mRNA_S-ischiensis_contig9.20785.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20785.1
Unique NamemRNA_S-ischiensis_contig9.20785.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20785.1 vs. uniprot
Match: A0A6H5JSL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL4_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 4.220e-14
Identity = 39/63 (61.90%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:    4 GLVLASVGRDFGWEVGMVMRLGQLVCEGSLIEVVDVREQDARLRRALWVLIASTAAPQAVGHL 192
            GLVLAS GR  G+E  +V RLG+LVCEG+LIEVVDV ++D  LRRALW L AS   P+A   L
Sbjct: 1040 GLVLASAGRRLGFEASLVERLGRLVCEGALIEVVDVHKEDTMLRRALWTLTASLCFPKATSCL 1102
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BLAST of mRNA_S-ischiensis_contig9.20785.1 vs. uniprot
Match: D8LN51_ECTSI (Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN51_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 7.750e-14
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:    4 GLVLASVGRDFGWEVGMVMRLGQLVCEGSLIEVVDVREQDARLRRALWVLIASTAAPQAVGHL 192
            GLVLAS GR  G+E  +V RLG+LVCEG LIEVVDV ++D  LRRALW L AS   P+A   L
Sbjct: 1178 GLVLASAGRRLGFEASLVERLGRLVCEGVLIEVVDVHKEDTMLRRALWTLTASLCLPRAAACL 1240
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSL4_9PHAE4.220e-1461.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN51_ECTSI7.750e-1461.90Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3197689..3198687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue5.8e-12
Seed eggNOG ortholog2880.D8LN51
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K06101,ko:K07117,ko:K11423,ko:K11424,ko:K11728
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko05202,map00310,map05202
GOsGO:0000003,GO:0000228,GO:0000803,GO:0000805,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0007530,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009892,GO:0009987,GO:0010452,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016278,GO:0016279,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018193,GO:0018205,GO:0018992,GO:0019222,GO:0019538,GO:0022414,GO:0030849,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0034968,GO:0036211,GO:0040029,GO:0042054,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046975,GO:0048519,GO:0048856,GO:0050789,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0140096,GO:1901564
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1081@2759,KOG1632@1,KOG1632@2759
EC2.1.1.43
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size420
Cds size417
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20785.1prot_S-ischiensis_contig9.20785.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3197690..3198687 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817369.2480054-CDS-S-ischiensis_contig9:3197689..31979041622817369.2480054-CDS-S-ischiensis_contig9:3197689..3197904Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3197690..3197904 -
1695741062.1462395-CDS-S-ischiensis_contig9:3197689..31979041695741062.1462395-CDS-S-ischiensis_contig9:3197689..3197904Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3197690..3197904 -
1622817369.2638588-CDS-S-ischiensis_contig9:3198245..31983271622817369.2638588-CDS-S-ischiensis_contig9:3198245..3198327Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3198246..3198327 -
1695741062.1604009-CDS-S-ischiensis_contig9:3198245..31983271695741062.1604009-CDS-S-ischiensis_contig9:3198245..3198327Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3198246..3198327 -
1622817369.279574-CDS-S-ischiensis_contig9:3198567..31986871622817369.279574-CDS-S-ischiensis_contig9:3198567..3198687Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3198568..3198687 -
1695741062.1737065-CDS-S-ischiensis_contig9:3198567..31986871695741062.1737065-CDS-S-ischiensis_contig9:3198567..3198687Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3198568..3198687 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20785.1

>prot_S-ischiensis_contig9.20785.1 ID=prot_S-ischiensis_contig9.20785.1|Name=mRNA_S-ischiensis_contig9.20785.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=139bp
EGLVLASVGRDFGWEVGMVMRLGQLVCEGSLIEVVDVREQDARLRRALWV
LIASTAAPQAVGHLYQRPSSPPEDPQHEDHHRHRHQHQHKHQPPLPPPQQ
QNAGGQPNHPPQGPGGVHAATFHTQAEKSPRGASAEEPP
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mRNA from alignment at S-ischiensis_contig9:3197689..3198687-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20785.1 ID=mRNA_S-ischiensis_contig9.20785.1|Name=mRNA_S-ischiensis_contig9.20785.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=999bp|location=Sequence derived from alignment at S-ischiensis_contig9:3197689..3198687- (Schizocladia ischiensis KU_0333)
GAGGGGCTGGTGCTGGCTTCGGTGGGCCGCGATTTTGGCTGGGAGGTGGG
GATGGTGATGCGGCTGGGCCAACTGGTGTGCGAGGGCTCCCTGATCGAGG
TGGTGGACGTTCGGGAACAGGCAAGTTTTTTCTCTTCATGGCTGGCCTCT
CGGGGTATTATCTCTCTCTCTGTCATTCTCTCTCTCTCTCCCCCCCCTCT
CTCTCTCTATATCCCCACCCCCCCTGCTCATGCATCCGTCACCCTGCACT
AATGCTTGGCTCCCCCACCCCCTCTCCCCCTGCCTCCCGCCCTACTCCCC
ACATCTCCGCGGCGGCGCTCGTGGGCAATGGCAACGCCACGTCTTGGCCG
GGGACAACAGGATGCGAGGCTGCGGAGGGCGCTGTGGGTGCTGATTGCGT
CGACGGCAGCCCCGCAGGCCGTGGGACACCTCTACCAGCGGCGTGAGTGG
CCGACCCTGTCATTCAATAGTTAATTTAACGAGTGGCTCTAGTTCGTGCC
TGCCTTCCAAAAGCACTCTTTTCGTGCCCCGTCATGAACTCCTCCTCTGC
TGCAGAGGTACTCGTACAGTGAGAGCGAGCTCTGTGTCCCCTCCTTCCTT
AACGACAACTTTGTGATCTGAGATGGGCAAAAGAATCCAAGCCCAAGCCT
ATACCCCCGGCCCTCCCCCCCACACACACACAGCGCCTTCTGTCTTGCGC
GCCCACCCCCCCTGACCCCGGCCCCCATCCCTGCACTCCCGTGAAAAAAA
AATACTCGTTTCGTTTGGCCGTGAACCCTACAGCCTCCTCTCCGCCCGAG
GACCCGCAGCATGAGGACCATCACCGGCACCGCCACCAGCACCAGCACAA
GCACCAGCCGCCGCTGCCGCCACCGCAGCAGCAGAACGCGGGGGGACAAC
CGAACCACCCACCGCAGGGACCGGGGGGTGTCCACGCCGCCACGTTTCAC
ACACAGGCGGAGAAATCACCCAGGGGTGCCTCGGCGGAGGAGCCTCCTC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3197689..3198687-

>mRNA_S-ischiensis_contig9.20785.1 ID=mRNA_S-ischiensis_contig9.20785.1|Name=mRNA_S-ischiensis_contig9.20785.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=834bp|location=Sequence derived from alignment at S-ischiensis_contig9:3197689..3198687- (Schizocladia ischiensis KU_0333)
GAGGGGCTGGTGCTGGCTTCGGTGGGCCGCGATTTTGGCTGGGAGGTGGG
GATGGTGATGCGGCTGGGCCAACTGGTGTGCGAGGGCTCCCTGATCGAGG
TGGTGGACGTTCGGGAACAGGAGGGGCTGGTGCTGGCTTCGGTGGGCCGC
GATTTTGGCTGGGAGGTGGGGATGGTGATGCGGCTGGGCCAACTGGTGTG
CGAGGGCTCCCTGATCGAGGTGGTGGACGTTCGGGAACAGGATGCGAGGC
TGCGGAGGGCGCTGTGGGTGCTGATTGCGTCGACGGCAGCCCCGCAGGCC
GTGGGACACCTCTACCAGCGGCGATGCGAGGCTGCGGAGGGCGCTGTGGG
TGCTGATTGCGTCGACGGCAGCCCCGCAGGCCGTGGGACACCTCTACCAG
CGGCCCTCCTCTCCGCCCGAGGACCCGCAGCATGAGGACCATCACCGGCA
CCGCCACCAGCACCAGCACAAGCACCAGCCGCCGCTGCCGCCACCGCAGC
AGCAGAACGCGGGGGGACAACCGAACCACCCACCGCAGGGACCGGGGGGT
GTCCACGCCGCCACGTTTCACACACAGGCGGAGAAATCACCCAGGGGTGC
CTCGGCGGAGGAGCCTCCTCCTCCTCTCCGCCCGAGGACCCGCAGCATGA
GGACCATCACCGGCACCGCCACCAGCACCAGCACAAGCACCAGCCGCCGC
TGCCGCCACCGCAGCAGCAGAACGCGGGGGGACAACCGAACCACCCACCG
CAGGGACCGGGGGGTGTCCACGCCGCCACGTTTCACACACAGGCGGAGAA
ATCACCCAGGGGTGCCTCGGCGGAGGAGCCTCCT
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