mRNA_S-ischiensis_contig9.20769.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20769.1
Unique NamemRNA_S-ischiensis_contig9.20769.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3065760..3070709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1140
Cds size1140
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20769.1prot_S-ischiensis_contig9.20769.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3065760..3070709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817368.9685411-CDS-S-ischiensis_contig9:3065759..30659871622817368.9685411-CDS-S-ischiensis_contig9:3065759..3065987Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3065760..3065987 -
1695741061.9332333-CDS-S-ischiensis_contig9:3065759..30659871695741061.9332333-CDS-S-ischiensis_contig9:3065759..3065987Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3065760..3065987 -
1622817368.980263-CDS-S-ischiensis_contig9:3067167..30673931622817368.980263-CDS-S-ischiensis_contig9:3067167..3067393Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3067168..3067393 -
1695741061.943142-CDS-S-ischiensis_contig9:3067167..30673931695741061.943142-CDS-S-ischiensis_contig9:3067167..3067393Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3067168..3067393 -
1622817368.994246-CDS-S-ischiensis_contig9:3070023..30707091622817368.994246-CDS-S-ischiensis_contig9:3070023..3070709Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3070024..3070709 -
1695741061.957361-CDS-S-ischiensis_contig9:3070023..30707091695741061.957361-CDS-S-ischiensis_contig9:3070023..3070709Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3070024..3070709 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20769.1

>prot_S-ischiensis_contig9.20769.1 ID=prot_S-ischiensis_contig9.20769.1|Name=mRNA_S-ischiensis_contig9.20769.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=380bp
SSRGRTPAGRGSMADLVLWGSLHTPLMVENPEGDRPPSPRGRGVLDSAAL
LPAILVYLGLKDVLCHAAAVNRHWRDSSPDGLCQIGTCLYPCPSLHRSSD
CDQGLLPFHLWFDNRARAGGTFSGAELAQLQVGHDGRTADGTDSPIEDLL
VADPGLCPNLARVVVPNIITARGARSRDVASVARSVCRMACDRPGLVVDP
PLSPGMLALAGVRVAAAAADAPSPVEVIGMRETGGGGLRGSQAYAYSFRA
ESSGSGGGPSLSVFVERHLGQAGSPYDILFWVTMGGGYGRPGRTDIEALH
EEHESVVDNIFNYRLIEDLRGPLREPLSLPMAVGWLHGLRMEGVLSPLQA
DAAAGGGPRYTPAAGAGAANRPRHHHRGPA
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mRNA from alignment at S-ischiensis_contig9:3065760..3070709-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20769.1 ID=mRNA_S-ischiensis_contig9.20769.1|Name=mRNA_S-ischiensis_contig9.20769.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4950bp|location=Sequence derived from alignment at S-ischiensis_contig9:3065760..3070709- (Schizocladia ischiensis KU_0333)
AGCTCGCGCGGGCGTACACCTGCGGGGCGGGGTAGCATGGCGGACCTTGT
TTTATGGGGGTCCCTCCATACACCATTGATGGTGGAGAACCCGGAAGGCG
ACCGCCCCCCGTCCCCCCGGGGGCGGGGTGTTCTCGACTCGGCGGCGCTG
CTTCCAGCCATCCTCGTGTATTTGGGCCTGAAAGACGTGCTGTGCCACGC
GGCCGCAGTCAACAGGCACTGGCGCGACAGCTCCCCGGATGGGTTATGCC
AGATAGGAACCTGCCTGTACCCGTGCCCCTCACTGCACCGCTCCAGTGAC
TGCGACCAGGGGCTCCTCCCTTTCCACCTCTGGTTCGACAACCGCGCCCG
CGCCGGGGGGACCTTCTCCGGCGCCGAGCTGGCGCAGCTCCAAGTGGGCC
ACGACGGCCGCACCGCCGACGGCACGGATTCCCCCATCGAGGACCTCCTC
GTCGCGGACCCTGGACTGTGCCCCAACCTGGCGCGGGTGGTGGTTCCAAA
CATAATTACGGCCCGGGGGGCCCGCAGCCGGGATGTGGCCTCCGTGGCGC
GATCTGTGTGCCGAATGGCCTGCGACCGGCCCGGGCTTGTGGTGGACCCG
CCGCTTTCGCCAGGGATGTTGGCACTGGCGGGGGTGCGCGTGGCGGCCGC
GGCGGCGGATGCGCCGTCGCCAGTGGAGGTGATCGGGTAAGTGGGTGTTG
ATTCGTAGCGAGGTACAATCGCACGTGCGTGAGATTGACTGTTCTCGTAC
TAGTAGTGAGTGGGTGGCAGTGATGGAATATCAATCAGTAGATAGTTATT
CAAGCTCGACTGATTTGGTGGGTGGCGCTACTAACTACTGGGATGTAGTG
TGGGTCAAACTATCGAATATAAACTATCGATGGATGCATAGATGAGTACT
GTCGATAATAGGTTGATTTGCTTGGATATTCCGTCACTGGTGGGTGGAAA
GGAGAGGATAGTGGGCGGTGTTGTCTGCTCCGTCTCGGTCAACACGCGCG
CGTGCAGTCACAATGGCCTCAGGACTAGGTACGGCCAGCACAACGGGAGT
GCGCTCGGGTATATATATATATATATATATATATATAATATATATATATA
TTATATGTACGCACGTGGTGCTTGCCGAAGTCCCGAGACCATTGAACCCT
CGCCTCGTGCGAGAAGGAGCAGGGCGCTCGGGTATACGAGGTATATGTAT
ATGTTTCAGTACATGTTGTGCTTGCCGTAGTCGCCAGACCAGTCACCACT
GATGCGCCGTTGACGCCAGAGCAAGTGTGTATGTACAGTATACCTATACC
TATATGCTAGTACGGTACATGTATATATGCGTGTGTGTGCTTGTGACCAA
CTACTGGGGAAAAATATCGTCTTCTATTTTGGTTCGGCAAAAACCTCGTG
CGAGACGGAGCAGGGTGCTCGGGTATACGAGGTATATGTATATGTTTCAG
TACATGTTGTGCTTGCCGTAGTCGCCAGACCAGTCACCACTGATGCGCCG
TTGACGCCAGAGCAAGTGTGTATGTACAGTATACCTATACCTATGTGCTA
GTACGGTACATGTATATATGCGTGTGTGTGCTTGTGACCAACTACTGGGG
AAAAATATCGTCTTCTATTTTGGTTCTGCAAAAAAAAAAAGAAACGCGTC
ACAATTCGGCCGGTGTTCGACGGTGGACAGACGACAAGCCCGACCTGGGG
GGGGTGTGGTAGGAATTCCGGAAGTACGTACTTGCATGACTACTGCACTC
GTCGTTGTTTTTTTTTTTTGTACTCGTCCGCGCGGTTTTCAATACATTCG
AGCCACAGTCCTGGTGTTCAGATCGCCGGGGCGAGCGAGACCGGGCTGTA
CTGTACACTAGTCGAGTACGAGTACTGCTACAGTACAGTACTGTGTACTG
GACTGGACTGGAGTGACCGAGTACAAGTACTTGTGCACTGTACTCGAGTA
CTTTGGGGTTGCCTCAAGTGCTGTACTGCACTGTACTGTACCGTACTGTG
CAGTATACTGTGCGAGTGCAAGTACTTGTGCACTGTCCTCGAGCACTTTG
GGGTTGCCTCAAGTACTGTACTGTACCGTACTGTGCAGTATATACGGGAA
GTGCACTGTCAAGCATGGCAACAAACTACTTCCAAGGGGTGGTACGCACC
GCAGTACTTCGAAGCAGTGGTGGTACCTGCTTCCAAGTAATTCCAAGCAC
TGGTACTACATACAGTACCTACTAGTACGGTACTTCTATGCAGTGGCACT
ACCTACTAACAAATATTTCAAAGCGGTGGTACAGAGTACCTCCAAGCAGC
GGTACTACCTGCTCCCAAGTACCAAGTACTTCCAAACGGCGGTACAAAGT
ACTTCCAAGCAGTGGCACACCTGCTTCCAAGTACTTCCAAGCGGCGGTGC
AAACTACGGTACTTCCAAGCAGTGGTACTACCTGCTTCCAAGTAGTTCCA
AGCGGCGGTACAGGCTACGGTACATTCAAGCAGTGACGCAAGAACTGCTT
ACAAGTACTTCCAAGCGGTACAAACTGTACTTCCAAGACGTGGTGCAACC
TACTAGCAAGTACTTCCACGGGGCGGTACAAAATACGGTACTTCCAAGCA
GTGGTACTACCTACTAGCAAGTACTTCCAGGCGGTGGTACAGAGTACTTC
CAAGCACTACTAGTACCTGCTTCCAGTACTTCCAAGCGGTGGTACAAACT
GCAGTACTTCCAAGCAGTGGCACTACCTACTAGCAAGTACTTCCAAGCAG
TGGTACAGACTACGGTACTTCCAAGCTACTAGGTACCTACGTAACAAGTA
CTTCCAAGCAGTGGTAAGAAGCCAAGTACTTGCAGTACCTACTCCCAGGC
TGCGGCCAAAGCACATCAAACCGAGCAGTGGCCGGGGCTACCTATTCCGG
GGCCTCACGCACAATACGTAGCACAGCGGCTGCGACTCGCCCAGATTGAT
TCTCCAGGGACCAGATGGATTTTCGCCGCAACCGCGGGCACTCGCACCGT
GCACCGCCCCGCCCGACCGCGCCGCGCCACGCCACACCAGGGTTGGCACT
TAACCCCTAAGTAAGTGGTGCCCTTATAGGCCCCTAGTTAGAGGTAGCTA
GGGTAGCTAGACCTAAAATTAGGACAAATATATATGTACTCACGTGGTGC
TTGCCGTAGTCCCGAGACCATTGACCCCGCGCCTCGTTCAACTCTAAGTT
AATTTTGCTCCGTCTCGACCGAGGCGCGTGGTCAATGGTCTCGGGCCTAC
TTCAAGCACAACGTGAGTATATATATATATGTATTAGCCTCCAAGTGCCA
ACCCTGCGCCGCACAGCATGCGCGAGACGGGCGGCGGCGGCCTGCGCGGC
TCCCAGGCCTACGCCTACTCCTTCCGCGCGGAAAGCAGCGGCAGCGGCGG
CGGCCCCTCGCTCTCGGTCTTTGTGGAGCGCCACCTGGGACAGGCGGGTT
CGCCCTATGACATCCTCTTTTGGGTCACGATGGGTGGTGGTTACGGGCGC
CCGGGGAGAACGGATATAGAGGCTCTCCATGAGGAGCACGAGGTAAGGCA
GGGGGATTGGTGAAGGAGGGGCGCAGGGGCAGGGTTGGCACTTACACAGT
AGAGGTTATTTAGGGCCTGATTAGCCCTTATTTTAGGTCTAATTCCCCCT
AATTACCTCTAATCGGTTTTCGTGGAGCGACACCTGGGAGAGTCGGGTTC
GCCCTATGAAATCCTCTTTTGGGTCAAGATGGGCGGTCATTACACGGGGA
GAACGGATAGAGGCTCTCCATGAGGAGCACGAGGTATGTCCGGGGGCATT
GGTGAAGGGGGGGGCAAGGGCAGGGTTGGCACTCAGGGGTTAATTAGGGC
CTAATTAGCCCTCATTTTAGGTCTAATACCCCTAGTTGCCTCTGATTGAG
GGCCTAAAAGGGCACAACTTAGGGGTTAAGTGCCAACCCTGGGCAGGGGG
TAGCATCCCTTGTTCGCTCCTGCAGCGTTGTGGTGTACTTGGAAGTACTT
GAGTACCTGCAGTGGCCCGGGGGCGTACAGGAGGCGGGGGCAGGGGGGCG
TCCCTTGTTCACTCCTGCAGCGTTGTGGTGTACTTGGAAGTACTTGGAAG
TACTTGGGTACCTACAGTAGCCCGGGGGGGGGGGTCCTGAACCTAGATGG
CGTCCTCGGAAGGACTTCTAGAAGTTCTAGTACAGTAGAGTGTGCCGTGC
TCACATGAAAGTCGAGCCTTCGCGCCGCAGGGAGGACTGACCCGCCCCCC
CGTGCCGCTCGTCCTGGGCTTTTAGTCAGAGCCGGGCGGAGGCCTCCCCC
CTCACCGCCACGATCCACACCATGCGGGAGCCTGCCACCCTTAACCCTTT
TTACCGCTGGGAAATTGGACTCCCATTCTAAAACCCTATGATGATACGGA
CTCCAGGGATAAAAGGGTTAACCACAGTTGCAGCCACCACCACCACAATA
CAATGCCCCGAGGCCTTGTGGTGCCCCATGGCAAGCGACTGATGAGTAAT
TTACGTACTCTACGGCGCGTGGTCAATGGTCTCGGGACTACGGCAAGCAC
AACGTGAGTACATATATATATATATACTCTACACACACACCCCTTGCGCC
CCCCCCTCTCCTGCCTGCGCTTCCTTCTTCCCTGATGAGTACTTCGAAGT
AATGACGCACACACAACCCCCCTCGCGCCCCCCCATCTCCTGCCCCCGCT
TCCTCCCTTCCCCCTGAGGCAGTCCGTGGTCGACAACATCTTCAACTACA
GGCTCATCGAGGACCTCCGCGGCCCGCTCCGCGAACCCCTCAGCCTCCCT
ATGGCCGTCGGCTGGCTCCACGGCCTTCGCATGGAGGGCGTTTTGTCCCC
CCTACAAGCGGACGCCGCGGCCGGGGGCGGGCCCCGCTACACCCCCGCCG
CCGGGGCGGGAGCCGCAAACCGTCCTCGACACCATCACCGCGGCCCGGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3065760..3070709-

>mRNA_S-ischiensis_contig9.20769.1 ID=mRNA_S-ischiensis_contig9.20769.1|Name=mRNA_S-ischiensis_contig9.20769.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2280bp|location=Sequence derived from alignment at S-ischiensis_contig9:3065760..3070709- (Schizocladia ischiensis KU_0333)
AGCTCGCGCGGGCGTACACCTGCGGGGCGGGGTAGCATGGCGGACCTTGT
TTTATGGGGGTCCCTCCATACACCATTGATGGTGGAGAACCCGGAAGGCG
ACCGCCCCCCGTCCCCCCGGGGGCGGGGTGTTCTCGACTCGGCGGCGCTG
CTTCCAGCCATCCTCGTGTATTTGGGCCTGAAAGACGTGCTGTGCCACGC
GGCCGCAGTCAACAGGCACTGGCGCGACAGCTCCCCGGATGGGTTATGCC
AGATAGGAACCTGCCTGTACCCGTGCCCCTCACTGCACCGCTCCAGTGAC
TGCGACCAGGGGCTCCTCCCTTTCCACCTCTGGTTCGACAACCGCGCCCG
CGCCGGGGGGACCTTCTCCGGCGCCGAGCTGGCGCAGCTCCAAGTGGGCC
ACGACGGCCGCACCGCCGACGGCACGGATTCCCCCATCGAGGACCTCCTC
GTCGCGGACCCTGGACTGTGCCCCAACCTGGCGCGGGTGGTGGTTCCAAA
CATAATTACGGCCCGGGGGGCCCGCAGCCGGGATGTGGCCTCCGTGGCGC
GATCTGTGTGCCGAATGGCCTGCGACCGGCCCGGGCTTGTGGTGGACCCG
CCGCTTTCGCCAGGGATGTTGGCACTGGCGGGGGTGCGCGTGGCGGCCGC
GGCGGCGGATGCGCCGTCGCCAGTGGAGGTGATCGGAGCTCGCGCGGGCG
TACACCTGCGGGGCGGGGTAGCATGGCGGACCTTGTTTTATGGGGGTCCC
TCCATACACCATTGATGGTGGAGAACCCGGAAGGCGACCGCCCCCCGTCC
CCCCGGGGGCGGGGTGTTCTCGACTCGGCGGCGCTGCTTCCAGCCATCCT
CGTGTATTTGGGCCTGAAAGACGTGCTGTGCCACGCGGCCGCAGTCAACA
GGCACTGGCGCGACAGCTCCCCGGATGGGTTATGCCAGATAGGAACCTGC
CTGTACCCGTGCCCCTCACTGCACCGCTCCAGTGACTGCGACCAGGGGCT
CCTCCCTTTCCACCTCTGGTTCGACAACCGCGCCCGCGCCGGGGGGACCT
TCTCCGGCGCCGAGCTGGCGCAGCTCCAAGTGGGCCACGACGGCCGCACC
GCCGACGGCACGGATTCCCCCATCGAGGACCTCCTCGTCGCGGACCCTGG
ACTGTGCCCCAACCTGGCGCGGGTGGTGGTTCCAAACATAATTACGGCCC
GGGGGGCCCGCAGCCGGGATGTGGCCTCCGTGGCGCGATCTGTGTGCCGA
ATGGCCTGCGACCGGCCCGGGCTTGTGGTGGACCCGCCGCTTTCGCCAGG
GATGTTGGCACTGGCGGGGGTGCGCGTGGCGGCCGCGGCGGCGGATGCGC
CGTCGCCAGTGGAGGTGATCGGCATGCGCGAGACGGGCGGCGGCGGCCTG
CGCGGCTCCCAGGCCTACGCCTACTCCTTCCGCGCGGAAAGCAGCGGCAG
CGGCGGCGGCCCCTCGCTCTCGGTCTTTGTGGAGCGCCACCTGGGACAGG
CGGGTTCGCCCTATGACATCCTCTTTTGGGTCACGATGGGTGGTGGTTAC
GGGCGCCCGGGGAGAACGGATATAGAGGCTCTCCATGAGGAGCACGAGCA
TGCGCGAGACGGGCGGCGGCGGCCTGCGCGGCTCCCAGGCCTACGCCTAC
TCCTTCCGCGCGGAAAGCAGCGGCAGCGGCGGCGGCCCCTCGCTCTCGGT
CTTTGTGGAGCGCCACCTGGGACAGGCGGGTTCGCCCTATGACATCCTCT
TTTGGGTCACGATGGGTGGTGGTTACGGGCGCCCGGGGAGAACGGATATA
GAGGCTCTCCATGAGGAGCACGAGTCCGTGGTCGACAACATCTTCAACTA
CAGGCTCATCGAGGACCTCCGCGGCCCGCTCCGCGAACCCCTCAGCCTCC
CTATGGCCGTCGGCTGGCTCCACGGCCTTCGCATGGAGGGCGTTTTGTCC
CCCCTACAAGCGGACGCCGCGGCCGGGGGCGGGCCCCGCTACACCCCCGC
CGCCGGGGCGGGAGCCGCAAACCGTCCTCGACACCATCACCGCGGCCCGG
CCTCCGTGGTCGACAACATCTTCAACTACAGGCTCATCGAGGACCTCCGC
GGCCCGCTCCGCGAACCCCTCAGCCTCCCTATGGCCGTCGGCTGGCTCCA
CGGCCTTCGCATGGAGGGCGTTTTGTCCCCCCTACAAGCGGACGCCGCGG
CCGGGGGCGGGCCCCGCTACACCCCCGCCGCCGGGGCGGGAGCCGCAAAC
CGTCCTCGACACCATCACCGCGGCCCGGCC
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