mRNA_S-ischiensis_contig9.20770.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20770.1
Unique NamemRNA_S-ischiensis_contig9.20770.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20770.1 vs. uniprot
Match: A0A7S4I9Q7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I9Q7_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.810e-11
Identity = 26/59 (44.07%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:   70 VGEDGNLDMCDVCHKERGRLLCCDSCPRVYHELCLPEGPWRSIIAFQGADEKWHCHRCL 246
            V EDGN   CD+CH +RG +LCCD CP+V+H+ CL  G    I+     ++ W+C++C 
Sbjct:  220 VAEDGNFYRCDICH-DRGNVLCCDGCPKVFHKKCLSPGTASRIV-----EDPWYCNKCF 272
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BLAST of mRNA_S-ischiensis_contig9.20770.1 vs. uniprot
Match: D7FI07_ECTSI (GF22528 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI07_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 4.200e-9
Identity = 29/59 (49.15%), Postives = 34/59 (57.63%), Query Frame = 1 
Query:   70 VGEDGNLDMCDVCHKERGRLLCCDSCPRVYHELCLPEGPWRSIIAF-QGADEKWHCHRC 243
            VGEDGN   C VC  E G + CCD CPRV+HE CLP G    + A  Q   + W+C  C
Sbjct:  305 VGEDGNHFFCSVCG-ESGDITCCDQCPRVFHEECLPIGTDSHLAAHHQTEKDPWYCPSC 362
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BLAST of mRNA_S-ischiensis_contig9.20770.1 vs. uniprot
Match: A0A6H5JJY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY6_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 5.770e-9
Identity = 29/59 (49.15%), Postives = 34/59 (57.63%), Query Frame = 1 
Query:   70 VGEDGNLDMCDVCHKERGRLLCCDSCPRVYHELCLPEGPWRSIIAFQGADEK-WHCHRC 243
            VGEDGN   C  C  E G L CCD CPRV+HE CLP G    + A +  +E  W+C  C
Sbjct:  778 VGEDGNHFFCSACG-ESGDLTCCDECPRVFHEECLPIGTDSHLAANRQTEEDPWYCPSC 835
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BLAST of mRNA_S-ischiensis_contig9.20770.1 vs. uniprot
Match: D7FHY8_ECTSI (Trithorax 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY8_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 5.780e-9
Identity = 29/59 (49.15%), Postives = 34/59 (57.63%), Query Frame = 1 
Query:   70 VGEDGNLDMCDVCHKERGRLLCCDSCPRVYHELCLPEGPWRSIIAFQGADEK-WHCHRC 243
            VGEDGN   C  C  E G L CCD CPRV+HE CLP G    + A +  +E  W+C  C
Sbjct:  878 VGEDGNHFFCSACG-ESGDLTCCDECPRVFHEECLPIGTDSHLAANRQTEEDPWYCPSC 935
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BLAST of mRNA_S-ischiensis_contig9.20770.1 vs. uniprot
Match: A0A8B7M8U7_DROEL (chromodomain-helicase-DNA-binding protein Mi-2 homolog n=1 Tax=Drosophila elegans TaxID=30023 RepID=A0A8B7M8U7_DROEL)

HSP 1 Score: 57.0 bits (136), Expect = 1.750e-7
Identity = 28/55 (50.91%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:   91 DMCDVCHKERGRLLCCDSCPRVYHELCLPEGPWRSIIAFQGADEKWHCHRCLATP 255
            + C VC ++ G+LLCCDSCP VYH  CL   P +S+   +GA   WHC RC A P
Sbjct:   37 EFCQVC-QDGGKLLCCDSCPSVYHRTCL-NPPLQSVP--KGA---WHCPRCTAPP 84
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BLAST of mRNA_S-ischiensis_contig9.20770.1 vs. uniprot
Match: A0A7S1Y314_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y314_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.770e-7
Identity = 26/58 (44.83%), Postives = 33/58 (56.90%), Query Frame = 1 
Query:   70 VGEDGNLDMCDVCHKERGRLLCCDSCPRVYHELCLPEGPWRSIIAFQGADEKWHCHRC 243
            V EDGN+D C +C K  G LLCCD CPR +H  C+        +  Q A+ +W CH C
Sbjct:  750 VVEDGNVDYCQICMKA-GNLLCCDRCPRAFHNKCMD-------VETQ-AEGEWECHLC 798
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BLAST of mRNA_S-ischiensis_contig9.20770.1 vs. uniprot
Match: A0A6H5L4S9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4S9_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 8.490e-7
Identity = 29/65 (44.62%), Postives = 34/65 (52.31%), Query Frame = 1 
Query:   70 VGEDGNLDMC------DVCHKERGRLLCCDSCPRVYHELCLPEGPWRSIIAF-QGADEKWHCHRC 243
            VGEDGN   C       VC  E G + CCD CPRV+HE CLP G    + A  Q   + W+C  C
Sbjct:  291 VGEDGNHFFCRWARDRSVCG-ESGDITCCDECPRVFHEECLPIGTNSHLAAHHQTEKDPWYCPSC 354
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BLAST of mRNA_S-ischiensis_contig9.20770.1 vs. uniprot
Match: A0A7S1UAX5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAX5_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.810e-6
Identity = 22/56 (39.29%), Postives = 31/56 (55.36%), Query Frame = 1 
Query:   76 EDGNLDMCDVCHKERGRLLCCDSCPRVYHELCLPEGPWRSIIAFQGADEKWHCHRC 243
            +DGN + C +C  + G +LCCD CPR +HE C+        +  +   E W CHRC
Sbjct:   60 DDGNNNFCSICLGD-GNILCCDLCPRSWHEHCID-------VDAKALPEVWECHRC 107
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BLAST of mRNA_S-ischiensis_contig9.20770.1 vs. uniprot
Match: A0A0L0HF36_SPIPD (PHD-type domain-containing protein n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HF36_SPIPD)

HSP 1 Score: 53.1 bits (126), Expect = 4.010e-6
Identity = 26/55 (47.27%), Postives = 31/55 (56.36%), Query Frame = 1 
Query:   85 NLDMCDVCHKERGRLLCCDSCPRVYHELCLPEGPWRSIIAFQGADEKWHCHRCLA 249
            N D C  C   RGRLLCCDSCPR +H  C+ EG + S+      +E W C  C A
Sbjct:  484 NDDHCSAC-LGRGRLLCCDSCPRAFHFHCVEEG-FESVEDVP--EESWECRNCRA 534
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BLAST of mRNA_S-ischiensis_contig9.20770.1 vs. uniprot
Match: UPI000719E6C9 (E3 ubiquitin-protein ligase TRIM33-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719E6C9)

HSP 1 Score: 52.8 bits (125), Expect = 5.470e-6
Identity = 24/55 (43.64%), Postives = 30/55 (54.55%), Query Frame = 1 
Query:   79 DGNLDMCDVCHKERGRLLCCDSCPRVYHELC-------LPEGPWRSIIAFQGADE 222
            D N D C VCH + G L+CCD CPRVYH+ C        P G W+  +  +  DE
Sbjct:  859 DPNEDWCSVCH-DGGDLVCCDYCPRVYHQTCHIPVLTAAPSGDWKCGLCREVTDE 912
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4I9Q7_9STRA3.810e-1144.07Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
D7FI07_ECTSI4.200e-949.15GF22528 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JJY6_9PHAE5.770e-949.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHY8_ECTSI5.780e-949.15Trithorax 3 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A8B7M8U7_DROEL1.750e-750.91chromodomain-helicase-DNA-binding protein Mi-2 hom... [more]
A0A7S1Y314_9STRA1.770e-744.83Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A6H5L4S9_9PHAE8.490e-744.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1UAX5_9STRA2.810e-639.29Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A0L0HF36_SPIPD4.010e-647.27PHD-type domain-containing protein n=1 Tax=Spizell... [more]
UPI000719E6C95.470e-643.64E3 ubiquitin-protein ligase TRIM33-like n=1 Tax=Pr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3071782..3073593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue3.6e-07
Seed eggNOG ortholog2880.D7FI07
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K09186,ko:K09188,ko:K11723,ko:K17346,ko:K22197
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04934,ko05202,ko05225,map00310,map04934,map05202,map05225
EggNOG free text desc.acetylation-dependent protein binding
EggNOG OGsCOG2940@1,KOG1828@1,KOG1828@2759,KOG4443@2759
EC2.1.1.43
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size266
Cds size264
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817400.5110016-CDS-S-ischiensis_contig9:3071781..30718821622817400.5110016-CDS-S-ischiensis_contig9:3071781..3071882Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3071782..3071882 +
1695741086.1172562-CDS-S-ischiensis_contig9:3071781..30718821695741086.1172562-CDS-S-ischiensis_contig9:3071781..3071882Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3071782..3071882 +
1622817400.5242312-CDS-S-ischiensis_contig9:3073430..30735931622817400.5242312-CDS-S-ischiensis_contig9:3073430..3073593Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3073431..3073593 +
1695741086.133453-CDS-S-ischiensis_contig9:3073430..30735931695741086.133453-CDS-S-ischiensis_contig9:3073430..3073593Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3073431..3073593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20770.1prot_S-ischiensis_contig9.20770.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3071782..3073593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20770.1

>prot_S-ischiensis_contig9.20770.1 ID=prot_S-ischiensis_contig9.20770.1|Name=mRNA_S-ischiensis_contig9.20770.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=88bp
MAGASAAAGSAGWGSPASAFGGSVGEDGNLDMCDVCHKERGRLLCCDSCP
RVYHELCLPEGPWRSIIAFQGADEKWHCHRCLATPQQS
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mRNA from alignment at S-ischiensis_contig9:3071782..3073593+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20770.1 ID=mRNA_S-ischiensis_contig9.20770.1|Name=mRNA_S-ischiensis_contig9.20770.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1812bp|location=Sequence derived from alignment at S-ischiensis_contig9:3071782..3073593+ (Schizocladia ischiensis KU_0333)
ATGGCCGGAGCAAGTGCAGCCGCCGGCAGTGCGGGGTGGGGATCTCCTGC
TTCGGCGTTTGGGGGCTCCGTCGGAGAAGACGGCAACCTGGACATGTGCG
AGTGAGTGAGCATCAATGATGGAGTATCGATCAGCAGATGTTATCGGGCT
CGACTGATTTTGTGGGTGGTGTTTCTAACTACTTTGAGTTGGTGTGCTAG
TGAGTGAGCGTCAGTGATGGAATACTGATCGGCAGATACTTATTGGGCTC
GACTGATGTTGTGGGTGGTGTTTCTACAGTACCTACTATGATTTAGTGCG
GGTCCAACTATCGAATATCGACTATCGATAGATGTACTTCCTATAGATCA
GTACTGTCGATAAATAGGTTGATTTGCTTGGATATTCCCTCACTGGTGAG
CGTGAGCGTGGAATGCGGCTAGAACCCAAGGCTGGTGGAGCGGATTACAG
CAGGGGGGGGGTTGTCCGCACGTGCCTGAAAGGCATGAAGCTCAAGTTCG
GAGCCCCCCCCCCACCCGTCTTGCGCCTCGGGTGTTGGGGCCTTGGGTGG
CAGAGATGGCAAAGCTCGTTCGCCTTGGGGGTGCACTGTCTTTTTTCCCT
CCCCCACGATGTTCTTCCGCAAGACAGTGAGGGATTTGGAGTACTTGGCA
GCAGTATGTCTGTCTCTCTCCCCCGGTCTCTCTCTCTCTCTCTATCTCTC
TTCCCCCCCCTCCGCCCCGCCGGCCTCTTCCTTGCCGCGCTCTGGCATGC
TCCAATTGTGCTCGACCCTGAAGATTTCGGACTGCCCGTGCCTCGTGTGC
CATGCAGCGCAAGCGGCTGCTCTCTTAGAGCGCAGCCACAGCCGTTACCA
GGATGCTTCGAAGTACCCACATGACCAGGAACTGTACTGCGCTCGTGCTG
TGCTGTACTTGTACTCTACATAGTGCTGTGCCGTAGACGAGAGGACAGTC
GCTCTACGCGTGAAGGGGCCCGGCCGAACCAGCGCAGATGGCAGGATCTG
CACAGCACAGCACGGTGCAGAACAGCGCTGTACCAGTACTCTGCTCTAGT
GTAGATGAGAAGAGCTACTTTAGTGTTGTGTTTCTGTACGAAGTACTTAG
CTGCCTAGAAGTAGAGTACTGTACACCTGGAATCACTGTACGTCCAACCT
CTCCTTGTTGGGGAGGCTGGCTACGGCAACGAGGGGAGGGGAGGGGAGGG
GAGGTGGGCAAGGGTGGGAGGGGGGGGGGGGGGGGAGGCAGGTCGCAAGA
GATGCGTGTGAGGGCGATCGCTCTGCCTGCCTTGATATCTCTTAGTGGAA
GAGCCTCCCCAACAACAGAGGAAACAGTGCTCCGTCCTGTCGGGCACCCC
TGTGGGACGCGTGGTCAATGGCTAGAGTTGTGAACTGGCAAGGCCTACGA
GTACCAGTTTAACTGTTAGCTAGTCGTGTGACCTGTCGGTTTTAACCGGT
TGCCGGTAGCGGCCAGCGTATTGCCAAAATCAGCGAAGAAAGGTCCTGTC
ACCCGTTCCGGCTACATGATTGGCCACCGGTCGGTTAACCGGTTAAACCA
GTTAACTGGTAAAAATCGGCACCAGTTCACAGCACTATCAATGGCCCTAT
GGCTCGGCAGTCAGCTCAAGAGTGCACCCGCTCCCCTCCCTTCCCCCAGC
GTGTGCCACAAGGAGCGAGGCCGCCTCCTCTGCTGTGACAGCTGCCCCAG
GGTCTATCACGAGCTCTGCCTGCCCGAGGGCCCCTGGCGCTCCATCATCG
CCTTCCAAGGTGCGGACGAGAAATGGCACTGCCACCGCTGCCTCGCTACC
CCGCAGCAGTCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3071782..3073593+

>mRNA_S-ischiensis_contig9.20770.1 ID=mRNA_S-ischiensis_contig9.20770.1|Name=mRNA_S-ischiensis_contig9.20770.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=528bp|location=Sequence derived from alignment at S-ischiensis_contig9:3071782..3073593+ (Schizocladia ischiensis KU_0333)
ATGGCCGGAGCAAGTGCAGCCGCCGGCAGTGCGGGGTGGGGATCTCCTGC
TTCGGCGTTTGGGGGCTCCGTCGGAGAAGACGGCAACCTGGACATGTGCG
AATGGCCGGAGCAAGTGCAGCCGCCGGCAGTGCGGGGTGGGGATCTCCTG
CTTCGGCGTTTGGGGGCTCCGTCGGAGAAGACGGCAACCTGGACATGTGC
GACGTGTGCCACAAGGAGCGAGGCCGCCTCCTCTGCTGTGACAGCTGCCC
CAGGGTCTATCACGAGCTCTGCCTGCCCGAGGGCCCCTGGCGCTCCATCA
TCGCCTTCCAAGGTGCGGACGAGAAATGGCACTGCCACCGCTGCCTCGCT
ACCCCGCAGCAGTCGCGTGTGCCACAAGGAGCGAGGCCGCCTCCTCTGCT
GTGACAGCTGCCCCAGGGTCTATCACGAGCTCTGCCTGCCCGAGGGCCCC
TGGCGCTCCATCATCGCCTTCCAAGGTGCGGACGAGAAATGGCACTGCCA
CCGCTGCCTCGCTACCCCGCAGCAGTCG
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