mRNA_S-ischiensis_contig9.20766.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20766.1
Unique NamemRNA_S-ischiensis_contig9.20766.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3051097..3051991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size897
Cds size609
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817373.5340068-UTR-S-ischiensis_contig9:3051096..30513821622817373.5340068-UTR-S-ischiensis_contig9:3051096..3051382Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3051097..3051382 +
1695741064.3985155-UTR-S-ischiensis_contig9:3051096..30513821695741064.3985155-UTR-S-ischiensis_contig9:3051096..3051382Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3051097..3051382 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817373.5467405-CDS-S-ischiensis_contig9:3051382..30519911622817373.5467405-CDS-S-ischiensis_contig9:3051382..3051991Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3051383..3051991 +
1695741064.408912-CDS-S-ischiensis_contig9:3051382..30519911695741064.408912-CDS-S-ischiensis_contig9:3051382..3051991Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3051383..3051991 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20766.1prot_S-ischiensis_contig9.20766.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3051383..3051991 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20766.1

>prot_S-ischiensis_contig9.20766.1 ID=prot_S-ischiensis_contig9.20766.1|Name=mRNA_S-ischiensis_contig9.20766.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=203bp
MIASGSRNNTGRGAGHVTKDLSSGPSFSFPGEIGQQLERFDRDHYSRLAL
IRVLWSKSRRVLVRGYNMQCWEFKWITLLCWSTVGLFQRQRSLLIRRIGK
KDQECVPFESPFQQLLVAWVCPGDPPSVEAPPLVPETPTTMIANQIIPRV
QVGCFFIQECTFACSERCVYAAAIGATAPPATAAAASDAACGGGGVVVGG
GVG
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mRNA from alignment at S-ischiensis_contig9:3051097..3051991+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20766.1 ID=mRNA_S-ischiensis_contig9.20766.1|Name=mRNA_S-ischiensis_contig9.20766.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=895bp|location=Sequence derived from alignment at S-ischiensis_contig9:3051097..3051991+ (Schizocladia ischiensis KU_0333)
CTCAATCTCCCTCTCTCTCTCTCTCTCGCAGGAGAGAAAACATTCACGCG
TTGTGGTCACCATGGCGCCCAACCTGATTGTGGCAGCGAGCCAGAGCAAC
CGCTTGTACGAGACCGGTACTGAAGACCCTATAGTTATGCGAGGAAATTT
CTAACACTACTTGAGAAGTACTTGCGCTGGCTTGTAAAACACGATGGCCA
GAGTTCAGAGGTCCCGTCGCGCCAAGGGAGACGCCTGGTTTCAAGCACAG
CCCCCATTCATTGGGGGTGCTCTGTTGTGAAGGAGGATGATTGCCAGTGG
TAGCAGGAACAACACAGGGCGAGGTGCAGGCCACGTCACCAAAGACCTCA
GCAGTGGCCCTTCCTTTAGCTTTCCAGGGGAAATTGGTCAGCAGCTTGAG
CGCTTTGATCGAGATCACTACAGTAGACTCGCATTGATAAGGGTGCTGTG
GTCCAAAAGTAGGAGAGTTCTTGTTCGCGGCTACAATATGCAGTGTTGGG
AGTTCAAGTGGATTACCTTGCTTTGCTGGAGTACGGTGGGTCTGTTCCAA
AGACAACGATCCCTACTGATACGTAGGATAGGGAAAAAGGATCAGGAATG
TGTGCCTTTTGAATCGCCGTTTCAGCAACTTCTTGTTGCCTGGGTGTGTC
CCGGTGATCCGCCGAGTGTGGAGGCGCCGCCCCTCGTTCCTGAAACCCCA
ACGACGATGATTGCGAACCAGATCATCCCAAGGGTACAAGTAGGCTGTTT
CTTTATACAGGAATGTACATTTGCATGCTCTGAACGCTGCGTGTATGCGG
CTGCTATTGGTGCTACTGCCCCCCCTGCTACCGCCGCTGCTGCTTCTGAT
GCTGCTTGTGGTGGCGGTGGTGTCGTGGTGGGTGGCGGTGTCGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3051097..3051991+

>mRNA_S-ischiensis_contig9.20766.1 ID=mRNA_S-ischiensis_contig9.20766.1|Name=mRNA_S-ischiensis_contig9.20766.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1218bp|location=Sequence derived from alignment at S-ischiensis_contig9:3051097..3051991+ (Schizocladia ischiensis KU_0333)
ATGATTGCCAGTGGTAGCAGGAACAACACAGGGCGAGGTGCAGGCCACGT
CACCAAAGACCTCAGCAGTGGCCCTTCCTTTAGCTTTCCAGGGGAAATTG
GTCAGCAGCTTGAGCGCTTTGATCGAGATCACTACAGTAGACTCGCATTG
ATAAGGGTGCTGTGGTCCAAAAGTAGGAGAGTTCTTGTTCGCGGCTACAA
TATGCAGTGTTGGGAGTTCAAGTGGATTACCTTGCTTTGCTGGAGTACGG
TGGGTCTGTTCCAAAGACAACGATCCCTACTGATACGTAGGATAGGGAAA
AAGGATCAGGAATGTGTGCCTTTTGAATCGCCGTTTCAGCAACTTCTTGT
TGCCTGGGTGTGTCCCGGTGATCCGCCGAGTGTGGAGGCGCCGCCCCTCG
TTCCTGAAACCCCAACGACGATGATTGCGAACCAGATCATCCCAAGGGTA
CAAGTAGGCTGTTTCTTTATACAGGAATGTACATTTGCATGCTCTGAACG
CTGCGTGTATGCGGCTGCTATTGGTGCTACTGCCCCCCCTGCTACCGCCG
CTGCTGCTTCTGATGCTGCTTGTGGTGGCGGTGGTGTCGTGGTGGGTGGC
GGTGTCGGCATGATTGCCAGTGGTAGCAGGAACAACACAGGGCGAGGTGC
AGGCCACGTCACCAAAGACCTCAGCAGTGGCCCTTCCTTTAGCTTTCCAG
GGGAAATTGGTCAGCAGCTTGAGCGCTTTGATCGAGATCACTACAGTAGA
CTCGCATTGATAAGGGTGCTGTGGTCCAAAAGTAGGAGAGTTCTTGTTCG
CGGCTACAATATGCAGTGTTGGGAGTTCAAGTGGATTACCTTGCTTTGCT
GGAGTACGGTGGGTCTGTTCCAAAGACAACGATCCCTACTGATACGTAGG
ATAGGGAAAAAGGATCAGGAATGTGTGCCTTTTGAATCGCCGTTTCAGCA
ACTTCTTGTTGCCTGGGTGTGTCCCGGTGATCCGCCGAGTGTGGAGGCGC
CGCCCCTCGTTCCTGAAACCCCAACGACGATGATTGCGAACCAGATCATC
CCAAGGGTACAAGTAGGCTGTTTCTTTATACAGGAATGTACATTTGCATG
CTCTGAACGCTGCGTGTATGCGGCTGCTATTGGTGCTACTGCCCCCCCTG
CTACCGCCGCTGCTGCTTCTGATGCTGCTTGTGGTGGCGGTGGTGTCGTG
GTGGGTGGCGGTGTCGGC
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