mRNA_S-ischiensis_contig9.20748.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20748.1
Unique NamemRNA_S-ischiensis_contig9.20748.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2933619..2933956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_002280.1
Exons1
Model size338
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20748.1prot_S-ischiensis_contig9.20748.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2933628..2933852 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817399.2131917-UTR-S-ischiensis_contig9:2933618..29336271622817399.2131917-UTR-S-ischiensis_contig9:2933618..2933627Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2933619..2933627 +
1695741085.087968-UTR-S-ischiensis_contig9:2933618..29336271695741085.087968-UTR-S-ischiensis_contig9:2933618..2933627Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2933619..2933627 +
1622817399.236324-UTR-S-ischiensis_contig9:2933852..29339561622817399.236324-UTR-S-ischiensis_contig9:2933852..2933956Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2933853..2933956 +
1695741085.1226404-UTR-S-ischiensis_contig9:2933852..29339561695741085.1226404-UTR-S-ischiensis_contig9:2933852..2933956Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2933853..2933956 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817399.2252688-CDS-S-ischiensis_contig9:2933627..29338521622817399.2252688-CDS-S-ischiensis_contig9:2933627..2933852Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2933628..2933852 +
1695741085.103932-CDS-S-ischiensis_contig9:2933627..29338521695741085.103932-CDS-S-ischiensis_contig9:2933627..2933852Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2933628..2933852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20748.1

>prot_S-ischiensis_contig9.20748.1 ID=prot_S-ischiensis_contig9.20748.1|Name=mRNA_S-ischiensis_contig9.20748.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=75bp
MAVAGLRCEACREGRLPGRRRTRSRCGFTVVFAATVVLGATGVGGQRYPQ
DALKCVSSLTAPEGLLICPEFRYA*
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mRNA from alignment at S-ischiensis_contig9:2933619..2933956+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20748.1 ID=mRNA_S-ischiensis_contig9.20748.1|Name=mRNA_S-ischiensis_contig9.20748.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=338bp|location=Sequence derived from alignment at S-ischiensis_contig9:2933619..2933956+ (Schizocladia ischiensis KU_0333)
GTTGGAGCCATGGCCGTTGCTGGACTGCGGTGCGAAGCATGTAGGGAGGG
AAGGTTACCGGGAAGACGACGAACGCGATCCAGATGCGGGTTCACCGTGG
TCTTTGCAGCCACTGTGGTGCTGGGGGCCACGGGAGTTGGGGGTCAGCGG
TATCCTCAAGATGCGCTGAAGTGCGTCTCATCCCTGACTGCCCCGGAGGG
CTTGCTTATCTGCCCAGAATTCAGGTATGCGTAAGGCAACGTGCTCGCAG
TCCATGTTAAGGCTCCCCAGTCCACGGGAGCATATATATGTATGGTGCAG
GGACCAGACCCGGCCCCAGCGCCGGCAGCCGATGCCAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2933619..2933956+

>mRNA_S-ischiensis_contig9.20748.1 ID=mRNA_S-ischiensis_contig9.20748.1|Name=mRNA_S-ischiensis_contig9.20748.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=450bp|location=Sequence derived from alignment at S-ischiensis_contig9:2933619..2933956+ (Schizocladia ischiensis KU_0333)
ATGGCCGTTGCTGGACTGCGGTGCGAAGCATGTAGGGAGGGAAGGTTACC
GGGAAGACGACGAACGCGATCCAGATGCGGGTTCACCGTGGTCTTTGCAG
CCACTGTGGTGCTGGGGGCCACGGGAGTTGGGGGTCAGCGGTATCCTCAA
GATGCGCTGAAGTGCGTCTCATCCCTGACTGCCCCGGAGGGCTTGCTTAT
CTGCCCAGAATTCAGGTATGCGTAAATGGCCGTTGCTGGACTGCGGTGCG
AAGCATGTAGGGAGGGAAGGTTACCGGGAAGACGACGAACGCGATCCAGA
TGCGGGTTCACCGTGGTCTTTGCAGCCACTGTGGTGCTGGGGGCCACGGG
AGTTGGGGGTCAGCGGTATCCTCAAGATGCGCTGAAGTGCGTCTCATCCC
TGACTGCCCCGGAGGGCTTGCTTATCTGCCCAGAATTCAGGTATGCGTAA
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