGTCAGACCTCTCAAATGGCTGCA
TTGCCGCCCCCTCCAGGGTCTCTCCTAACTCTTTTGCCCCTGAGGTCCGT
ATAATCATAGGGTTTTAGTGTGTAAGTCCAATTTAGCAGGAGTAAAAGGG
TTAACCTCCCCCAGGCCCCCCTGCAGGACCTCTCGTCAGAACGATGCCAC
CACGCCTCCCACATTCTGCGTCCCTCCCGTCCGGTGATGGATCATCGAGG
CTAACAGTCAGCCTTTTTATCGACAGCCTCCATCCATGCATCGAGAGTTG
ATGCTTCCCTCCCATCCGGTGATGGATCATTGAGGCTAGCCGGCCTGTTT
TTCGACAGCCTCCATCTATCGAGAGTCGATACACTAGTACGAGAACACTC
CATTCTTAAATGGGACAACTACTCATACGAGAACACTCAATCTCACACAT
GTGCGATTTTACCTCGTTACTTCGAAGTACGAAGTACAATTTGTGTGATT
CACCACACACGCAACCGATCCACCCGTGCTGAATCCAAGTGGTTACCTAG
TGCCGCCCGGCGGATGTCGACCGAGCCTCCAGCTATCCAATCGATTAATA
CTCCGGCACGGTTGCTCCCCTGTGGTCAACGGCCATACAGGATGGCTATG
GCAGGCAGCTCATGGGCGCTGCTCCCCAGTGATGGACTATCTAAGGAAAT
CAACCTATTTATCGACGATCCACTGTATACACCGATCGATAGTCGATATT
CGATAGTTTGACCCACACTAGATCCGCGTAGTTAGTAACGCCGTCCGCCA
AATCAGTCCAGCCCAATAACCGTCTACTGATCGATATTCCTTCACTGCTG
CCCCCCTCCCACCACCTTTACGCCTCCCCCCGAATTCCCACCGGGGTCTC
TCCTCCTGATGTCCCCCAGGCCCCCCTGCGAGACCTCATCAGCGTAGACA
TGACCCCCACGCTTGACGTCTTAATTAGAGGCAATATAGGGGTACTTTGA
CCTAAAATGAGGGGTAATTTGACCCTAAATAACCTCTAAATACCAACCCT
GTCTCCTCCTCCCCCCCAGGTCCCCCTGCGAGACCTCATCGGCGTGGACA
TGACCCCCACGCTCGACATAACACTAGCTATAGCCATAACTATCTACTGA
TCGATATTCCATCACTGCTGCTCCCCTCCGGCCAACTTTGTAACTCCCCC
CGAATCTTCCCCCGGGGTCTCTCCTCCTACCCCCCAGGTCCCCCTGCGAG
ACCTCATCGGCGTAGACATGACCCCCACGCTCGACGTCTCAGTGGACGTG
GACCCCTCCGCCCGCGAGGTCACCATGCGCACCACATGCTCCACCCTCTA
CGGCGAGTCCCCTTCCCACGGGACCCCCCTGGGGGCGTGGACAGCCGCCC
TAGCCGCAACAACAGGGGCGGGAGGAGCAGGGGCACCGGCTGGGGCGGCG
GCAGCGGCGGCGGAACACCCCAATAGGTCCGCCGCAAACCAGGGCGTGGC
GGGGGGGGGGCTCGACGACGATGAGGGCCGCTACGGCGGCGGCGGCGGCT
CCCCGGGGTCACCGCATCGTGCAGAGGCGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3260082..3263812+

>mRNA_S-ischiensis_contig9.20791.1 ID=mRNA_S-ischiensis_contig9.20791.1|Name=mRNA_S-ischiensis_contig9.20791.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1914bp|location=Sequence derived from alignment at S-ischiensis_contig9:3260082..3263812+ (Schizocladia ischiensis KU_0333)
GGACTACGAGCGGGCGCGGCCGTCACACGGGTAGTGATGCGCTACACATG
CCCTGCGAGGGCCGTTGGGGCTGTCCTGGCGCTTGCTGCCGGGGGAGCTG
GGTTCTCGCACTCAGGGCCTCGCTTGTGGATGGGAGCGCCCGCTTCCCGC
AAGAGCACGGTGGCGGCAGTTGAACGTACCACGAGGGCCCTCAACCGCCT
GGTGGACGTCGTCTTCACGGCGGGAGACCTGTTCGGGCAGACTGGTGGCC
CTCCTAGGACTACGAGCGGGCGCGGCCGTCACACGGGTAGTGATGCGCTA
CACATGCCCTGCGAGGGCCGTTGGGGCTGTCCTGGCGCTTGCTGCCGGGG
GAGCTGGGTTCTCGCACTCAGGGCCTCGCTTGTGGATGGGAGCGCCCGCT
TCCCGCAAGAGCACGGTGGCGGCAGTTGAACGTACCACGAGGGCCCTCAA
CCGCCTGGTGGACGTCGTCTTCACGGCGGGAGACCTGTTCGGGCAGACTG
GTGGCCCTCCTAGACACATGTCTGCCTCCCTGGCAGACGAAGACCCGGAA
AAGTCCTCCTCCTCCCCCACCCCGGTCGAGGACGGCCCGTCATTGTCCTC
CCTGGGGGTGGGGCAACCCGGTGCAGTGGCCCTCACCCTGCCACCTGGGG
AGCCAGAGCCGGAGGCCCCGTCCCTGTGGAGGCGGATAGGCGCCAAGGCA
CGGGCTGCCCGGAACAAGCAGTTTAGCGTGAGCGCTGAGGCCGTGACGGC
AGCTCTCGTCGACGGGCCGTTCTCGATCCTCGAGGAGTACATGACCCTTC
CCGTATCAGAGTACAGCGTGATTGACAACAGCGTGATTGCGCGGACGGGG
GACGATTCCTTCCGTTTCCAGGACACATGTCTGCCTCCCTGGCAGACGAA
GACCCGGAAAAGTCCTCCTCCTCCCCCACCCCGGTCGAGGACGGCCCGTC
ATTGTCCTCCCTGGGGGTGGGGCAACCCGGTGCAGTGGCCCTCACCCTGC
CACCTGGGGAGCCAGAGCCGGAGGCCCCGTCCCTGTGGAGGCGGATAGGC
GCCAAGGCACGGGCTGCCCGGAACAAGCAGTTTAGCGTGAGCGCTGAGGC
CGTGACGGCAGCTCTCGTCGACGGGCCGTTCTCGATCCTCGAGGAGTACA
TGACCCTTCCCGTATCAGAGTACAGCGTGATTGACAACAGCGTGATTGCG
CGGACGGGGGACGATTCCTTCCGTTTCCAGGTCCCCCTGCGAGACCTCAT
CGGCGTAGACATGACCCCCACGCTCGACGTCTCAGTGGACGTGGACCCCT
CCGCCCGCGAGGTCACCATGCGCACCACATGCTCCACCCTCTACGGCGAG
TCCCCTTCCCACGGGACCCCCCTGGGGGCGTGGACAGCCGCCCTAGCCGC
AACAACAGGGGCGGGAGGAGCAGGGGCACCGGCTGGGGCGGCGGCAGCGG
CGGCGGAACACCCCAATAGGTCCGCCGCAAACCAGGGCGTGGCGGGGGGG
GGGCTCGACGACGATGAGGGCCGCTACGGCGGCGGCGGCGGCTCCCCGGG
GTCACCGCATCGTGCAGAGGCGGTCCCCCTGCGAGACCTCATCGGCGTAG
ACATGACCCCCACGCTCGACGTCTCAGTGGACGTGGACCCCTCCGCCCGC
GAGGTCACCATGCGCACCACATGCTCCACCCTCTACGGCGAGTCCCCTTC
CCACGGGACCCCCCTGGGGGCGTGGACAGCCGCCCTAGCCGCAACAACAG
GGGCGGGAGGAGCAGGGGCACCGGCTGGGGCGGCGGCAGCGGCGGCGGAA
CACCCCAATAGGTCCGCCGCAAACCAGGGCGTGGCGGGGGGGGGGCTCGA
CGACGATGAGGGCCGCTACGGCGGCGGCGGCGGCTCCCCGGGGTCACCGC
ATCGTGCAGAGGCG
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