mRNA_S-ischiensis_contig9.20778.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20778.1
Unique NamemRNA_S-ischiensis_contig9.20778.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20778.1 vs. uniprot
Match: D7FSA2_ECTSI (Xpo1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA2_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 5.780e-24
Identity = 62/109 (56.88%), Postives = 73/109 (66.97%), Query Frame = 2 
Query:   26 VMEALPRLPAGAAALQRAGAVLAGSLAPWLGSRPALLAHAFSQVVGSLQVAEEGRPHS-MRTKGEDHVGAVALMKLVTAAGPTLSAAPGLPRHLLETYLSLSRRLLRHR 349
            ++E LP LP G   LQR+ AVL G LA WL  RP  L  A   V+G L + EEG   + MR KGEDHVGAVAL KLV+AAGP+L+A P LP HLL+ YL LS +L  HR
Sbjct:  728 LVEMLPSLPPGRRELQRSAAVLVGGLAAWLARRPRSLEPALQSVLGVLGLEEEGGGQAFMRDKGEDHVGAVALSKLVSAAGPSLAAVPSLPTHLLQRYLGLSAQLQSHR 836
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BLAST of mRNA_S-ischiensis_contig9.20778.1 vs. uniprot
Match: A0A6H5L1R2_9PHAE (Xpo1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1R2_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 8.120e-20
Identity = 59/110 (53.64%), Postives = 71/110 (64.55%), Query Frame = 2 
Query:   26 VMEALPRLPAGAAALQRAGAVLAGSLAPWLGSRPALLAHAFSQVVGSLQVAEEGRPHS-MRTKGEDHV-GAVALMKLVTAAGPTLSAAPGLPRHLLETYLSLSRRLLRHR 349
            +++ LP LP G   LQR+ AVL G LA WL  RP  L  A   V+G L + EEG   + MR KGEDHV GAVAL KLV+AAGP+L+A   LP HLL+ Y  LS +L  HR
Sbjct:  725 LVDMLPSLPPGRRELQRSAAVLVGGLAAWLARRPRSLEPALQSVLGVLGLEEEGGGQAFMRDKGEDHVVGAVALSKLVSAAGPSLAAVRSLPTHLLQRYHGLSSQLQSHR 834
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSA2_ECTSI5.780e-2456.88Xpo1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L1R2_9PHAE8.120e-2053.64Xpo1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3154112..3157446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue3.1e-21
Seed eggNOG ortholog2880.D7FSA2
EggNOG free text desc.nuclear localization sequence binding
EggNOG OGsKOG2081@1,KOG2081@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size577
Cds size549
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20778.1prot_S-ischiensis_contig9.20778.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3154140..3157446 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817401.422219-UTR-S-ischiensis_contig9:3154111..31541391622817401.422219-UTR-S-ischiensis_contig9:3154111..3154139Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3154112..3154139 +
1695741086.8757434-UTR-S-ischiensis_contig9:3154111..31541391695741086.8757434-UTR-S-ischiensis_contig9:3154111..3154139Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3154112..3154139 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817401.4339006-CDS-S-ischiensis_contig9:3154139..31542651622817401.4339006-CDS-S-ischiensis_contig9:3154139..3154265Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3154140..3154265 +
1695741086.8958132-CDS-S-ischiensis_contig9:3154139..31542651695741086.8958132-CDS-S-ischiensis_contig9:3154139..3154265Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3154140..3154265 +
1622817401.4455318-CDS-S-ischiensis_contig9:3156353..31564221622817401.4455318-CDS-S-ischiensis_contig9:3156353..3156422Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3156354..3156422 +
1695741086.907085-CDS-S-ischiensis_contig9:3156353..31564221695741086.907085-CDS-S-ischiensis_contig9:3156353..3156422Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3156354..3156422 +
1622817401.4580684-CDS-S-ischiensis_contig9:3157092..31574461622817401.4580684-CDS-S-ischiensis_contig9:3157092..3157446Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3157093..3157446 +
1695741086.9190884-CDS-S-ischiensis_contig9:3157092..31574461695741086.9190884-CDS-S-ischiensis_contig9:3157092..3157446Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3157093..3157446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20778.1

>prot_S-ischiensis_contig9.20778.1 ID=prot_S-ischiensis_contig9.20778.1|Name=mRNA_S-ischiensis_contig9.20778.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=183bp
MEALPRLPAGAAALQRAGAVLAGSLAPWLGSRPALLAHAFSQVVGSLQVA
EEGRPHSMRTKGEDHVGAVALMKLVTAAGPTLSAAPGLPRHLLETYLSLS
RRLLRHRYAGTWAADAVETAATAVAGPWQQQQQQQWRPGGGAGGAVPWDD
DGDPSSPPPLHAGSTRLLLACLCKLLGAGLGSG
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mRNA from alignment at S-ischiensis_contig9:3154112..3157446+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20778.1 ID=mRNA_S-ischiensis_contig9.20778.1|Name=mRNA_S-ischiensis_contig9.20778.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3335bp|location=Sequence derived from alignment at S-ischiensis_contig9:3154112..3157446+ (Schizocladia ischiensis KU_0333)
GAACGAGGAGGCGGGTTTGGTGGAGGTGATGGAGGCTTTGCCGCGGCTGC
CAGCGGGGGCGGCGGCGCTGCAGAGGGCCGGGGCGGTGTTGGCGGGGTCG
TTGGCGCCGTGGCTGGGGTCGCGGCCGGCGCTGCTGGCGCACGCCTTCAG
TCAGGTGAGAGGGTGGTGCTGGTGGTGGTGGTGGTGCTGGTGGTGCTGGT
GCTGGTGCTGCCACTGCTTCTTTTTTGTTTTAGTTTTTTGCAAGAAGACA
AACAAGTGAGCGGGAAAGAAGAGGTGTCCCTACTTACGCGAGTTCAGGGC
CCCACCCCCGGAAGCCCTTCCTTTCACCGCCTTTGTTTTAGTTGTTTTTG
TGGCCGCCGTCGTCGTTGCTCTCGCTCTTGCTGTCTGTTTGCCGTGGGCA
TGGCATGGTGTTGTCGCACTCCCGCGTAGCCGGCGGTAAGGGCGAACCCA
GTTTCGACCGACACGAGAGAGACTGTACTTGCTGTGGGTGGCGACGGGCC
ACTCTTTTTTGTTTTCGACCGGTGGTCCTTCATCCTTAGGCGGCGGCAGT
GCCCTACTGTACGCACGGGATTGTGTGTACAGTACTGTAGTGATGTGCGC
TCTGAACGCTGTGGTTTTGACACGACATCACTGTCAGAACAGTGGGGAAG
GAATACTTGCAGCACCCCAGAAGGCCGGACCCTAGGGTCGCCGTACGCGT
CGGTCAGAACAGGGGGGGAAGCTGTTTGACTGACCTGCGCAGGCAACTTA
CTGTATTAATAGGAACAACACCGGGCGAGGTGCAGGCCACGTCACTAAAG
ACCTCAACAGTGGCCCTTCCTTGGCTTGCCAGGGGCGGCTTCCGAGATCG
TCCGGAGTTCGATTTGCGTTCGAAATTCGCACTGGGCGGCCATGCACCCG
TAGTACTACCCCCCCTAAATCGACCACGGGCGACAACTGAGGAGGTTGCA
AATTTCGTGAATCGGTCTCCGTCCTGATTTTCGCTGATCGCTTGGTGTGA
AAATGAGTGAATGAGAACGATTCACGAAATTCGCAAGCGCGCCTCAGGTA
GCCAGTGGTCGATTTAGGGGGGGTAGGGATAAGGTGTTATCAGCGTCCCG
GGTGAATTCCGTACGTAAACGGGACCAGCAATCTGTCGCGTTAAACACTG
AAGTTTAGTGAGCCATACTAAACTCGGTACGACAAGCCCGGCCCGGGCAG
ATGTCCCGCTGCTCTACCGAGAGCTACAGAGCGGTTTGGACGGCAGACAA
ACGCTTTCCAGACAGCTACGGAGCTCGGGAACAACGTGCGCAAGGTTTTA
CCTGCTTAGTTGCCATCCCCATCGGGCAACGAGCCGAAGCTTTTTACTAG
TAAAACCCGACAAACCCGTACCGGAACCCGCCGGGTTCCGGTACGGGTTT
GTCGCCGGGTTCCGGTACGGGTTTATCGGGTTTTACTAGTAAAAAGCTTC
GGCTCGTTGCCCGATGGGGATGGCAACTAAGCAGGTAAAACCTTGCGCAC
GTTGTTCCCGAGCTCCGTAGCTGTCTGGAAAGCGTTTGTCTGCCGTCCAA
ACCGCTCTGTAGCTCTCGGTAGAGCAGCGGGACATCTGCCCGGGCCGGGC
TTGTCGTACCGAGTTTAGTATGGCTCACTAAACTTCAGTGTTTAACGCGA
CAGATTGCTGGTCCCGTTTACATACGGAATTCACCCGGGACGCTGATAAC
ACCTTATCCCTACCTCCCCTAAATCGACCACTGGCTACCTGAGGCGCGCT
TGCGAATTTCGTGAATCGTTCTCATTCACTCATTTTCACACCAAGCGATC
AGCGAAAATCAGGACGGAGACCGATTCACGAAATTTGCAACCTCCTCAGT
TGTCGCCCGTGGTCGAGTTAGGGGGGGTAGTACTACGGGTGCATGGCCGC
GACGAACCCGGCGGGTTCCGGTACGGGTTTATCCCGACAACGGTTGAAAT
GTCTTGATTAATGTAGGCGGCATTTTCGATGTGATGCAGGGGGAATCAGA
CAACAGTTACTAAGTGAATTCTATTCCTCGCCCGAAATCTCCCCCGACAC
AAATTTTCATTGGCTAACCCGTGCTCCGTCGGTCAATACAGAAATCCCTC
CGGACGATCTCAGAAACCGCGCAGGGGAGGGAGGAGAAGGCAACTTACTG
TAGTCAAACGGCGTTCCCCGCGGTTCTGAGCGATCCCATGATATGACATG
CCCCCCCCCCGGATTTGTTTCGGTCATCCGTGGCCTCCCCAGGTGGTGGG
GAGCCTCCAGGTGGCGGAGGAAGGGCGGCCTCACTCCATGCGGACCAAAG
GGGAGGACCACGTGAGTTAACCCTTTTACCCCTGCTACATTGGACTTAGA
CACCAACACCCTATGATTATATGGACCCCGGGGCTAAAAGGGTTAATTGA
CGCCGCGAACAGCTGCAGCTGCTTGCGACAGTCCGTCCATCCGTCACACA
CCGCTCCCCCCCCCCCTGCCCTGTCCATGCTCACTTGCTCTCCTCTCTGG
CCTCGCCTCCCTCGCACACGCACCTTCCTCTCCCCACGCACCTGCCTCTC
CCCCGCCGTACACCCACGCCTTCTTCTCGCTCCTCACGCACATGCCTTCC
CCTCCTCCCTCACATGCACGCCTTCCTGTCCCCCCTCACACGTACTCTGC
GCTTCCCCTCCCCCCCCTGGCACACGCCTTCCCCTCCCTCCACCAATGGA
CGCCTTCTTACCCTCGCCCCTCACACCCACGCCTTCGCCTCCCCTCTCAC
GCACGTCCCCCTCTCCACCCGCACACAGTGATGGAGTATCTAAGCAAATC
AACCTATTTATCGACAGTACTGATCTATACATGTGTATCTATCGATAGTC
GATATTCGATAGTTTGGGACACCAAATCCAAGTAGTTCGTAGTAGTGCCA
CCCACAAAATCAGTCGAGCCCGATAACTATCTACTGATCGATATCGCCTC
TCCACCCACATACACGCCTTCCCCTCCCCAGGTGGGCGCGGTGGCCCTCA
TGAAGCTGGTGACCGCCGCCGGCCCCACCCTCTCGGCCGCCCCGGGCCTC
CCGCGGCACCTGCTCGAAACCTACCTCTCCCTCAGCCGACGCCTCCTCCG
CCACCGATACGCCGGCACCTGGGCTGCGGACGCCGTTGAGACCGCCGCCA
CGGCAGTGGCCGGGCCCTGGCAGCAGCAGCAGCAGCAGCAGTGGCGGCCC
GGGGGGGGTGCAGGGGGTGCTGTGCCCTGGGACGATGATGGCGATCCCTC
TTCGCCGCCCCCGTTGCACGCCGGGAGCACGCGGCTGCTCCTCGCGTGCC
TTTGTAAGCTGCTGGGGGCAGGCTTGGGTTCCGGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3154112..3157446+

>mRNA_S-ischiensis_contig9.20778.1 ID=mRNA_S-ischiensis_contig9.20778.1|Name=mRNA_S-ischiensis_contig9.20778.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1098bp|location=Sequence derived from alignment at S-ischiensis_contig9:3154112..3157446+ (Schizocladia ischiensis KU_0333)
ATGGAGGCTTTGCCGCGGCTGCCAGCGGGGGCGGCGGCGCTGCAGAGGGC
CGGGGCGGTGTTGGCGGGGTCGTTGGCGCCGTGGCTGGGGTCGCGGCCGG
CGCTGCTGGCGCACGCCTTCAGTCAGATGGAGGCTTTGCCGCGGCTGCCA
GCGGGGGCGGCGGCGCTGCAGAGGGCCGGGGCGGTGTTGGCGGGGTCGTT
GGCGCCGTGGCTGGGGTCGCGGCCGGCGCTGCTGGCGCACGCCTTCAGTC
AGGTGGTGGGGAGCCTCCAGGTGGCGGAGGAAGGGCGGCCTCACTCCATG
CGGACCAAAGGGGAGGACCACGTGGTGGGGAGCCTCCAGGTGGCGGAGGA
AGGGCGGCCTCACTCCATGCGGACCAAAGGGGAGGACCACGTGGGCGCGG
TGGCCCTCATGAAGCTGGTGACCGCCGCCGGCCCCACCCTCTCGGCCGCC
CCGGGCCTCCCGCGGCACCTGCTCGAAACCTACCTCTCCCTCAGCCGACG
CCTCCTCCGCCACCGATACGCCGGCACCTGGGCTGCGGACGCCGTTGAGA
CCGCCGCCACGGCAGTGGCCGGGCCCTGGCAGCAGCAGCAGCAGCAGCAG
TGGCGGCCCGGGGGGGGTGCAGGGGGTGCTGTGCCCTGGGACGATGATGG
CGATCCCTCTTCGCCGCCCCCGTTGCACGCCGGGAGCACGCGGCTGCTCC
TCGCGTGCCTTTGTAAGCTGCTGGGGGCAGGCTTGGGTTCCGGTGTGGGC
GCGGTGGCCCTCATGAAGCTGGTGACCGCCGCCGGCCCCACCCTCTCGGC
CGCCCCGGGCCTCCCGCGGCACCTGCTCGAAACCTACCTCTCCCTCAGCC
GACGCCTCCTCCGCCACCGATACGCCGGCACCTGGGCTGCGGACGCCGTT
GAGACCGCCGCCACGGCAGTGGCCGGGCCCTGGCAGCAGCAGCAGCAGCA
GCAGTGGCGGCCCGGGGGGGGTGCAGGGGGTGCTGTGCCCTGGGACGATG
ATGGCGATCCCTCTTCGCCGCCCCCGTTGCACGCCGGGAGCACGCGGCTG
CTCCTCGCGTGCCTTTGTAAGCTGCTGGGGGCAGGCTTGGGTTCCGGT
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