mRNA_S-ischiensis_contig9.20773.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20773.1
Unique NamemRNA_S-ischiensis_contig9.20773.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20773.1 vs. uniprot
Match: A0A835YIJ9_9STRA (DDHD domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIJ9_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.160e-22
Identity = 46/56 (82.14%), Postives = 52/56 (92.86%), Query Frame = 2 
Query:   11 VDVELNGRLAGGFRVDYSLQESEMEVTNEYLFALGAHVIYWTSKDVSLFAAKRLLL 178
            VD E NGRLAGG+RVDYSLQE E+EVTNEYLFALGAHVIYWTSKD+SLF AK+++L
Sbjct: 1221 VDFEKNGRLAGGYRVDYSLQEKEIEVTNEYLFALGAHVIYWTSKDLSLFMAKQIML 1276
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BLAST of mRNA_S-ischiensis_contig9.20773.1 vs. uniprot
Match: D8LDT5_ECTSI (DDHD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDT5_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 4.520e-18
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 2 
Query:    8 EVDVELNGRLAGGFRVDYSLQESEMEVTNEYLFALGAHVIYWTSKDVSLFAAKRLL 175
            E D+E NG LAGG RVDY LQE E EVTNEY+FALG+HVIYW+SKDVSLF A++++
Sbjct: 1086 EEDLERNGALAGGRRVDYCLQEKEFEVTNEYIFALGSHVIYWSSKDVSLFVAQQVV 1141
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BLAST of mRNA_S-ischiensis_contig9.20773.1 vs. uniprot
Match: A0A6H5KBT1_9PHAE (DDHD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT1_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 4.530e-18
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 2 
Query:    8 EVDVELNGRLAGGFRVDYSLQESEMEVTNEYLFALGAHVIYWTSKDVSLFAAKRLL 175
            E D+E NG LAGG RVDY LQE E EVTNEY+FALG+HVIYW+SKDVSLF A++++
Sbjct: 1114 EEDLERNGALAGGRRVDYCLQEKEFEVTNEYIFALGSHVIYWSSKDVSLFVAQQVV 1169
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BLAST of mRNA_S-ischiensis_contig9.20773.1 vs. uniprot
Match: A0A7R9YCD7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCD7_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 4.310e-15
Identity = 35/54 (64.81%), Postives = 45/54 (83.33%), Query Frame = 2 
Query:   14 DVELNGRLAGGFRVDYSLQESEMEVTNEYLFALGAHVIYWTSKDVSLFAAKRLL 175
            DV   GRL  G R+DY+LQE E+E+TNEY+FA+GAHVIYW+SKD+S F A++LL
Sbjct: 1363 DVPFFGRLNDGDRIDYALQEKEIEITNEYVFAIGAHVIYWSSKDLSYFIAEQLL 1416
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BLAST of mRNA_S-ischiensis_contig9.20773.1 vs. uniprot
Match: F0W6D2_9STRA (Phospholipase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6D2_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.040e-14
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 2 
Query:    8 EVDVELNGRLAGGFRVDYSLQESEMEVTNEYLFALGAHVIYWTSKDVSLFAAKRLL 175
            E  + + GRL+ G  +DY LQE+E+E+TNEYLFAL AHVIYWT++D SLF A+ L+
Sbjct:  908 ESSINMYGRLSDGLPIDYCLQENEIEITNEYLFALTAHVIYWTNRDASLFVAQHLM 963
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BLAST of mRNA_S-ischiensis_contig9.20773.1 vs. uniprot
Match: A0A225UWY4_9STRA (PhosphoLipase (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UWY4_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.920e-14
Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 2 
Query:   14 DVELNGRLAGGFRVDYSLQESEMEVTNEYLFALGAHVIYWTSKDVSLFAAKRLLL 178
            +V + GRL  G  +DYSLQE+E+E+ NEYLFAL AHVIYW+++D SLF A++L+L
Sbjct:  165 NVAVFGRLCQGLPIDYSLQENEIEIANEYLFALTAHVIYWSNRDASLFVAQKLIL 219
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BLAST of mRNA_S-ischiensis_contig9.20773.1 vs. uniprot
Match: A0A024GPN7_9STRA (DDHD domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GPN7_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.730e-14
Identity = 32/53 (60.38%), Postives = 44/53 (83.02%), Query Frame = 2 
Query:   17 VELNGRLAGGFRVDYSLQESEMEVTNEYLFALGAHVIYWTSKDVSLFAAKRLL 175
            + + GRL+ G  +DY+LQE+E+E+TNEYLFAL AHVIYWT++D SLF A+ L+
Sbjct:  914 ISVYGRLSDGLPIDYTLQENEIEITNEYLFALTAHVIYWTNRDASLFVAQHLM 966
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BLAST of mRNA_S-ischiensis_contig9.20773.1 vs. uniprot
Match: A0A2D4C4P3_PYTIN (DDHD domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4P3_PYTIN)

HSP 1 Score: 76.6 bits (187), Expect = 3.780e-14
Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 2 
Query:   14 DVELNGRLAGGFRVDYSLQESEMEVTNEYLFALGAHVIYWTSKDVSLFAAKRLLL 178
            + E+ GRL  G  +DYSLQE+E+E+TNEYLFAL AHVIYW ++D SLF A++++L
Sbjct: 1092 NYEVYGRLCQGLPIDYSLQENEIEITNEYLFALTAHVIYWGNRDASLFVAQKMIL 1146
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BLAST of mRNA_S-ischiensis_contig9.20773.1 vs. uniprot
Match: A0A662WPA7_9STRA (DDHD domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WPA7_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 5.090e-14
Identity = 33/55 (60.00%), Postives = 44/55 (80.00%), Query Frame = 2 
Query:   14 DVELNGRLAGGFRVDYSLQESEMEVTNEYLFALGAHVIYWTSKDVSLFAAKRLLL 178
            +V + GRL  G  +DYSLQE+E+E+ NEYLFAL AHVIYW ++D SLF A++L+L
Sbjct:  124 NVAVFGRLCQGLPIDYSLQENEIEIANEYLFALTAHVIYWGNRDASLFVAQKLIL 178
[Close]
BLAST of mRNA_S-ischiensis_contig9.20773.1 vs. uniprot
Match: K3X310_GLOUD (DDHD domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X310_GLOUD)

HSP 1 Score: 76.3 bits (186), Expect = 5.120e-14
Identity = 32/59 (54.24%), Postives = 47/59 (79.66%), Query Frame = 2 
Query:    2 DAEVDVELNGRLAGGFRVDYSLQESEMEVTNEYLFALGAHVIYWTSKDVSLFAAKRLLL 178
            +  VD +L G L  G+ +DY+LQE+E+E+ NEYLFAL AHVIYW+++D SLF A++++L
Sbjct:  989 EGAVDRDLFGSLCQGYPIDYTLQENEIEIANEYLFALTAHVIYWSNRDASLFVAQKMIL 1047
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YIJ9_9STRA2.160e-2282.14DDHD domain-containing protein n=2 Tax=Tribonema m... [more]
D8LDT5_ECTSI4.520e-1871.43DDHD domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KBT1_9PHAE4.530e-1871.43DDHD domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7R9YCD7_9STRA4.310e-1564.81Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
F0W6D2_9STRA2.040e-1458.93Phospholipase putative n=1 Tax=Albugo laibachii Nc... [more]
A0A225UWY4_9STRA2.920e-1460.00PhosphoLipase (Fragment) n=1 Tax=Phytophthora mega... [more]
A0A024GPN7_9STRA3.730e-1460.38DDHD domain-containing protein n=1 Tax=Albugo cand... [more]
A0A2D4C4P3_PYTIN3.780e-1460.00DDHD domain-containing protein n=1 Tax=Pythium ins... [more]
A0A662WPA7_9STRA5.090e-1460.00DDHD domain-containing protein (Fragment) n=2 Tax=... [more]
K3X310_GLOUD5.120e-1454.24DDHD domain-containing protein n=1 Tax=Globisporan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3122491..3123774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size311
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817369.098429-CDS-S-ischiensis_contig9:3122490..31225601622817369.098429-CDS-S-ischiensis_contig9:3122490..3122560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3122491..3122560 +
1695741062.0506556-CDS-S-ischiensis_contig9:3122490..31225601695741062.0506556-CDS-S-ischiensis_contig9:3122490..3122560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3122491..3122560 +
1622817369.1094406-CDS-S-ischiensis_contig9:3123535..31237741622817369.1094406-CDS-S-ischiensis_contig9:3123535..3123774Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3123536..3123774 +
1695741062.0781286-CDS-S-ischiensis_contig9:3123535..31237741695741062.0781286-CDS-S-ischiensis_contig9:3123535..3123774Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3123536..3123774 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20773.1prot_S-ischiensis_contig9.20773.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3122491..3123774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20773.1

>prot_S-ischiensis_contig9.20773.1 ID=prot_S-ischiensis_contig9.20773.1|Name=mRNA_S-ischiensis_contig9.20773.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=103bp
GRGGGCGVERSLGRRFPGGLLLTGVRDGGDKRIPLCPGRPRHILDQQGRQ
PLCGQAPAARPRRRSHSRRWQRRRRRWRRPRLRRPGPRTRGVKQRKKETG
GR*
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mRNA from alignment at S-ischiensis_contig9:3122491..3123774+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20773.1 ID=mRNA_S-ischiensis_contig9.20773.1|Name=mRNA_S-ischiensis_contig9.20773.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1284bp|location=Sequence derived from alignment at S-ischiensis_contig9:3122491..3123774+ (Schizocladia ischiensis KU_0333)
GGACGCGGAGGTGGATGTGGAGTTGAACGGTCGCTTGGCAGGCGGTTTCC
GGGTGGACTACTCCTTACAGGCGAGGAGCCTGCCGTGCGTGCTTGCAGTA
GTAGCGTGCCCAGGGCAGAGGCCGAGCCCTCGGGCGGATTGTGCGTGGGG
CAGCTGGGGCGGTGATTCATAAAATAAATTGTAGCGAGGTACAATCGCAC
GTGTGTAAGATTGAGTGTTTTTAGTTTTAAGTACTCGAGTACTTGTATTT
TGATGGCATGCGAGTTCCGGGCCGCGTCCCAACAACCTAAGGCGGGGACC
TCACCAGAAGAGCTCAAACGCTTCCTAGGATGCGTTCAACGCGAGTTGCT
TTTTACTCGGGGCTGTCGGCAAAGAAAGCACGCAGGTTCTGTTGCAAGAC
AAGCCAGTGAGACATACACATACACATACGTAGCATATATATATATATAT
ATATGTACTCACGTGGTGCTTGCCGTAGTCCCGAGACCATTGACCCCGCG
CCTCGTGCGAGACGGAGTATATATGTATATATACTCTATACTTCGAAGTA
TATTTAAGCTAAGAGATCATGAACATACCTGCATGCTGCACTTGCTCGCC
ATCTGTGTGTGAAGCACTACAGTACGGTAGGAGTACTTATACTTCGTACA
ATATGAGTACGAAGTACATACCACTGTAGTAGTAGTACTTGAGTGCTATG
GGTACATAAAGTACGTACTTGAAGTACCTACATCGGGAAGTGCATACTGT
AGTACGGTAGGGAAGTACATACAGTCGTACAGTATGCTCTGCTGAATGAA
ACCGCACGGGAGGGCGTCCGTGCCCGGCCCGGAGCCCGCGGAATGGTTGA
GCAGGGACGCCTTCGTTTATGGCTACTTGTCGTCTCGCGAAACGAGAATC
CAGCTTTGGGCCGCCGCGTTCAGCCGACATGAGCGTGATCGACAAGTAAA
TCGAATGTGCTCTCGTTGTGAAGCACGGTGTCATGTGCCGTCGCCACCCG
CCTGCGCTCCCTTCCTCCCTGCGCAACCTCGATATGCTGCCGCAGGAGTC
CGAGATGGAGGTGACAAACGAATACCTCTTTGCCCTGGGCGCCCACGTCA
TATACTGGACCAGCAAGGACGTCAGCCTCTTTGCGGCCAAGCGCCTGCTG
CTCGGCCGAGGAGGCGGAGTCACAGTCGGCGCTGGCAGCGGAGGCGGCGG
CGGTGGCGGCGGCCGAGACTCCGGAGGCCAGGGCCACGAACGCGGGGGGT
GAAGCAGAGGAAGAAGGAGACAGGAGGACGATGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3122491..3123774+

>mRNA_S-ischiensis_contig9.20773.1 ID=mRNA_S-ischiensis_contig9.20773.1|Name=mRNA_S-ischiensis_contig9.20773.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=618bp|location=Sequence derived from alignment at S-ischiensis_contig9:3122491..3123774+ (Schizocladia ischiensis KU_0333)
GGACGCGGAGGTGGATGTGGAGTTGAACGGTCGCTTGGCAGGCGGTTTCC
GGGTGGACTACTCCTTACAGGGACGCGGAGGTGGATGTGGAGTTGAACGG
TCGCTTGGCAGGCGGTTTCCGGGTGGACTACTCCTTACAGGAGTCCGAGA
TGGAGGTGACAAACGAATACCTCTTTGCCCTGGGCGCCCACGTCATATAC
TGGACCAGCAAGGACGTCAGCCTCTTTGCGGCCAAGCGCCTGCTGCTCGG
CCGAGGAGGCGGAGTCACAGTCGGCGCTGGCAGCGGAGGCGGCGGCGGTG
GCGGCGGCCGAGACTCCGGAGGCCAGGGCCACGAACGCGGGGGGTGAAGC
AGAGGAAGAAGGAGACAGGAGGACGATGAGAGTCCGAGATGGAGGTGACA
AACGAATACCTCTTTGCCCTGGGCGCCCACGTCATATACTGGACCAGCAA
GGACGTCAGCCTCTTTGCGGCCAAGCGCCTGCTGCTCGGCCGAGGAGGCG
GAGTCACAGTCGGCGCTGGCAGCGGAGGCGGCGGCGGTGGCGGCGGCCGA
GACTCCGGAGGCCAGGGCCACGAACGCGGGGGGTGAAGCAGAGGAAGAAG
GAGACAGGAGGACGATGA
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