mRNA_S-ischiensis_contig9.20775.1 (mRNA) Schizocladia ischiensis KU_0333
|
Overview
Homology
BLAST of mRNA_S-ischiensis_contig9.20775.1 vs. uniprot
Match: D7FSA2_ECTSI (Xpo1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA2_ECTSI) HSP 1 Score: 233 bits (595), Expect = 1.620e-67 Identity = 115/212 (54.25%), Postives = 151/212 (71.23%), Query Frame = 1
Query: 55 GGAGKMEDDALARDVALLRNALLVMLGAGRNGPNQNPKQRLLAAEWLHSFRKKDETWGACLAVVSAPTGHLTGQVSPEEQLFASQALLYKCRRRQQAITGADVQTLCQLALRFAVPGMRPVLTQLCLGICACAIRHVDWEVSSVLPDLLRFCEEAAAHAAPGDPGPRLLMLELLTVLPEEAELKYGITVTPQRRASFLAALREGPGGGSLAV 690
G AG +A+ RDV L+ A+ V+LG P+ +PK+RL A EWLHSF+++D+ W AC+AV+ AP G QV EQ+FASQALLYKCRRR+ AI+G DV L QLAL+F G+R VL QLCLG+CACA+RH W+ S V+PD++ +C++A+ A GDPGPR+LMLELLTVLP+EA + GI+ P+RR FL LR+G G LA+
Sbjct: 6 GMAGAPTPEAIDRDVRTLKEAVRVVLGGYGGTPSGDPKERLRATEWLHSFQRRDDAWSACVAVLGAPRGVADNQVGLNEQIFASQALLYKCRRRRAAISGDDVGCLLQLALQFTGRGLRAVLVQLCLGVCACAVRHSGWDSSKVVPDMVMYCQKASEDAGHGDPGPRVLMLELLTVLPDEATARAGISAPPERRREFLWTLRQGGEAGRLAL 217
BLAST of mRNA_S-ischiensis_contig9.20775.1 vs. uniprot
Match: A0A6H5L1R2_9PHAE (Xpo1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1R2_9PHAE) HSP 1 Score: 155 bits (393), Expect = 6.700e-40 Identity = 86/187 (45.99%), Postives = 109/187 (58.29%), Query Frame = 1
Query: 238 AVVSAPTGHLTGQVSPEEQLFASQALLYKCRRRQQAITGADVQTLCQLALRFAVPGMRPVLTQ------------------------------------LCLGICACAIRHVDWEVSSVLPDLLRFCEEAAAHAAPGDPGPRLLMLELLTVLPEEAELKYGITVTPQRRASFLAALREGPGGGSLAV 690
AV+ AP G QV EQ+FASQALLYKCRRR+ AI+G DV L QLAL+F G+R VL Q LCLG+CACA+RH W+ S V+PD++ +C++A+ GDPGPR+LMLELLTVLP+EA + GI+ P+RR FL LR+G G LA+
Sbjct: 25 AVLGAPRGVADNQVGLNEQIFASQALLYKCRRRKAAISGDDVGCLLQLALQFTGRGLRAVLVQEQNVSRPSLLPIATRPFLKSVSLGCLCKHGRNPELKLCLGVCACAVRHSGWDSSKVVPDMVMYCQKASEDTGHGDPGPRVLMLELLTVLPDEATARAGISAPPERRKEFLWTLRQGGEAGRLAL 211
BLAST of mRNA_S-ischiensis_contig9.20775.1 vs. uniprot
Match: A0A383V7P9_TETOB (Importin N-terminal domain-containing protein n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383V7P9_TETOB) HSP 1 Score: 63.9 bits (154), Expect = 3.880e-8 Identity = 57/167 (34.13%), Postives = 76/167 (45.51%), Query Frame = 1
Query: 181 AAEWLHSFRKKDETWGACLAVVSAPTGHLTGQVSPEEQLFASQALLYKCRRRQQAITGADV----QTLCQLALRFAVPGMRPVLTQLCLGICACA--IRHVDWEVSSVLPDLL-RFCEEAAAHAAPGDPGPRLLMLELLTVLPEEAELKYGITVTPQRRASFLAALR 660
A WL ++ E W A++ P+ E F +Q L K +R + + V +L QL LRF G V TQLCL + A A + W VL L+ RF + A A MLELLTVLP+EA+ + I P+RRA+F A LR
Sbjct: 24 ADRWLERWQSSSEAWTVANAILHNPSS------GAEYTYFCAQTLKTKVQRDYEELPAESVPQLRDSLLQLLLRFG-HGSPAVRTQLCLAMAALAAHLPAAQWSEGGVLRWLMERFSGQDPAVAMS-------CMLELLTVLPQEADSRK-IACRPERRAAFAAELR 175
BLAST of mRNA_S-ischiensis_contig9.20775.1 vs. uniprot
Match: A0A7S0IQ92_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IQ92_9EUKA) HSP 1 Score: 62.0 bits (149), Expect = 4.210e-8 Identity = 52/171 (30.41%), Postives = 75/171 (43.86%), Query Frame = 1
Query: 142 RNGPNQNPKQRLLAAEWLHSFRKKDETWGACLAVVSAPTGHLTGQVSPEEQLFASQALLYKCRRRQQAITGADVQTLCQLALRFAV---PGMRPVLTQLCLGICACAIRHVDWEVSSVLPDLLRFCEEAAAHAAPGDPGPRLLMLELLTVLPEEAELKYGITVTPQRRASF 645
+ P P Q A +WL F+ E W ++S +S +FA+Q + K + + + L + V G PVLTQLCL I A+ W+ +V+PDL++ A A P +LELL VLPEEAE Y + V P++R F
Sbjct: 11 QQNPGSTPAQLKEANKWLEHFQGTTEAWTTADQLLSLDNSSNDPLLSATH-VFAAQTMRTKIQYDWAELPADSHKALRSSLMAHIVRFGQGPGPVLTQLCLAIATLALHMESWK--TVVPDLIQALTTPAEQATSKLP----CLLELLGVLPEEAE-NYKVGVIPRQRDEF 173
BLAST of mRNA_S-ischiensis_contig9.20775.1 vs. uniprot
Match: A0A7S4FDD1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FDD1_CHRCT) HSP 1 Score: 61.2 bits (147), Expect = 3.110e-7 Identity = 64/211 (30.33%), Postives = 92/211 (43.60%), Query Frame = 1
Query: 106 LRNALLVMLGAGRNGPNQNPKQRLLAAEWLHSFRKKDETWGACLAVVSAP----------TGHLT----GQVS---------PEEQLFASQAL----LYKCRRRQQAITGADVQTLCQLALRFAVPGMRPVLTQLCLGICACAIRHVDWEVSSVLPDLLRFCEEAAAHAAPGDPGPRLLMLELLTVLPEEAELKYGITVTPQRRASFLAAL 657
+R A LV +G P+Q A WL SF+ E W ++S G LT G V+ P +FA+Q + +Y + A +L +RF G PVLTQLCL + A+ +W +V+PDL++ A A P +LELLTVLPEEAE + + V P++R +F A+
Sbjct: 4 VRAAFLVQQSSG-----STPQQLREANTWLESFQSTREAWTVADQLLSLTDDTPADNANSNGALTALNGGGVANGASRDPLLPSLHVFAAQTMRTKIVYDWAELPKESHAALRGSLIAHVVRFG-QGPGPVLTQLCLAVATMALHMDEWR--TVVPDLIQALTTPAESATTKLP----CLLELLTVLPEEAE-NFKVAVLPKQREAFRQAV 201
BLAST of mRNA_S-ischiensis_contig9.20775.1 vs. uniprot
Match: A0A2V0NVM0_9CHLO (Importin N-terminal domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NVM0_9CHLO) HSP 1 Score: 58.9 bits (141), Expect = 1.790e-6 Identity = 55/175 (31.43%), Postives = 80/175 (45.71%), Query Frame = 1
Query: 154 NQNPKQRLLAAEWLHSFRKKDETWGACLAVVSAPTGHLTGQVSPEEQLFASQALLYKCRRRQQAITGADV----QTLCQLALRFAVPGMRPVLTQLCLGICACAIRHVDWEVSSVLPDLLRFCEEAAAHAAPGDPGPRL-LMLELLTVLPEEAELKYGITVTPQRRASFLAALRE 663
+++ ++ A +WL +++ E W V+ P S + Q F +Q L K +R + + V +L L +RFA V TQL L + A A HV L F E AA A G L MLE+LTVLP+EA+ + I P+RRA+F LR+
Sbjct: 16 SEDQATKVEANKWLDQWQQTPEAWSVADRVLHDPAS------SQDLQQFCAQTLKTKVQRDFEELPPEAVPALRDSLFALLIRFAAARAAAVRTQLALALAALAA-HVPAPAWGEGGALRWFAERFAAQAGAGAGEVGLSCMLEMLTVLPQEADSRK-IACRPERRAAFEEELRQ 182
BLAST of mRNA_S-ischiensis_contig9.20775.1 vs. uniprot
Match: R1CGE8_EMIHU (Xpo1 domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CGE8_EMIHU) HSP 1 Score: 58.9 bits (141), Expect = 1.830e-6 Identity = 53/182 (29.12%), Postives = 74/182 (40.66%), Query Frame = 1
Query: 151 PNQNPKQRLLAAEWLHSFRKKDETWGACLAVVSAPTGHLTGQVSPEEQLFASQALLYKCRRRQQAITGADVQTLCQLALRFAV---PGMRPVLTQLCLGICACAIRHVDWEVSSVLPDLLRFCEEAAAHAAPGDPGPRL---------LMLELLTVLPEEAELKYGITVTPQRRASFLAALR 660
P P+ A WL F+ E W ++S P + + +FA+Q L K + + L L AV G + VLTQLCL + A+ W +P+L+ A A P L +LELLTV+PEEAE + + V P+RR F LR
Sbjct: 14 PQARPEHIRDANLWLERFQSTTEAWTVADGLLSLPAEQVG---NGSAHVFAAQTLRAKIQYDWAELPPQSHAALRDSLLAHAVRYSAGPQVVLTQLCLAVATLALHMEAW--GQAVPELIGRFTSPPAEALANPPFGSLPLLALAKLPCLLELLTVMPEEAE-NFKVAVMPRRRDEFRGLLR 189
BLAST of mRNA_S-ischiensis_contig9.20775.1 vs. uniprot
Match: A0A6H5KUP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUP5_9PHAE) HSP 1 Score: 55.1 bits (131), Expect = 4.790e-6 Identity = 22/43 (51.16%), Postives = 32/43 (74.42%), Query Frame = 1
Query: 112 NALLVMLGAGRNGPNQNPKQRLLAAEWLHSFRKKDETWGACLA 240
NA+ V+LG P+ +PK+RL A EWLHSF+++D+ W AC+A
Sbjct: 64 NAVRVVLGGYGGTPSGDPKERLRATEWLHSFQRRDDAWSACVA 106
BLAST of mRNA_S-ischiensis_contig9.20775.1 vs. uniprot
Match: A0A0D2JDW3_9CHLO (Importin N-terminal domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2JDW3_9CHLO) HSP 1 Score: 56.6 bits (135), Expect = 6.860e-6 Identity = 55/165 (33.33%), Postives = 79/165 (47.88%), Query Frame = 1
Query: 181 AAEWLHSFRKKDETWGACLAVVSAPTGHLTGQVSPEEQLFASQALLYKCRRRQQAITGADV----QTLCQLALRFAVPGMRPVLTQLCLGICACAIRHVDWEVSSVLPDLLR-FCEEAAAHAAPGDPGPRLLMLELLTVLPEEAELKYGITVTPQRRASFLAALR 660
A WL ++++ E WG V+ P+ S + Q F +Q L K +R + + V +L L LRFA + V TQL L + A A HV +LR F E A+ A+ MLE+LTVLP+EA+ + I+ P+RRA+F LR
Sbjct: 25 ANRWLDTWQQTPEAWGVSDRVLHDPSS------SQDLQQFCAQTLKTKVQRDFEELPQDAVPQLRDSLFALLLRFANARAQAVRTQLALALAALAA-HVPAAAWGGEGGVLRWFAERFASQASDVALS---CMLEILTVLPQEADSRK-ISCRPERRAAFQEELR 178
BLAST of mRNA_S-ischiensis_contig9.20775.1 vs. uniprot
Match: A0A8H6XWM2_9AGAR (Importin N-terminal domain-containing protein n=1 Tax=Mycena venus TaxID=2733690 RepID=A0A8H6XWM2_9AGAR) HSP 1 Score: 56.2 bits (134), Expect = 1.470e-5 Identity = 54/194 (27.84%), Postives = 84/194 (43.30%), Query Frame = 1
Query: 94 DVALLRNALLVMLGAGRNGPNQNPKQRLLAAEWLHSFRKKDETWGACLAVVSAPTGHLTGQVSPEEQLFASQALLYKCRRRQQAITGADVQTLCQL---ALRFAVPGMRPVLTQLCLGICACAIRHVDWEVSSVLPDLLRFCEEAAAHAAPGDPGPRLLMLELLTVLPEEAELKYGITVTP----QRRASFLAA 654
DV + +AL V GA P++ +R A WL F+ + W C ++ LT V P QLFA+Q K + A++ + AL+ G +PV QLCL I A++ W + ++F ++ +P ++LE LT+LPEE + I +T +R A L A
Sbjct: 3 DVQAVLSALAVFDGA----PDKVSLER--ANTWLQDFQHSPDAWATCNVLL------LTPNVPPSAQLFAAQTFRAKVTYDLHQVDPANLPSFRDTLIAALQRHHNGPKPVKIQLCLAIAGLALQFPAWS------NAVQFMIDSFGR----NPETVPILLEFLTILPEELNNNHKIPITDDEYTEREAYLLTA 174 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20775.1 >prot_S-ischiensis_contig9.20775.1 ID=prot_S-ischiensis_contig9.20775.1|Name=mRNA_S-ischiensis_contig9.20775.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=230bp APARLASGIVPSREEAGTGGAGKMEDDALARDVALLRNALLVMLGAGRNGback to top mRNA from alignment at S-ischiensis_contig9:3144539..3148333+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig9.20775.1 ID=mRNA_S-ischiensis_contig9.20775.1|Name=mRNA_S-ischiensis_contig9.20775.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3795bp|location=Sequence derived from alignment at S-ischiensis_contig9:3144539..3148333+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig9:3144539..3148333+ >mRNA_S-ischiensis_contig9.20775.1 ID=mRNA_S-ischiensis_contig9.20775.1|Name=mRNA_S-ischiensis_contig9.20775.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1380bp|location=Sequence derived from alignment at S-ischiensis_contig9:3144539..3148333+ (Schizocladia ischiensis KU_0333)back to top |