mRNA_S-ischiensis_contig9.20747.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20747.1
Unique NamemRNA_S-ischiensis_contig9.20747.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20747.1 vs. uniprot
Match: A0A6H5JKF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF0_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 4.750e-30
Identity = 95/237 (40.08%), Postives = 131/237 (55.27%), Query Frame = 1 
Query:  256 RMSYTVVTEAGENLTSLED-------------------VKDALAHRRYETIVGMANQSIFADLLEA----MQSHFLRPHLNMSIVSQDSSFSLDFAADALHASSLFCLSTVGEG----LRALEMARMRGTVTVSMREKTYRQALLPPEMCMVFDEHIRAAATILAQHPHPESAAAAAE-----------GTRPTLPDLSALRVRLLRAGSGGMGLAAAAGRGLLTNVVAGLGTVVGA 852
            RM Y+VVTE G  L   E                    +++ LA R  + ++ MANQSIFAD+LEA    +Q   LRP L +S++S+D  F LDF++  L A SLF +STVG G       LE+A ++GT +V  R +T  Q LL P++ MVFD+ +R +A +LA H   +  A   E            +  +L  + +LR  L RA + GMG AAAAG GLL NVVAG+G+ +GA
Sbjct:  130 RMRYSVVTEDGRRLGGDEREGAEPGLEGGGRGXXGGSVLREFLAGRVGDAMLRMANQSIFADMLEARFRAIQGRLLRPDLEISVISRDCEFFLDFSSGVLEAHSLFEVSTVGGGGPGAPETLEIAHIKGTASVDSRSQTCTQRLLSPQLRMVFDDAMRTSARVLALHSFMDRGAGMDEFGAGVGVGGLSSSSSSLRRIGSLRDSLARASTDGMGRAAAAGTGLLANVVAGVGSAIGA 366
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BLAST of mRNA_S-ischiensis_contig9.20747.1 vs. uniprot
Match: A0A7S3UTS6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTS6_HETAK)

HSP 1 Score: 72.4 bits (176), Expect = 2.450e-12
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:  256 RMSYTVVTEAGEN------LTSLEDVKDALAHRRYETIVGMANQSIFADLLEAMQSHFLRPHLNMSIVSQDSSFSLDFAADALHASSLF 504
            RM Y V+    +       +T+ EDV++ L   ++  +V  ANQS+FADLL A+Q  FLRP LN++I+S+DSSF LD   + + A S F
Sbjct:   35 RMKYEVIPAKSQGQEHDGPITNTEDVQEVLMLHKWSLVVRYANQSLFADLLSAIQDRFLRPDLNVAIISRDSSFKLDLKKETVEAKSEF 123
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKF0_9PHAE4.750e-3040.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3UTS6_HETAK2.450e-1242.70Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2930058..2933541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-09_002270.1
Exons4
Model size855
Cds size852
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20747.1prot_S-ischiensis_contig9.20747.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2930059..2933541 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817399.1370442-CDS-S-ischiensis_contig9:2930058..29303221622817399.1370442-CDS-S-ischiensis_contig9:2930058..2930322Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2930059..2930322 -
1695741085.0332336-CDS-S-ischiensis_contig9:2930058..29303221695741085.0332336-CDS-S-ischiensis_contig9:2930058..2930322Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2930059..2930322 -
1622817399.1526065-CDS-S-ischiensis_contig9:2931249..29314441622817399.1526065-CDS-S-ischiensis_contig9:2931249..2931444Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2931250..2931444 -
1695741085.0495834-CDS-S-ischiensis_contig9:2931249..29314441695741085.0495834-CDS-S-ischiensis_contig9:2931249..2931444Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2931250..2931444 -
1622817399.1647062-CDS-S-ischiensis_contig9:2932031..29321671622817399.1647062-CDS-S-ischiensis_contig9:2932031..2932167Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2932032..2932167 -
1695741085.0635643-CDS-S-ischiensis_contig9:2932031..29321671695741085.0635643-CDS-S-ischiensis_contig9:2932031..2932167Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2932032..2932167 -
1622817399.1807656-CDS-S-ischiensis_contig9:2933284..29335411622817399.1807656-CDS-S-ischiensis_contig9:2933284..2933541Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2933285..2933541 -
1695741085.0751085-CDS-S-ischiensis_contig9:2933284..29335411695741085.0751085-CDS-S-ischiensis_contig9:2933284..2933541Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2933285..2933541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20747.1

>prot_S-ischiensis_contig9.20747.1 ID=prot_S-ischiensis_contig9.20747.1|Name=mRNA_S-ischiensis_contig9.20747.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=284bp
VIVWFEPPTWLRRTTGRTGATGATTMAAGVWILPFPDPKISPGRKFRCCN
TGQLWRWPRKRNGTLKSLRLIWRTLQIPLCEKRSCRMSYTVVTEAGENLT
SLEDVKDALAHRRYETIVGMANQSIFADLLEAMQSHFLRPHLNMSIVSQD
SSFSLDFAADALHASSLFCLSTVGEGLRALEMARMRGTVTVSMREKTYRQ
ALLPPEMCMVFDEHIRAAATILAQHPHPESAAAAAEGTRPTLPDLSALRV
RLLRAGSGGMGLAAAAGRGLLTNVVAGLGTVVGA
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mRNA from alignment at S-ischiensis_contig9:2930058..2933541-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20747.1 ID=mRNA_S-ischiensis_contig9.20747.1|Name=mRNA_S-ischiensis_contig9.20747.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3484bp|location=Sequence derived from alignment at S-ischiensis_contig9:2930058..2933541- (Schizocladia ischiensis KU_0333)
GTCATAGTTTGGTTCGAACCGCCAACATGGCTCAGGAGGACGACTGGGAG
GACTGGAGCGACGGGAGCGACGACAATGGCGGCCGGAGTTTGGATCCTGC
CGTTCCCAGACCCGAAAATCAGTCCAGGGAGGAAGTTTCGTTGTTGCAAC
ACGGGACAGCTTTGGCGCTGGCCGAGGAAACGGAACGGTACTTTGAAGAG
CTTAAGGCTTATCTGGAGGACCTTGCAGATTCCTCTGTGCGAGAAGAGAT
CGTGCAGGTGAGGGACAACTGGTGTGGTCGTGGTCAAGGTCGCCTGCACC
TCCCCCGGCTGCCATGCCCGCATGCCCACCACTCCGTGGCACGGCGCTGC
TGTTGGCCAGGCTCGCCCACAGCTTGCAAGGAAAGCCCCCGAACCTTAAT
TTCCCTGCCTGAATGCCGTATGCGCAGAATTACGGAGACAGAAGCTTGAC
GACGTTCTGGGGTACTATGAGGCCAATGGGGACCTCGCAGAGTACACCAT
CGGCACCGAAGTGCACAGGTCTGGCCTCAGCTGCCCTGGGAGACAGGGCA
GGCACAGGTGTACTCTAGGAGGCGGTGGTTGCAGTTACGATTGTCCAGCA
GTCCTGCACGAACAGAGTAGCAAGAAAGAGGTTTGAACACATGGGGGCAG
TGGCGGCGAAGGGGTGGGAGCGGGGCGAGCACAGGACAGGCAACGGCCCA
GAGCTCATGCAGACAAGAAAGGTCCCCCGAGTGGCAAAAGAGGGAGTACA
AGGACGCAGAGGGCCACCTATATAGACCACTGGAAACACCATGAAGTGCT
CGGTCTGACCTGGCTGAACCCTCATCACCCGCCAACAAAAAGACCTGGAG
TGGCAACTCGGCTTCTACTGTAAGTATATGGGTCTTGCTTTAGAGTAGCA
AAGGCTGGGGCTCTTCAGTTTAGCATAGATGATGAGTGAAAGGATGTCTG
TGTTGAAGAACGGCGGAATGTGGCAGAAGCACACATCAAAGCGCATCGAA
TTCACACAGAGACCAGGGGGCGGCAAAAACACAAGCCGTGTGTGCAAGAA
TGCAAGAAACAAGAAGAGCCCCCGCTCGTTTGATGTGGCAGGGTCACCCA
GCTTTGAGGAGCCCGCTGACGCCGCCCCTGTTTCCGCAAACAACACACAG
GCTGGATGCAGCAGTTGTTTTCAACACACTCTGGTACTGACTGCTGCAAG
TACTTCAAAGCACTACTGTAGTGCAACGTACATGTCACCCAGGGCACAAG
TTCTTCCTTTTCCTGTCCAACACTCTCGCCCTCGCCCCCCCCTCCTCCCC
CCCCCCGCCCCTCCTCCTCCCCCTCCACCTCCCCCTCCCGCGCCCCCCCC
TCCTGTCCATTTGTGTTTTTACAGAATGTCATACACCGTGGTGACTGAGG
CCGGGGAAAATCTCACCAGTCTGGAGGATGTCAAGGATGCCTTGGCCCAC
AGGCGGTACGAGACTATTGTCGGCATGGCAAATCAGAGCATATTCGCGGA
TCTCCTGGAGGTGAGCCACCCCCGGGGTTTCAAGCAGAGCTGTGCAACGA
AGGCGTTTTTTAGTGTCTCTTCCACTACACGCAAGCACGCACTCGTGTCG
ACCACCCAACACGTATGAGTAAATCCGCCCGATGCTCACGCGGTAGCCCG
TTCGCCAGAACGAAAATCGGGAAGCTTTTGGCTGTCAGTATAAATTTCCC
GATTTTCGTAAGTTAGAGCTCTCTCTGGTGGTGCCGCTTACGCCGAGCGC
CCTGATGGCGATATTGGATGATTGAACGAACAAACCAACCAACGCACGAA
CCAAGTGACGGACGCCCCTTTTTTCTTCCCCCCCCCTCCTTACTCTTAGT
TCCTTGATGTGATAATCACTAATATAAGAACACTCAATTCTTAAATGGGA
CAACTACTACAGTACGAGTACGAGAACACTCAATCACTACAATTTATTTG
AGATCTGCGGCGAGTTCCAGGCCCCGTACCAAAAGGCTCGTACCGAAACG
GGACTCAACGAAGCCCTTGTTCCCCTCGCAGGGCAAGAAGAAAACAACAG
TATCAATTTATATGAATCACCACGCATGGGCGGACCGGCCAATGCAGGCC
ATGCAAAGCCACTTCCTGCGGCCGCACCTGAACATGTCCATCGTGAGCCA
GGACTCCAGCTTCTCCCTGGACTTTGCCGCGGACGCACTGCACGCCTCCT
CGCTGTTTTGTCTGTCCACCGTCGGGGAGGGTCTGCGGGCGCTGGAGATG
GCCAGGATGCGGGGCACCGTGACAGTGTCCATGCGGGAGAAGGTGTGGGC
GATGCGGGTCAGTGATGGAATATCCATCAGTAGATAGTCATCGGGCTCGA
CTCAGTTTGTGGGCGGCGTTACTAACTACTTGAAGTACTTGGATTTAGTG
TGGGTCAAACTATCGAATATCGACAATCGATAGATGTGTAGACCAGTATT
TTGAGCGGTAGATAAGCGACGAGTTCCAGGCCCCGTGCCAAAAGGCGCGT
CCGAAACGGGACTGAACGAAGCCCTTCTTCCCCTCGCATGGCAAAAACAA
AATAAAATAAATAGCAACTGTGTAGATCAGTATATATGTACTCATTGGTT
TGTGTTGCGACATAACCTTGCGTGCAATGCCGACAGCCCTAAGTCGAAAC
TTCGGGTTTGCCCTCCGGCAGGAGTAGCTATTTAGCCATGGACTCTCACG
TCCCAACTAGGCCAGTGCTGTGATAAATGCAGTAGGTTGATTTGCTTAGA
TATTCCATCACTGGTGTGGGCGGGTGCGTGGGTGGGTGCGTGTCTGTGTA
TGTTTGTGTTGAGGGTGAGGACGGTTGTGCGTGTGTGAACTAGTGCATGT
GTGTGCGCATGTGTGCGTGTATGTGTCGAGGGTGTTTGTGTGTGATTGTG
GACGGGTGCATGCGTTCGTGTGTGTGTGTGTGTGTGTGTGCACAAGTGTG
TGCAGGTGCGTGCTTGCTGATAGTTACACAGTTTCACCCCATCAACACAT
TGCACATGCTTGCGAGTACTCGAGTACGAGTACCTTTTTTGCACCGATGC
ACTTCGAAGTCCCGGCTATCAAACCCCTTTCAGGCACTTTCAAGTACATA
CCTACATACCAAGCACACTCCCTGCATCTAGTTCATTTCCCCTGCCCGCC
CGGCCCCCACCCCGGCCACCCCCCGGCCACCATCCCCCACACTAAAAAAA
AAACTGGGAAAACAAACAGACCTATAGACAGGCGCTCCTCCCACCAGAGA
TGTGCATGGTTTTCGACGAACACATACGGGCGGCCGCCACCATCCTCGCC
CAGCACCCGCACCCGGAGTCCGCGGCGGCGGCAGCGGAGGGGACGAGGCC
CACGCTCCCGGACCTATCAGCATTGCGGGTAAGGCTGCTCCGGGCGGGCA
GCGGCGGCATGGGCCTGGCGGCGGCGGCAGGCAGGGGCTTGCTAACCAAC
GTCGTGGCCGGCCTGGGGACGGTTGTTGGCGCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2930058..2933541-

>mRNA_S-ischiensis_contig9.20747.1 ID=mRNA_S-ischiensis_contig9.20747.1|Name=mRNA_S-ischiensis_contig9.20747.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1704bp|location=Sequence derived from alignment at S-ischiensis_contig9:2930058..2933541- (Schizocladia ischiensis KU_0333)
GTCATAGTTTGGTTCGAACCGCCAACATGGCTCAGGAGGACGACTGGGAG
GACTGGAGCGACGGGAGCGACGACAATGGCGGCCGGAGTTTGGATCCTGC
CGTTCCCAGACCCGAAAATCAGTCCAGGGAGGAAGTTTCGTTGTTGCAAC
ACGGGACAGCTTTGGCGCTGGCCGAGGAAACGGAACGGTACTTTGAAGAG
CTTAAGGCTTATCTGGAGGACCTTGCAGATTCCTCTGTGCGAGAAGAGAT
CGTGCAGGTCATAGTTTGGTTCGAACCGCCAACATGGCTCAGGAGGACGA
CTGGGAGGACTGGAGCGACGGGAGCGACGACAATGGCGGCCGGAGTTTGG
ATCCTGCCGTTCCCAGACCCGAAAATCAGTCCAGGGAGGAAGTTTCGTTG
TTGCAACACGGGACAGCTTTGGCGCTGGCCGAGGAAACGGAACGGTACTT
TGAAGAGCTTAAGGCTTATCTGGAGGACCTTGCAGATTCCTCTGTGCGAG
AAGAGATCGTGCAGAATGTCATACACCGTGGTGACTGAGGCCGGGGAAAA
TCTCACCAGTCTGGAGGATGTCAAGGATGCCTTGGCCCACAGGCGGTACG
AGACTATTGTCGGCATGGCAAATCAGAGCATATTCGCGGATCTCCTGGAG
AATGTCATACACCGTGGTGACTGAGGCCGGGGAAAATCTCACCAGTCTGG
AGGATGTCAAGGATGCCTTGGCCCACAGGCGGTACGAGACTATTGTCGGC
ATGGCAAATCAGAGCATATTCGCGGATCTCCTGGAGGCCATGCAAAGCCA
CTTCCTGCGGCCGCACCTGAACATGTCCATCGTGAGCCAGGACTCCAGCT
TCTCCCTGGACTTTGCCGCGGACGCACTGCACGCCTCCTCGCTGTTTTGT
CTGTCCACCGTCGGGGAGGGTCTGCGGGCGCTGGAGATGGCCAGGATGCG
GGGCACCGTGACAGTGTCCATGCGGGAGAAGGCCATGCAAAGCCACTTCC
TGCGGCCGCACCTGAACATGTCCATCGTGAGCCAGGACTCCAGCTTCTCC
CTGGACTTTGCCGCGGACGCACTGCACGCCTCCTCGCTGTTTTGTCTGTC
CACCGTCGGGGAGGGTCTGCGGGCGCTGGAGATGGCCAGGATGCGGGGCA
CCGTGACAGTGTCCATGCGGGAGAAGACCTATAGACAGGCGCTCCTCCCA
CCAGAGATGTGCATGGTTTTCGACGAACACATACGGGCGGCCGCCACCAT
CCTCGCCCAGCACCCGCACCCGGAGTCCGCGGCGGCGGCAGCGGAGGGGA
CGAGGCCCACGCTCCCGGACCTATCAGCATTGCGGGTAAGGCTGCTCCGG
GCGGGCAGCGGCGGCATGGGCCTGGCGGCGGCGGCAGGCAGGGGCTTGCT
AACCAACGTCGTGGCCGGCCTGGGGACGGTTGTTGGCGCCACCTATAGAC
AGGCGCTCCTCCCACCAGAGATGTGCATGGTTTTCGACGAACACATACGG
GCGGCCGCCACCATCCTCGCCCAGCACCCGCACCCGGAGTCCGCGGCGGC
GGCAGCGGAGGGGACGAGGCCCACGCTCCCGGACCTATCAGCATTGCGGG
TAAGGCTGCTCCGGGCGGGCAGCGGCGGCATGGGCCTGGCGGCGGCGGCA
GGCAGGGGCTTGCTAACCAACGTCGTGGCCGGCCTGGGGACGGTTGTTGG
CGCC
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