mRNA_S-ischiensis_contig9.20714.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20714.1
Unique NamemRNA_S-ischiensis_contig9.20714.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20714.1 vs. uniprot
Match: A0A835YTW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTW3_9STRA)

HSP 1 Score: 130 bits (328), Expect = 9.410e-33
Identity = 58/114 (50.88%), Postives = 82/114 (71.93%), Query Frame = 2 
Query:   17 DAITKMFVAGVGGKPVVICVDNVHLMDTYSWRLLVELAKAEGTPCLFVLTSQAMDERRWNFALSNGMCMANDKPVRRKARHYFQLLGTPGVARKFELQGFTRQEIRQSLLALGV 358
            +A+ ++F + V G P V+C+DNVH M+ +SWR+++ LA+    PCLFVLTSQ MDERRW+FA  N   +  DKPVRR A+HYF+LL  PG   +FEL+  T  E+ ++L+A+GV
Sbjct: 1161 EALARIFESAVAGAPAVVCLDNVHFMNGHSWRVILRLAQCRRCPCLFVLTSQPMDERRWSFA-HNSPYITYDKPVRRNAQHYFRLLQIPGACARFELRNLTHAEVAEALMAMGV 1273
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BLAST of mRNA_S-ischiensis_contig9.20714.1 vs. uniprot
Match: D7FJ46_ECTSI (Guanylyl cyclase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ46_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 5.350e-5
Identity = 24/61 (39.34%), Postives = 37/61 (60.66%), Query Frame = 2 
Query:    2 LHMLHDAITKMFVAGVGGKPVVICVDNVHLMDTYSWRLLVELAKAEGTPCLFVLTSQAMDE 184
            LH++H  I+++    +G  P V  +DNVHLMD  SW+LL++L        L VLT+  ++E
Sbjct:  759 LHVVHSVISELATHALGNLPAVFILDNVHLMDKMSWKLLIQLLYCP-LRLLLVLTATPVEE 818
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YTW3_9STRA9.410e-3350.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FJ46_ECTSI5.350e-539.34Guanylyl cyclase n=1 Tax=Ectocarpus siliculosus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2764176..2765567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size383
Cds size375
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20714.1prot_S-ischiensis_contig9.20714.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2764176..2765560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817368.3432114-CDS-S-ischiensis_contig9:2764175..27643071622817368.3432114-CDS-S-ischiensis_contig9:2764175..2764307Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2764176..2764307 -
1695741061.4522812-CDS-S-ischiensis_contig9:2764175..27643071695741061.4522812-CDS-S-ischiensis_contig9:2764175..2764307Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2764176..2764307 -
1622817368.354756-CDS-S-ischiensis_contig9:2764908..27650941622817368.354756-CDS-S-ischiensis_contig9:2764908..2765094Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2764909..2765094 -
1695741061.4646573-CDS-S-ischiensis_contig9:2764908..27650941695741061.4646573-CDS-S-ischiensis_contig9:2764908..2765094Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2764909..2765094 -
1622817368.3657784-CDS-S-ischiensis_contig9:2765503..27655601622817368.3657784-CDS-S-ischiensis_contig9:2765503..2765560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2765504..2765560 -
1695741061.4834886-CDS-S-ischiensis_contig9:2765503..27655601695741061.4834886-CDS-S-ischiensis_contig9:2765503..2765560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2765504..2765560 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817368.3767633-UTR-S-ischiensis_contig9:2765560..27655671622817368.3767633-UTR-S-ischiensis_contig9:2765560..2765567Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2765561..2765567 -
1695741061.496177-UTR-S-ischiensis_contig9:2765560..27655671695741061.496177-UTR-S-ischiensis_contig9:2765560..2765567Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2765561..2765567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20714.1

>prot_S-ischiensis_contig9.20714.1 ID=prot_S-ischiensis_contig9.20714.1|Name=mRNA_S-ischiensis_contig9.20714.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=125bp
MLHDAITKMFVAGVGGKPVVICVDNVHLMDTYSWRLLVELAKAEGTPCLF
VLTSQAMDERRWNFALSNGMCMANDKPVRRKARHYFQLLGTPGVARKFEL
QGFTRQEIRQSLLALGVAGDERRNS
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mRNA from alignment at S-ischiensis_contig9:2764176..2765567-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20714.1 ID=mRNA_S-ischiensis_contig9.20714.1|Name=mRNA_S-ischiensis_contig9.20714.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1392bp|location=Sequence derived from alignment at S-ischiensis_contig9:2764176..2765567- (Schizocladia ischiensis KU_0333)
GCTGCACATGCTGCACGACGCCATCACCAAGATGTTTGTGGCGGGGGTGG
GCGGGAAGCCGGTGGTGAGCGATGGGCGGGCTGTGGGCCCAAGCGGGCGG
GGGCGGGCAGGGGCGGGGGGACGCCGCCTTGTGTGTGTGTGTGTGTGTGC
GTGTGTGTGTGCGTGTGTGGTTGTGGTTATGTGTTATGTGTGCGTGTGCG
TGCGGCGACTGCCTCGCTCTACGAGTACAATTATTGTGCGCATACTCGAG
TACGAGTAGCTATATGCAGCGCGTCCTGCGTAGTAGACATCCCAACCACC
AAGTGCCCGGTCCGGCCGCCCCCCCCACCCCCTTCCCCCCCCCCCACCAG
CACAACGCGAGTACCGTGTAGTATACGAGTATTGTGCACATAATCGAGTG
GTATGTACAGCGAGTCCTGCGTAGCAGACGTCCCAACCACCAAGTGCCCG
CTCCGGCCATCCCCCCCCCCCAGGTGATCTGCGTGGACAATGTCCACCTC
ATGGACACCTACAGCTGGCGCCTGCTGGTGGAGCTGGCCAAGGCAGAGGG
CACCCCCTGCCTGTTTGTGCTCACCTCACAGGCCATGGACGAGCGCCGAT
GGAACTTCGCCCTCAGCAACGGCATGTGCATGGCCAACGACAAGCCCGTG
CGGCGGAAGGTACGGGTATGATCAGTGCTGTACTGTAGAGCTCGATGATT
CATATATATTGGGCTTCTGGTGAGGTCCCACCTTAGGTTGTTGGAATGGG
GCCCGGAGCTCGCATGCCATCAAAATAGTTAAAAAATTGTAGCGAGGTAC
AATCGCACGTGTTTGAGATTGAGCGTTCTCGTAGTAGCGGTTATCCTGAG
AGCTCGATGTCAATGCGCCCCTCGCGGCCGAGTACGAGTGCTGCGTACAG
TGCAGTGCAGTAGGGTGCTTTCCGTGGTGAGGCAGCACACCAACTTGCCC
GGGCGCTTCAACTGTTTTGTAGTGGGGGCACGTCCCGTAGAGTTGTGAAC
TGGCAAGGCCTACCAGTTTTACTGTTAACCGGTCGTGTGACAATGCACTT
GAATCATGAGTGCATATATACTGTATGTACTTCCGGAGTGCTATGTAGTA
CTTCGAAGTATATATACTTGTATGTGTACTCGAGTATTCAAGTAAAAGTG
TGCTGTACTCTCCATCGATCGTCGTGCACGACACGTGACCCCCGCCCGCC
CACGCCCGCCCACGCACGCACGCACACACGCACACGCGCCCACACGCCCA
CCCACCGCAGGCCCGGCACTACTTCCAGCTGCTGGGCACGCCGGGCGTGG
CCCGCAAATTTGAGCTGCAGGGCTTCACCCGTCAGGAGATTCGACAGTCC
TTGCTCGCATTGGGCGTGGCGGGGGACGAGCGCAGGAACAGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2764176..2765567-

>mRNA_S-ischiensis_contig9.20714.1 ID=mRNA_S-ischiensis_contig9.20714.1|Name=mRNA_S-ischiensis_contig9.20714.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=750bp|location=Sequence derived from alignment at S-ischiensis_contig9:2764176..2765567- (Schizocladia ischiensis KU_0333)
ATGCTGCACGACGCCATCACCAAGATGTTTGTGGCGGGGGTGGGCGGGAA
GCCGGTGATGCTGCACGACGCCATCACCAAGATGTTTGTGGCGGGGGTGG
GCGGGAAGCCGGTGGTGATCTGCGTGGACAATGTCCACCTCATGGACACC
TACAGCTGGCGCCTGCTGGTGGAGCTGGCCAAGGCAGAGGGCACCCCCTG
CCTGTTTGTGCTCACCTCACAGGCCATGGACGAGCGCCGATGGAACTTCG
CCCTCAGCAACGGCATGTGCATGGCCAACGACAAGCCCGTGCGGCGGAAG
GTGATCTGCGTGGACAATGTCCACCTCATGGACACCTACAGCTGGCGCCT
GCTGGTGGAGCTGGCCAAGGCAGAGGGCACCCCCTGCCTGTTTGTGCTCA
CCTCACAGGCCATGGACGAGCGCCGATGGAACTTCGCCCTCAGCAACGGC
ATGTGCATGGCCAACGACAAGCCCGTGCGGCGGAAGGCCCGGCACTACTT
CCAGCTGCTGGGCACGCCGGGCGTGGCCCGCAAATTTGAGCTGCAGGGCT
TCACCCGTCAGGAGATTCGACAGTCCTTGCTCGCATTGGGCGTGGCGGGG
GACGAGCGCAGGAACAGCGCCCGGCACTACTTCCAGCTGCTGGGCACGCC
GGGCGTGGCCCGCAAATTTGAGCTGCAGGGCTTCACCCGTCAGGAGATTC
GACAGTCCTTGCTCGCATTGGGCGTGGCGGGGGACGAGCGCAGGAACAGC
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