mRNA_S-ischiensis_contig9.20727.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20727.1
Unique NamemRNA_S-ischiensis_contig9.20727.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20727.1 vs. uniprot
Match: UPI0018F51E97 (LOW QUALITY PROTEIN: ryanodine receptor 3 n=1 Tax=Tachyglossus aculeatus TaxID=9261 RepID=UPI0018F51E97)

HSP 1 Score: 52.8 bits (125), Expect = 1.290e-5
Identity = 28/76 (36.84%), Postives = 45/76 (59.21%), Query Frame = 2 
Query:   23 QQTRVAELGGAVMILRFVSDLSVSTRAQAVDAFRLGVAMLKGGNGRVQDLFFHVLRSSRQDASFFAAVTQHLRTCS 250
            QQ R+ E G A M+L+ +S         A++  +LG+A+L GGN RVQ      L+  +QDA FF +++  +++CS
Sbjct: 3637 QQARLHERGAAEMVLQMISASKGEMGPMAMETLKLGIAILNGGNVRVQQKMLAYLKE-KQDAGFFQSLSGLMQSCS 3711
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BLAST of mRNA_S-ischiensis_contig9.20727.1 vs. uniprot
Match: A0A6I8NPW3_ORNAN (Ryanodine receptor 3 n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=A0A6I8NPW3_ORNAN)

HSP 1 Score: 51.2 bits (121), Expect = 4.480e-5
Identity = 27/76 (35.53%), Postives = 44/76 (57.89%), Query Frame = 2 
Query:   23 QQTRVAELGGAVMILRFVSDLSVSTRAQAVDAFRLGVAMLKGGNGRVQDLFFHVLRSSRQDASFFAAVTQHLRTCS 250
            QQ R+ E G A M+L+ +          A++  +LG+A+L GGN RVQ      L+  +QDA FF +++  +++CS
Sbjct: 3601 QQARLHERGAAEMVLQMIGASKGEMGPMAMETLKLGIAILNGGNVRVQQKMLAYLKE-KQDAGFFQSLSGLMQSCS 3675
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BLAST of mRNA_S-ischiensis_contig9.20727.1 vs. uniprot
Match: F6XF06_ORNAN (Ryanodine receptor 3 n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=F6XF06_ORNAN)

HSP 1 Score: 51.2 bits (121), Expect = 4.480e-5
Identity = 27/76 (35.53%), Postives = 44/76 (57.89%), Query Frame = 2 
Query:   23 QQTRVAELGGAVMILRFVSDLSVSTRAQAVDAFRLGVAMLKGGNGRVQDLFFHVLRSSRQDASFFAAVTQHLRTCS 250
            QQ R+ E G A M+L+ +          A++  +LG+A+L GGN RVQ      L+  +QDA FF +++  +++CS
Sbjct: 3586 QQARLHERGAAEMVLQMIGASKGEMGPMAMETLKLGIAILNGGNVRVQQKMLAYLKE-KQDAGFFQSLSGLMQSCS 3660
[Close]
BLAST of mRNA_S-ischiensis_contig9.20727.1 vs. uniprot
Match: UPI0019D45AF1 (LOW QUALITY PROTEIN: ryanodine receptor 3 n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=UPI0019D45AF1)

HSP 1 Score: 51.2 bits (121), Expect = 4.480e-5
Identity = 27/76 (35.53%), Postives = 44/76 (57.89%), Query Frame = 2 
Query:   23 QQTRVAELGGAVMILRFVSDLSVSTRAQAVDAFRLGVAMLKGGNGRVQDLFFHVLRSSRQDASFFAAVTQHLRTCS 250
            QQ R+ E G A M+L+ +          A++  +LG+A+L GGN RVQ      L+  +QDA FF +++  +++CS
Sbjct: 3642 QQARLHERGAAEMVLQMIGASKGEMGPMAMETLKLGIAILNGGNVRVQQKMLAYLKE-KQDAGFFQSLSGLMQSCS 3716
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI0018F51E971.290e-536.84LOW QUALITY PROTEIN: ryanodine receptor 3 n=1 Tax=... [more]
A0A6I8NPW3_ORNAN4.480e-535.53Ryanodine receptor 3 n=1 Tax=Ornithorhynchus anati... [more]
F6XF06_ORNAN4.480e-535.53Ryanodine receptor 3 n=1 Tax=Ornithorhynchus anati... [more]
UPI0019D45AF14.480e-535.53LOW QUALITY PROTEIN: ryanodine receptor 3 n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2854801..2855571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size337
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817368.4081688-CDS-S-ischiensis_contig9:2854800..28549701622817368.4081688-CDS-S-ischiensis_contig9:2854800..2854970Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2854801..2854970 -
1695741061.50922-CDS-S-ischiensis_contig9:2854800..28549701695741061.50922-CDS-S-ischiensis_contig9:2854800..2854970Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2854801..2854970 -
1622817368.4214382-CDS-S-ischiensis_contig9:2855405..28555711622817368.4214382-CDS-S-ischiensis_contig9:2855405..2855571Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2855406..2855571 -
1695741061.5208497-CDS-S-ischiensis_contig9:2855405..28555711695741061.5208497-CDS-S-ischiensis_contig9:2855405..2855571Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2855406..2855571 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20727.1prot_S-ischiensis_contig9.20727.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2854801..2855571 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20727.1

>prot_S-ischiensis_contig9.20727.1 ID=prot_S-ischiensis_contig9.20727.1|Name=mRNA_S-ischiensis_contig9.20727.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=112bp
AGEAAGDTADAGGGARGGSDDPAVCERPERVHAGAGGGRLPSGGGDAQGG
QRQGAGPLLPRPAKLAPRRLLLRRCNTAPPHLLCGGRGGPPAGPSPRQVP
CAREETEALLCA
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mRNA from alignment at S-ischiensis_contig9:2854801..2855571-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20727.1 ID=mRNA_S-ischiensis_contig9.20727.1|Name=mRNA_S-ischiensis_contig9.20727.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=771bp|location=Sequence derived from alignment at S-ischiensis_contig9:2854801..2855571- (Schizocladia ischiensis KU_0333)
GCGGGAGAAGCGGCGGGAGATACAGCAGACGCGGGTGGCGGAGCTCGGGG
GGGCAGTGATGATCCTGCGGTTTGTGAGCGACCTGAGCGTGTCCACGCGG
GCGCAGGCGGTGGACGCCTTCCGTCTGGGGGTGGCGATGCTCAAGGGGGG
CAACGGCAGGGTGCAGGCGAGGGACAAGTAGCGGGAGGGGAGTACTCGTG
CTGTGCTGTGATGTGTTGCATTCCCGTGTAGTCTGGCTATGCGTCCGAAT
GCCATCACACCGACAGCAGCAGCCGCAGCGGGTGCAGGCGCAGGTTCTGA
TGCTGCTCTGCTGTGACGACAAGCAGCAAAAACAAAAAACGAGGACGCCA
ACAAAAGCAAGAGCAAGCAGCTACGAACGGCAACAATGACGACCGACCGT
GACACGAACGAACAAACCCACTTCTTGACAAACCAATCAACGGAAAACGA
CGAACGACGGACCAAAAGCAAAGCCAACGATCGATCGCCTGTCAAGCAAC
ACCCACCAGCAAACCAGCGCCACCACCACCACCACCACCACCGCGGCCGC
CGCCACCACCACCACCACCGCCACCACCCCGGCGTCGCATCGCCATCGCA
GGACCTCTTCTTCCACGTCCTGCGAAGCTCGCGCCAAGACGCCTCCTTCT
TCGCCGCTGTAACACAGCACCTCCGCACCTGCTCTGCGGCGGTCGCGGAG
GACCGCCGGCAGGCCCTTCGCCACGCCAAGTTCCGTGCGCGCGTGAAGAA
ACTGAGGCACTCCTTTGCGCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2854801..2855571-

>mRNA_S-ischiensis_contig9.20727.1 ID=mRNA_S-ischiensis_contig9.20727.1|Name=mRNA_S-ischiensis_contig9.20727.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=672bp|location=Sequence derived from alignment at S-ischiensis_contig9:2854801..2855571- (Schizocladia ischiensis KU_0333)
GCGGGAGAAGCGGCGGGAGATACAGCAGACGCGGGTGGCGGAGCTCGGGG
GGGCAGTGATGATCCTGCGGTTTGTGAGCGACCTGAGCGTGTCCACGCGG
GCGCAGGCGGTGGACGCCTTCCGTCTGGGGGTGGCGATGCTCAAGGGGGG
CAACGGCAGGGTGCAGGCGGGAGAAGCGGCGGGAGATACAGCAGACGCGG
GTGGCGGAGCTCGGGGGGGCAGTGATGATCCTGCGGTTTGTGAGCGACCT
GAGCGTGTCCACGCGGGCGCAGGCGGTGGACGCCTTCCGTCTGGGGGTGG
CGATGCTCAAGGGGGGCAACGGCAGGGTGCAGGACCTCTTCTTCCACGTC
CTGCGAAGCTCGCGCCAAGACGCCTCCTTCTTCGCCGCTGTAACACAGCA
CCTCCGCACCTGCTCTGCGGCGGTCGCGGAGGACCGCCGGCAGGCCCTTC
GCCACGCCAAGTTCCGTGCGCGCGTGAAGAAACTGAGGCACTCCTTTGCG
CAGACCTCTTCTTCCACGTCCTGCGAAGCTCGCGCCAAGACGCCTCCTTC
TTCGCCGCTGTAACACAGCACCTCCGCACCTGCTCTGCGGCGGTCGCGGA
GGACCGCCGGCAGGCCCTTCGCCACGCCAAGTTCCGTGCGCGCGTGAAGA
AACTGAGGCACTCCTTTGCGCA
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