mRNA_S-ischiensis_contig9.20759.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20759.1
Unique NamemRNA_S-ischiensis_contig9.20759.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20759.1 vs. uniprot
Match: A0A835YQQ8_9STRA (SH2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQQ8_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 9.680e-11
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 QHALIAYENGHFSDEKGRLGLFATLEDFLRSKISSLARHPLRFRRAEGSCRFVLVED 171
            QH LI YE GH++D++GRLG F TLE+ L+SK++ LA  PLRFRR  GS R+  V D
Sbjct:  382 QHVLINYEQGHYTDQQGRLGRFPTLEELLQSKVAQLATRPLRFRRVHGSGRYDRVTD 438
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BLAST of mRNA_S-ischiensis_contig9.20759.1 vs. uniprot
Match: A0A6H5JYW2_9PHAE (SH2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYW2_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.610e-10
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 QHALIAYENGHFSDEKGRLGLFATLEDFLRSKISSLARHPLRFRRAEGSCRFVLVE 168
            QHAL+ +E G FSDEKGRLG F+TLE+ L+SKIS++ARHPL FRR      +VL++
Sbjct:  449 QHALLMHEGGFFSDEKGRLGRFSTLEELLKSKISAIARHPLSFRRERNG--YVLID 502
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YQQ8_9STRA9.680e-1157.89SH2 domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6H5JYW2_9PHAE1.610e-1060.71SH2 domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2991119..2992645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue3.6e-10
Seed eggNOG ortholog2880.D7FGU6
KEGG koko:K07874
KEGG Pathwayko05134,map05134
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0084@1,KOG0084@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size813
Cds size810
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817368.6623044-CDS-S-ischiensis_contig9:2991118..29912701622817368.6623044-CDS-S-ischiensis_contig9:2991118..2991270Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2991119..2991270 +
1695741061.656594-CDS-S-ischiensis_contig9:2991118..29912701695741061.656594-CDS-S-ischiensis_contig9:2991118..2991270Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2991119..2991270 +
1622817368.677475-CDS-S-ischiensis_contig9:2991986..29926441622817368.677475-CDS-S-ischiensis_contig9:2991986..2992644Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2991987..2992644 +
1695741061.676799-CDS-S-ischiensis_contig9:2991986..29926441695741061.676799-CDS-S-ischiensis_contig9:2991986..2992644Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2991987..2992644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20759.1prot_S-ischiensis_contig9.20759.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2991119..2992644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20759.1

>prot_S-ischiensis_contig9.20759.1 ID=prot_S-ischiensis_contig9.20759.1|Name=mRNA_S-ischiensis_contig9.20759.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=270bp
QHALIAYENGHFSDEKGRLGLFATLEDFLRSKISSLARHPLRFRRAEGSC
RFVLVEDDDDQDGGGGAAGVASSHGGTHLSHASSFSSSTGTDLAHDFFTP
RATRAALPTAHKRPEEDKGGGRGRGGAGPEPATARRHTLGGSGGGSGWDA
AQRWSRGSGGGGGGGSSSSRGPGTGTGGVAMWSEAAAAAAEQQQQRRGLG
LGPGPFSASSSRRRPSSRASSSEGSRGRSRRASEAGADENDYNDNGQHYS
SYGGQERAEARGAGGPAWEV
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mRNA from alignment at S-ischiensis_contig9:2991119..2992645+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20759.1 ID=mRNA_S-ischiensis_contig9.20759.1|Name=mRNA_S-ischiensis_contig9.20759.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1527bp|location=Sequence derived from alignment at S-ischiensis_contig9:2991119..2992645+ (Schizocladia ischiensis KU_0333)
CAGCACGCTTTGATTGCCTACGAGAATGGTCACTTCAGCGACGAGAAGGG
GCGCCTGGGGCTGTTTGCCACCCTGGAAGACTTCCTGCGCTCGAAGATCA
GCTCCCTGGCGCGGCACCCCCTGCGTTTCCGGCGGGCAGAGGGATCCTGC
CGGTCAGTTCGTTGTCGGCGATTCATGCAAATTGCAACGAGACACTCGTA
CAATCGCACATGTGTGAGATTGAGTGTTTTCGTACTTGTGGTTTTCACAT
TTACGAATTGAGTGTTCTCGTATTAGAGCTCTGGTGGTTATCACAGTTCG
TTGTCACTTGGTGACCCCCAGCAAGGCGTGCACACACCCAAAGTCCATAG
TGCTCCATGTAGAGTACACGTGGGGCACGAGGGTTACCCGTGATCGTCGT
GAACCGCGAGACTGCGCCCCGAAGCTGCATGTCCGGGTTAACTTTGATCG
ATCTTCGACGTTTTCGAGGCTCTTCCCGGCTGCGCTCGTTCCCGTCACGC
CTCCAACCCTCGCTTGGGCCCGGCCCACCCCTTCCCCCTTTCTTGAGGAC
TATAATGAAGCTAGACCACGCTCCGTGGGCGTCAGTCGGGGATAATGAAT
ACTGCAGTACTGCACGAGCTATAAGGAAGGGCCACTGTTGAAGTCTTTAG
TGACGTGGCCTGCACTTCACCCTGTGTTGTTCCTGTAAATACTGCACGGT
AGCGGTGTTCCGCTGCTCTATGCAAACAGCTCCACGTGCCCAGGCCTATC
CTCCACTGCATAGTTCAAGTGCACGGTTCGCAATCCACGCGGCGAACCGC
CCCCCGACACCGTCCCTCCCCTCGCCGACCCCGGAGACCCGTCGCCCTTC
TCCTTGCCCGCTCCACAGGTTTGTCCTGGTAGAGGACGACGACGACCAAG
ACGGCGGCGGCGGCGCGGCCGGGGTGGCTTCCAGCCACGGAGGCACACAC
CTGAGCCACGCCTCCTCCTTCTCCTCCTCCACTGGCACCGACCTGGCCCA
CGACTTTTTCACCCCTCGCGCGACCAGGGCCGCTCTGCCCACGGCCCACA
AAAGGCCTGAAGAAGACAAGGGCGGCGGCCGAGGCCGAGGCGGGGCTGGC
CCAGAGCCTGCCACCGCGCGCAGGCACACCTTGGGAGGCAGTGGCGGTGG
CAGCGGCTGGGATGCTGCCCAGCGCTGGTCTCGTGGCAGTGGCGGCGGCG
GCGGCGGCGGCAGCAGCAGCAGCCGGGGGCCGGGGACAGGGACGGGTGGC
GTGGCAATGTGGTCAGAGGCTGCGGCGGCAGCGGCAGAGCAGCAGCAGCA
GCGGAGGGGTTTGGGCCTGGGGCCAGGCCCATTCTCGGCGTCCTCCTCGC
GCCGCCGCCCCTCCTCCCGGGCGTCATCGTCGGAGGGGAGCCGAGGGCGG
TCGAGGAGGGCATCGGAGGCCGGCGCCGACGAGAACGACTACAACGACAA
CGGCCAGCACTACTCCTCCTACGGGGGCCAGGAGAGGGCGGAAGCGAGGG
GGGCCGGCGGGCCGGCGTGGGAGGTGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2991119..2992645+

>mRNA_S-ischiensis_contig9.20759.1 ID=mRNA_S-ischiensis_contig9.20759.1|Name=mRNA_S-ischiensis_contig9.20759.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1620bp|location=Sequence derived from alignment at S-ischiensis_contig9:2991119..2992645+ (Schizocladia ischiensis KU_0333)
CAGCACGCTTTGATTGCCTACGAGAATGGTCACTTCAGCGACGAGAAGGG
GCGCCTGGGGCTGTTTGCCACCCTGGAAGACTTCCTGCGCTCGAAGATCA
GCTCCCTGGCGCGGCACCCCCTGCGTTTCCGGCGGGCAGAGGGATCCTGC
CGCAGCACGCTTTGATTGCCTACGAGAATGGTCACTTCAGCGACGAGAAG
GGGCGCCTGGGGCTGTTTGCCACCCTGGAAGACTTCCTGCGCTCGAAGAT
CAGCTCCCTGGCGCGGCACCCCCTGCGTTTCCGGCGGGCAGAGGGATCCT
GCCGGTTTGTCCTGGTAGAGGACGACGACGACCAAGACGGCGGCGGCGGC
GCGGCCGGGGTGGCTTCCAGCCACGGAGGCACACACCTGAGCCACGCCTC
CTCCTTCTCCTCCTCCACTGGCACCGACCTGGCCCACGACTTTTTCACCC
CTCGCGCGACCAGGGCCGCTCTGCCCACGGCCCACAAAAGGCCTGAAGAA
GACAAGGGCGGCGGCCGAGGCCGAGGCGGGGCTGGCCCAGAGCCTGCCAC
CGCGCGCAGGCACACCTTGGGAGGCAGTGGCGGTGGCAGCGGCTGGGATG
CTGCCCAGCGCTGGTCTCGTGGCAGTGGCGGCGGCGGCGGCGGCGGCAGC
AGCAGCAGCCGGGGGCCGGGGACAGGGACGGGTGGCGTGGCAATGTGGTC
AGAGGCTGCGGCGGCAGCGGCAGAGCAGCAGCAGCAGCGGAGGGGTTTGG
GCCTGGGGCCAGGCCCATTCTCGGCGTCCTCCTCGCGCCGCCGCCCCTCC
TCCCGGGCGTCATCGTCGGAGGGGAGCCGAGGGCGGTCGAGGAGGGCATC
GGAGGCCGGCGCCGACGAGAACGACTACAACGACAACGGCCAGCACTACT
CCTCCTACGGGGGCCAGGAGAGGGCGGAAGCGAGGGGGGCCGGCGGGCCG
GCGTGGGAGGTGGTTTGTCCTGGTAGAGGACGACGACGACCAAGACGGCG
GCGGCGGCGCGGCCGGGGTGGCTTCCAGCCACGGAGGCACACACCTGAGC
CACGCCTCCTCCTTCTCCTCCTCCACTGGCACCGACCTGGCCCACGACTT
TTTCACCCCTCGCGCGACCAGGGCCGCTCTGCCCACGGCCCACAAAAGGC
CTGAAGAAGACAAGGGCGGCGGCCGAGGCCGAGGCGGGGCTGGCCCAGAG
CCTGCCACCGCGCGCAGGCACACCTTGGGAGGCAGTGGCGGTGGCAGCGG
CTGGGATGCTGCCCAGCGCTGGTCTCGTGGCAGTGGCGGCGGCGGCGGCG
GCGGCAGCAGCAGCAGCCGGGGGCCGGGGACAGGGACGGGTGGCGTGGCA
ATGTGGTCAGAGGCTGCGGCGGCAGCGGCAGAGCAGCAGCAGCAGCGGAG
GGGTTTGGGCCTGGGGCCAGGCCCATTCTCGGCGTCCTCCTCGCGCCGCC
GCCCCTCCTCCCGGGCGTCATCGTCGGAGGGGAGCCGAGGGCGGTCGAGG
AGGGCATCGGAGGCCGGCGCCGACGAGAACGACTACAACGACAACGGCCA
GCACTACTCCTCCTACGGGGGCCAGGAGAGGGCGGAAGCGAGGGGGGCCG
GCGGGCCGGCGTGGGAGGTG
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