mRNA_S-ischiensis_contig9.20740.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20740.1
Unique NamemRNA_S-ischiensis_contig9.20740.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2894381..2894716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size338
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817373.254149-UTR-S-ischiensis_contig9:2894380..28943951622817373.254149-UTR-S-ischiensis_contig9:2894380..2894395Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2894381..2894395 +
1695741064.2410805-UTR-S-ischiensis_contig9:2894380..28943951695741064.2410805-UTR-S-ischiensis_contig9:2894380..2894395Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2894381..2894395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817373.2656596-CDS-S-ischiensis_contig9:2894395..28947161622817373.2656596-CDS-S-ischiensis_contig9:2894395..2894716Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2894396..2894716 +
1695741064.2514424-CDS-S-ischiensis_contig9:2894395..28947161695741064.2514424-CDS-S-ischiensis_contig9:2894395..2894716Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2894396..2894716 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20740.1prot_S-ischiensis_contig9.20740.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2894396..2894716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20740.1

>prot_S-ischiensis_contig9.20740.1 ID=prot_S-ischiensis_contig9.20740.1|Name=mRNA_S-ischiensis_contig9.20740.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=107bp
MGTLPAGRAPLGPQRLLSLLALSCLLSSGAGLPSGGARDALGSRASRRQA
KRGKQGRGELGKGDTRLDTRLWTHATSVFDPSATAGTIEGDAATNDSSLR
QLRAGAL
back to top

mRNA from alignment at S-ischiensis_contig9:2894381..2894716+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20740.1 ID=mRNA_S-ischiensis_contig9.20740.1|Name=mRNA_S-ischiensis_contig9.20740.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=336bp|location=Sequence derived from alignment at S-ischiensis_contig9:2894381..2894716+ (Schizocladia ischiensis KU_0333)
GAGATCCCGCACGAGATGGGCACCCTTCCAGCTGGCCGGGCGCCTTTGGG
GCCGCAGCGGCTGTTGTCTCTGCTTGCTCTGTCATGCTTGCTTTCTTCGG
GCGCTGGTTTGCCGAGCGGCGGAGCAAGGGATGCCTTGGGCAGCCGGGCG
AGCCGCAGGCAAGCGAAGCGGGGAAAGCAGGGCCGCGGCGAGCTTGGCAA
GGGGGACACGCGCCTGGACACGCGCCTGTGGACCCACGCTACCTCGGTCT
TTGATCCCTCGGCTACTGCCGGCACAATCGAGGGAGATGCGGCCACAAAC
GATTCCTCATTGAGGCAACTGCGAGCGGGGGCTTTG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:2894381..2894716+

>mRNA_S-ischiensis_contig9.20740.1 ID=mRNA_S-ischiensis_contig9.20740.1|Name=mRNA_S-ischiensis_contig9.20740.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=642bp|location=Sequence derived from alignment at S-ischiensis_contig9:2894381..2894716+ (Schizocladia ischiensis KU_0333)
ATGGGCACCCTTCCAGCTGGCCGGGCGCCTTTGGGGCCGCAGCGGCTGTT
GTCTCTGCTTGCTCTGTCATGCTTGCTTTCTTCGGGCGCTGGTTTGCCGA
GCGGCGGAGCAAGGGATGCCTTGGGCAGCCGGGCGAGCCGCAGGCAAGCG
AAGCGGGGAAAGCAGGGCCGCGGCGAGCTTGGCAAGGGGGACACGCGCCT
GGACACGCGCCTGTGGACCCACGCTACCTCGGTCTTTGATCCCTCGGCTA
CTGCCGGCACAATCGAGGGAGATGCGGCCACAAACGATTCCTCATTGAGG
CAACTGCGAGCGGGGGCTTTGATGGGCACCCTTCCAGCTGGCCGGGCGCC
TTTGGGGCCGCAGCGGCTGTTGTCTCTGCTTGCTCTGTCATGCTTGCTTT
CTTCGGGCGCTGGTTTGCCGAGCGGCGGAGCAAGGGATGCCTTGGGCAGC
CGGGCGAGCCGCAGGCAAGCGAAGCGGGGAAAGCAGGGCCGCGGCGAGCT
TGGCAAGGGGGACACGCGCCTGGACACGCGCCTGTGGACCCACGCTACCT
CGGTCTTTGATCCCTCGGCTACTGCCGGCACAATCGAGGGAGATGCGGCC
ACAAACGATTCCTCATTGAGGCAACTGCGAGCGGGGGCTTTG
back to top