mRNA_S-ischiensis_contig9.20781.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20781.1
Unique NamemRNA_S-ischiensis_contig9.20781.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20781.1 vs. uniprot
Match: A0A6H5JD87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD87_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 1.270e-55
Identity = 93/165 (56.36%), Postives = 117/165 (70.91%), Query Frame = 1 
Query:   16 ELVEALFLLVTEWVRELPGWSLRWLEAWMSVALGSMNVRHREAARAVLGFVQECCRQRADPAFQVAFRALLQEGGLGPPLVQALLTAICGAMPSWMLEDLVQSVRLLFDAFTPAAVIPWVSHTLQQDAFPRSGVSAEAKAAFTQRLKEDFVGRDFRSFKTGLKAF 510
            ELVEALF L+ EWV+ELP  SLRWLEAW+SVA+  + VRHR  ARAVLG +Q CC QR  P F   F ALL+   LG  L + LL+ +CGAMPSWML+DLV +VR LFD+ +PAA    +   L+  +F R  V+ E K AF+++LKEDF  +D+R+FK GLKAF
Sbjct:   75 ELVEALFKLMAEWVKELPVPSLRWLEAWLSVAVSGLAVRHRGPARAVLGLIQACCSQRKSPQFTATFSALLRGTALGVALARGLLSGMCGAMPSWMLDDLVLTVRSLFDSLSPAAASSCIDAVLRDPSFERYSVTNEHKVAFSRKLKEDFCNKDWRAFKAGLKAF 239
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BLAST of mRNA_S-ischiensis_contig9.20781.1 vs. uniprot
Match: D7FSA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA3_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 9.520e-33
Identity = 77/165 (46.67%), Postives = 94/165 (56.97%), Query Frame = 1 
Query:   16 ELVEALFLLVTEWVRELPGWSLRWLEAWMSVALGSMNVRHREAARAVLGFVQECCRQRADPAFQVAFRALLQEGGLGPPLVQALLTAICGAMPSWMLEDLVQSVRLLFDAFTPAAVIPWVSHTLQQDAFPRSGVSAEAKAAFTQRLKEDFVGRDFRSFKTGLKAF 510
            ELVEALF L+ EWV+ELP  SLRWLEAW+SVA+  + VRHR  ARAVLG +Q CC QR  P F   F ALL+   LG  L + LL+ +CGAMPSWML+D V                     T+Q+D   + G+ AEA+  F Q+  E    R     K  L AF
Sbjct:  205 ELVEALFKLMAEWVKELPVPSLRWLEAWLSVAVSGLAVRHRGPARAVLGLIQACCSQRKSPQFTATFSALLRGTALGVALTRGLLSGMCGAMPSWMLDDHVL--------------------TVQRDQRAQGGLLAEAEGRFLQQGLEGVQERTPGIPKPPLGAF 349
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JD87_9PHAE1.270e-5556.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSA3_ECTSI9.520e-3346.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3161261..3163295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size511
Cds size507
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20781.1prot_S-ischiensis_contig9.20781.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3161264..3163295 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817401.4907124-UTR-S-ischiensis_contig9:3161260..31612631622817401.4907124-UTR-S-ischiensis_contig9:3161260..3161263Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3161261..3161263 +
1695741086.9309673-UTR-S-ischiensis_contig9:3161260..31612631695741086.9309673-UTR-S-ischiensis_contig9:3161260..3161263Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3161261..3161263 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817401.502738-CDS-S-ischiensis_contig9:3161263..31613431622817401.502738-CDS-S-ischiensis_contig9:3161263..3161343Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3161264..3161343 +
1695741086.9426205-CDS-S-ischiensis_contig9:3161263..31613431695741086.9426205-CDS-S-ischiensis_contig9:3161263..3161343Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3161264..3161343 +
1622817401.5151525-CDS-S-ischiensis_contig9:3161641..31617651622817401.5151525-CDS-S-ischiensis_contig9:3161641..3161765Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3161642..3161765 +
1695741086.957377-CDS-S-ischiensis_contig9:3161641..31617651695741086.957377-CDS-S-ischiensis_contig9:3161641..3161765Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3161642..3161765 +
1622817401.527244-CDS-S-ischiensis_contig9:3162488..31626881622817401.527244-CDS-S-ischiensis_contig9:3162488..3162688Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3162489..3162688 +
1695741086.9708774-CDS-S-ischiensis_contig9:3162488..31626881695741086.9708774-CDS-S-ischiensis_contig9:3162488..3162688Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3162489..3162688 +
1622817401.5387337-CDS-S-ischiensis_contig9:3163192..31632951622817401.5387337-CDS-S-ischiensis_contig9:3163192..3163295Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3163193..3163295 +
1695741086.982951-CDS-S-ischiensis_contig9:3163192..31632951695741086.982951-CDS-S-ischiensis_contig9:3163192..3163295Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3163193..3163295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20781.1

>prot_S-ischiensis_contig9.20781.1 ID=prot_S-ischiensis_contig9.20781.1|Name=mRNA_S-ischiensis_contig9.20781.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=169bp
MSRVELVEALFLLVTEWVRELPGWSLRWLEAWMSVALGSMNVRHREAARA
VLGFVQECCRQRADPAFQVAFRALLQEGGLGPPLVQALLTAICGAMPSWM
LEDLVQSVRLLFDAFTPAAVIPWVSHTLQQDAFPRSGVSAEAKAAFTQRL
KEDFVGRDFRSFKTGLKAF
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mRNA from alignment at S-ischiensis_contig9:3161261..3163295+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20781.1 ID=mRNA_S-ischiensis_contig9.20781.1|Name=mRNA_S-ischiensis_contig9.20781.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2035bp|location=Sequence derived from alignment at S-ischiensis_contig9:3161261..3163295+ (Schizocladia ischiensis KU_0333)
GAGATGTCGCGTGTGGAGCTGGTGGAAGCGCTCTTCCTGCTGGTGACGGA
GTGGGTTCGGGAGCTCCCTGGGTGGTCCCTCCGGTGAGTTTTTTTCATTT
CTATTCAGATCCATTGACCGCGCGGGGGCTATTCGCCGCCGCCGTCTGCT
GCTTAGTTTGCCATCGTTGGCTTGGACGGGTGGCGGTAATTACCTCCAGG
GTTGGCACTTAACCCCTCCAGTAAGTGGTGCCCTCTTATTCCCTTAATTA
GAGGTAATTGGGGGTAATTAGACCTAAAATGAAGGCTAATTAGACCCTAG
CTAGCCTCCAAGTGCGAACCCTGATCACCTCGGCGGTGCCCGCGTCGATT
CGATTCGACGCCTTGCTCTGCTCTGCTGTAGGTGGCTCGAGGCGTGGATG
TCGGTGGCCCTGGGGTCCATGAATGTGCGCCACCGGGAGGCGGCCCGGGC
AGTGCTGGGGTTTGTGCAGGAGTGCTGTCGCCAGAGGGCCGACCCCGCCT
TCCAGGTACGGGAGAACCTCACTCTGTCTGTCTGTCTGTCTGTCTGTCTT
CCTCTCTGTGTCTGTCTGTGTGTCTGCCTTCCTCTCTGTCTGTCTATCGT
CTGTCTGTCTGTCCTGTCTCTCGCCCTCTCTTCCTCTCTGTCTGTCTGTC
TTCCTCGCTGTCTGCCTGCCTGCCTGCCTGCCTGCCTGTCTGCCTGCCCT
GCCTGTCTGTCTGCCTGTCTGTCTGGCTGCCTGTCTGTCTGTCTGTCTAT
CTTCCTCTCTGTCTGTCTGTCTCTCGCCCTCGCTCGCGTCTCTTCCTCTC
CCTCTCCTCGTCTCTCTGGCGTGTGTCTGTCGTCTCTGTCTGTCTGTCTG
TCTGTCTGCCTGTCTGCCTGCCTGTCTGTCTGCCTGTCTTCGTCTCTGTG
TGTCTGTCTCTCGCCCTCTCTCGCGTCTCTTCCTCTCCCTCTCCTCGTCT
CTTCTCTCTGCTGCTGCTCTCTCTCTCTCTGTTGTTTCCCGCGGTTGGGT
TTGGGCAACTGTGTGCTTCAGTAGTTTGTTCTCGAGTGCTTGCTGTACAG
TGACTCACATGCAAGTGCGTACTGTGTGTGTGTGTGCGTGGCGGAGGGGC
ACTGACCAACCTGCAAATGCACACACACAACACACACACACACCTACACA
CAATTGCGTGCACACACATGCACACACACCCACACACGCACGCACACGCA
CACACACACACACACACACACATGGCAGGTGGCGTTCAGGGCCCTGCTGC
AGGAGGGAGGGCTAGGCCCGCCATTGGTGCAGGCCCTGCTCACGGCCATC
TGTGGGGCCATGCCAAGCTGGATGCTGGAGGATTTGGTGCAGTCCGTGCG
TCTTCTCTTCGATGCTTTCACGCCCGCAGCCGTCATCCCCTGGGTGTCTC
ATACCCTGCAGCAGGACGCCTTCCCGAGGTGCGGAAAACCCCTCGCGAGC
AAGGGCTTGGGAAGTGCTGCGCTGTCCGTCCGTCGGTCCGTCCGTCTGTC
CTGTCCATCTCACAAAGTAGGCATGCGCTGTCATGTGCTAGATAGAGCAC
ACAGTGTACTCCAGTAGCGGTACTAGTACTGTGCTGTACTTCGTAGTACC
TAGTTTGCGTGACAAGTACGGTGGTGCTTTGACTTCTGTCGCCTCACACG
AATGACCATGCTCGCAGCCGTGCTGGTGAACACAGGAACAGTCCCCCTCT
CTCTCTAACCGCCGCACGCACGCGCCCCCGTGCACACACACACACACACA
CACACACACACACACACACACACTTGCACAGATCGGACACATGCGCGCCT
CACACTGGCAAGAACACGCACGCACGCACACGCGCGCGCGCACAACACGC
ACTCACTCACACACACGCACACACACACACAAGCACGCGTGCACACGCAC
AAACACACACGCACATGCGCCGCACGGGGCAGGTCTGGGGTGAGCGCCGA
GGCCAAGGCAGCCTTCACGCAGCGCCTCAAGGAAGACTTTGTGGGGCGAG
ACTTCCGCTCTTTCAAGACGGGCCTCAAGGCCTTC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3161261..3163295+

>mRNA_S-ischiensis_contig9.20781.1 ID=mRNA_S-ischiensis_contig9.20781.1|Name=mRNA_S-ischiensis_contig9.20781.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1014bp|location=Sequence derived from alignment at S-ischiensis_contig9:3161261..3163295+ (Schizocladia ischiensis KU_0333)
ATGTCGCGTGTGGAGCTGGTGGAAGCGCTCTTCCTGCTGGTGACGGAGTG
GGTTCGGGAGCTCCCTGGGTGGTCCCTCCGATGTCGCGTGTGGAGCTGGT
GGAAGCGCTCTTCCTGCTGGTGACGGAGTGGGTTCGGGAGCTCCCTGGGT
GGTCCCTCCGGTGGCTCGAGGCGTGGATGTCGGTGGCCCTGGGGTCCATG
AATGTGCGCCACCGGGAGGCGGCCCGGGCAGTGCTGGGGTTTGTGCAGGA
GTGCTGTCGCCAGAGGGCCGACCCCGCCTTCCAGGTGGCTCGAGGCGTGG
ATGTCGGTGGCCCTGGGGTCCATGAATGTGCGCCACCGGGAGGCGGCCCG
GGCAGTGCTGGGGTTTGTGCAGGAGTGCTGTCGCCAGAGGGCCGACCCCG
CCTTCCAGGTGGCGTTCAGGGCCCTGCTGCAGGAGGGAGGGCTAGGCCCG
CCATTGGTGCAGGCCCTGCTCACGGCCATCTGTGGGGCCATGCCAAGCTG
GATGCTGGAGGATTTGGTGCAGTCCGTGCGTCTTCTCTTCGATGCTTTCA
CGCCCGCAGCCGTCATCCCCTGGGTGTCTCATACCCTGCAGCAGGACGCC
TTCCCGAGGTGGCGTTCAGGGCCCTGCTGCAGGAGGGAGGGCTAGGCCCG
CCATTGGTGCAGGCCCTGCTCACGGCCATCTGTGGGGCCATGCCAAGCTG
GATGCTGGAGGATTTGGTGCAGTCCGTGCGTCTTCTCTTCGATGCTTTCA
CGCCCGCAGCCGTCATCCCCTGGGTGTCTCATACCCTGCAGCAGGACGCC
TTCCCGAGGTCTGGGGTGAGCGCCGAGGCCAAGGCAGCCTTCACGCAGCG
CCTCAAGGAAGACTTTGTGGGGCGAGACTTCCGCTCTTTCAAGACGGGCC
TCAAGGCCTTCGTCTGGGGTGAGCGCCGAGGCCAAGGCAGCCTTCACGCA
GCGCCTCAAGGAAGACTTTGTGGGGCGAGACTTCCGCTCTTTCAAGACGG
GCCTCAAGGCCTTC
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