mRNA_S-ischiensis_contig9.20746.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20746.1
Unique NamemRNA_S-ischiensis_contig9.20746.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2928771..2929357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size587
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20746.1prot_S-ischiensis_contig9.20746.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2928790..2929128 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817373.3452575-UTR-S-ischiensis_contig9:2928770..29287891622817373.3452575-UTR-S-ischiensis_contig9:2928770..2928789Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2928771..2928789 +
1695741064.2880437-UTR-S-ischiensis_contig9:2928770..29287891695741064.2880437-UTR-S-ischiensis_contig9:2928770..2928789Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2928771..2928789 +
1622817373.3702812-UTR-S-ischiensis_contig9:2929128..29293571622817373.3702812-UTR-S-ischiensis_contig9:2929128..2929357Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2929129..2929357 +
1695741064.318028-UTR-S-ischiensis_contig9:2929128..29293571695741064.318028-UTR-S-ischiensis_contig9:2929128..2929357Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2929129..2929357 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817373.3583744-CDS-S-ischiensis_contig9:2928789..29291281622817373.3583744-CDS-S-ischiensis_contig9:2928789..2929128Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2928790..2929128 +
1695741064.3030493-CDS-S-ischiensis_contig9:2928789..29291281695741064.3030493-CDS-S-ischiensis_contig9:2928789..2929128Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2928790..2929128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20746.1

>prot_S-ischiensis_contig9.20746.1 ID=prot_S-ischiensis_contig9.20746.1|Name=mRNA_S-ischiensis_contig9.20746.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=113bp
MYGRPAGVRASGRQEHYCSPDNRFPVLLLSTGKASEVLSRRYLRSRDRAY
RDYYYCSTVVLQYHRSLSTTVALSYGTSTVRQSVLCTGTGMSGSCSGTKT
CTSTRVPMWLKV*
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mRNA from alignment at S-ischiensis_contig9:2928771..2929357+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20746.1 ID=mRNA_S-ischiensis_contig9.20746.1|Name=mRNA_S-ischiensis_contig9.20746.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=587bp|location=Sequence derived from alignment at S-ischiensis_contig9:2928771..2929357+ (Schizocladia ischiensis KU_0333)
TACACGCGCGTACTCAACCATGTATGGTAGGCCTGCCGGTGTTAGAGCGA
GCGGCCGGCAAGAGCACTACTGTAGTCCTGACAACCGATTTCCCGTGCTT
CTTCTCTCCACAGGAAAGGCAAGTGAAGTCCTATCGAGGCGTTACTTGCG
AAGTCGAGACCGGGCATATAGAGACTACTACTACTGTAGTACTGTAGTAC
TGCAGTACCACAGATCTCTAAGTACTACCGTAGCACTCTCATACGGCACG
AGTACTGTAAGACAGTCCGTATTGTGCACTGGCACGGGCATGAGCGGATC
ATGCTCGGGGACAAAAACGTGTACGAGTACTCGAGTACCCATGTGGTTGA
AAGTGTGAGGTAAAAAAGTACGAGTACTGCAATATGATTGTAGTGCTGTG
CGGCTTGTTGCGCCCGCCATAATGTCAAGGCCTTTGCAGGCCCCGCAAAA
AAGGCCGCCCAAGCAGAAAACGGCCACTCTCATCGTGGTGCCGGCACCCC
ATCACCAGAATCGCGCCCATCACCCGTGCGGTAGAGCCGGACCGGAGCCG
CCTccccCCCCCTCCCACCTCCACAATCCCCTCCAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2928771..2929357+

>mRNA_S-ischiensis_contig9.20746.1 ID=mRNA_S-ischiensis_contig9.20746.1|Name=mRNA_S-ischiensis_contig9.20746.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=678bp|location=Sequence derived from alignment at S-ischiensis_contig9:2928771..2929357+ (Schizocladia ischiensis KU_0333)
ATGTATGGTAGGCCTGCCGGTGTTAGAGCGAGCGGCCGGCAAGAGCACTA
CTGTAGTCCTGACAACCGATTTCCCGTGCTTCTTCTCTCCACAGGAAAGG
CAAGTGAAGTCCTATCGAGGCGTTACTTGCGAAGTCGAGACCGGGCATAT
AGAGACTACTACTACTGTAGTACTGTAGTACTGCAGTACCACAGATCTCT
AAGTACTACCGTAGCACTCTCATACGGCACGAGTACTGTAAGACAGTCCG
TATTGTGCACTGGCACGGGCATGAGCGGATCATGCTCGGGGACAAAAACG
TGTACGAGTACTCGAGTACCCATGTGGTTGAAAGTGTGAATGTATGGTAG
GCCTGCCGGTGTTAGAGCGAGCGGCCGGCAAGAGCACTACTGTAGTCCTG
ACAACCGATTTCCCGTGCTTCTTCTCTCCACAGGAAAGGCAAGTGAAGTC
CTATCGAGGCGTTACTTGCGAAGTCGAGACCGGGCATATAGAGACTACTA
CTACTGTAGTACTGTAGTACTGCAGTACCACAGATCTCTAAGTACTACCG
TAGCACTCTCATACGGCACGAGTACTGTAAGACAGTCCGTATTGTGCACT
GGCACGGGCATGAGCGGATCATGCTCGGGGACAAAAACGTGTACGAGTAC
TCGAGTACCCATGTGGTTGAAAGTGTGA
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