mRNA_S-ischiensis_contig9.20706.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20706.1
Unique NamemRNA_S-ischiensis_contig9.20706.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20706.1 vs. uniprot
Match: A0A2T7P2D1_POMCA (Uncharacterized protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7P2D1_POMCA)

HSP 1 Score: 55.1 bits (131), Expect = 3.650e-6
Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:  190 RRKTNRCQVCDGCKKSRRPDCGTCKACKDKPKSGGANKLKQQCIEKRCR 336
            RR+  RC+ C+GC      DCG C  C+D+PK GG N LKQ CI++RCR
Sbjct:  818 RRRKGRCKECEGCLAV---DCGKCMYCRDRPKFGGQNILKQACIKRRCR 863
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BLAST of mRNA_S-ischiensis_contig9.20706.1 vs. uniprot
Match: UPI000D728FCD (uncharacterized protein LOC112567768 isoform X1 n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D728FCD)

HSP 1 Score: 55.1 bits (131), Expect = 3.670e-6
Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:  190 RRKTNRCQVCDGCKKSRRPDCGTCKACKDKPKSGGANKLKQQCIEKRCR 336
            RR+  RC+ C+GC      DCG C  C+D+PK GG N LKQ CI++RCR
Sbjct:  679 RRRKGRCKECEGCLAV---DCGKCMYCRDRPKFGGQNILKQACIKRRCR 724
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2T7P2D1_POMCA3.650e-653.06Uncharacterized protein n=1 Tax=Pomacea canalicula... [more]
UPI000D728FCD3.670e-653.06uncharacterized protein LOC112567768 isoform X1 n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2722877..2724948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size391
Cds size390
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20706.1prot_S-ischiensis_contig9.20706.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2722877..2724948 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817368.15997-CDS-S-ischiensis_contig9:2722876..27229781622817368.15997-CDS-S-ischiensis_contig9:2722876..2722978Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2722877..2722978 +
1695741061.3403263-CDS-S-ischiensis_contig9:2722876..27229781695741061.3403263-CDS-S-ischiensis_contig9:2722876..2722978Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2722877..2722978 +
1622817368.1734803-CDS-S-ischiensis_contig9:2723755..27239161622817368.1734803-CDS-S-ischiensis_contig9:2723755..2723916Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2723756..2723916 +
1695741061.357267-CDS-S-ischiensis_contig9:2723755..27239161695741061.357267-CDS-S-ischiensis_contig9:2723755..2723916Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2723756..2723916 +
1622817368.184869-CDS-S-ischiensis_contig9:2724821..27249481622817368.184869-CDS-S-ischiensis_contig9:2724821..2724948Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2724822..2724948 +
1695741061.3666852-CDS-S-ischiensis_contig9:2724821..27249481695741061.3666852-CDS-S-ischiensis_contig9:2724821..2724948Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2724822..2724948 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20706.1

>prot_S-ischiensis_contig9.20706.1 ID=prot_S-ischiensis_contig9.20706.1|Name=mRNA_S-ischiensis_contig9.20706.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=130bp
ADGGVQVRPEDLERRHKREGELRRGLANAVLDFKETRETARADGGAEGGA
GDAGANGKGKGKPRRKTNRCQVCDGCKKSRRPDCGTCKACKDKPKSGGAN
KLKQQCIEKRCRNAGDEVDWDWVVARARAE
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mRNA from alignment at S-ischiensis_contig9:2722877..2724948+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20706.1 ID=mRNA_S-ischiensis_contig9.20706.1|Name=mRNA_S-ischiensis_contig9.20706.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2072bp|location=Sequence derived from alignment at S-ischiensis_contig9:2722877..2724948+ (Schizocladia ischiensis KU_0333)
GCGGATGGAGGCGTCCAGGTGCGTCCGGAGGACTTGGAGAGGCGGCACAA
GCGGGAGGGAGAGCTCCGCAGGGGGCTGGCGAACGCCGTGCTGGATTTTA
AGGTGGGGGCCGAGATGAGAGGACCTGCGTAAACCCTTACGTAGAGGACA
AGAGTGCTGTGGACTGCTTACACTGTAGGGGTTTCGCGGGACTGTGGAGG
ACGGCGGTACTGTGGAGTACGTTGTGGGTTTTTTTGCGGTGTTGTAGGTC
AATGGTCTCGGGACTACCTATGGCAAGCACAACGCGAGTACATATATATA
TGTATATGTATATATGTATATGTGTGTGTGTCCTCACGTGGTGCTTGCCG
TAGCACCGAGACCATTGACCACGCGCCTCGTTCGAGATGGAGCATATATA
TATGTACAGTAGTGTGGAGGACGACTGCACCTTGCTGTAAACTATGTAGT
CTACATGGTTGGCGTTAAGGACGATGGTACACTACACTATAGGAGTTTTC
GCGGCAGTGTGGGACCCGTGCAGGTGTACTCGTAGTCAGCAGTCCTCAAA
GGGTTGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGTGGGGGGGGGGTAG
CCGAAGGGGAAAAGGAGAATGAGGGGGGACAGGTGGAGCAGGCACCAGCG
GGGAGGAGGAGGGGGGGGCAGGGGAGGGGATGGGAAAAGGAGGGCGGGGG
GGGTGTGGGGGGTGTTGGGGGGGGGTCGATGATGGGATGACACAGGGGCG
CCCTTCTCTTTGCTTCTCATGTTCTGACCCCCGCGCCCACCCCTTGCCCT
TGCCCTTTCCCGCGGCAATGGGCTTGCCTCCGCCTCAATACCTACGAATC
GATTCGATCCCCCGCCCCTCCTCGTGCAGGAGACGCGCGAAACGGCGAGG
GCAGACGGCGGGGCGGAAGGGGGCGCTGGAGACGCGGGCGCCAACGGCAA
GGGCAAGGGCAAGCCTCGCCGGAAGACAAACCGCTGCCAAGTGTGCGATG
GCTGCAAGAAGTCGCGCCGGCCCGACTGCGGCACTTGCAAGTGAGTGCCT
GCCTGTGTGCGTGTGCATGTGTCTGCGTGCGTGTGTGTATGTACTTCAGA
GCATGTCTGTGTTTGTATGCCTACGTGCGTGTGGTGTGTGTGTGTGTGTG
TGTGCGTGTACGTGTCTTGTATACGTCAGCGTGTGCGTGCGTACGGGTGC
ATGCGTGTGCGCACGCGTGTGTGCATGCGATCATGCGTCAGTGCATGCGT
GCACGCGTGCCAGCTTGACGTGCGCGGTTCGCATGCGTGTGTACTCGAGT
ATATGTGTCTGTGATAGCACGGGTCGCTTCCGGCAAGTCCATAGGTCCCG
CGGATCTAGCGCCGCGTTGTCATGCGATTGACGTCCAGGCCGTGTTCGCT
GCGGACCTACTGTACCGTGATCGTCGGAGAGATCTTGCCCCCCTATGCTA
ATTTTCGGGAGAATATTTCTCGCCGAATACTGGTCGGATTCGCACAGGAA
AAGTCTGAAAACCTCCCTCAGGACCTGGGGGAACTTTTCCGAGAGTTTTC
AGGACAATTCAGGACCTGTCCGGCCAGAAATGTTCCCCCGAAATTTGTCC
CGTGGGGGCAGAATCTCCCCGACGATTACGGTACTGTAAGGTGCATTGAC
AGTTGCTTGCAGTTACTTAGTGCTTGAGCACCGAGTGCCTTCCGCTGCGT
AGGTGTACATGTGTTCTTGTGCGCCCTGCAGTAGGCTTTCTCGAGTACTC
GACATTCGTAGCTGCCTGGCCAGGTCGCGGCGGGTAAATGGCCCGCAACC
CACCTATCCTGCCCCATGCTCATGCTCGCTCGCATACCCCCCCCCCCCCT
CCCCCCCCTTGCCGCCCCCTTCCTCCTTCCCTACTCCCACCTGCTTTCCT
CCCCCCTCCTGCCGCCGCCCCCGTCTTGCCTGCTTGCATACGCAGGGCGT
GCAAGGACAAGCCGAAGTCCGGGGGGGCCAACAAATTGAAGCAGCAGTGC
ATCGAGAAGAGGTGCAGGAATGCGGGAGATGAGGTGGATTGGGACTGGGT
GGTTGCGCGGGCAAGGGCAGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2722877..2724948+

>mRNA_S-ischiensis_contig9.20706.1 ID=mRNA_S-ischiensis_contig9.20706.1|Name=mRNA_S-ischiensis_contig9.20706.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=780bp|location=Sequence derived from alignment at S-ischiensis_contig9:2722877..2724948+ (Schizocladia ischiensis KU_0333)
GCGGATGGAGGCGTCCAGGTGCGTCCGGAGGACTTGGAGAGGCGGCACAA
GCGGGAGGGAGAGCTCCGCAGGGGGCTGGCGAACGCCGTGCTGGATTTTA
AGGCGGATGGAGGCGTCCAGGTGCGTCCGGAGGACTTGGAGAGGCGGCAC
AAGCGGGAGGGAGAGCTCCGCAGGGGGCTGGCGAACGCCGTGCTGGATTT
TAAGGAGACGCGCGAAACGGCGAGGGCAGACGGCGGGGCGGAAGGGGGCG
CTGGAGACGCGGGCGCCAACGGCAAGGGCAAGGGCAAGCCTCGCCGGAAG
ACAAACCGCTGCCAAGTGTGCGATGGCTGCAAGAAGTCGCGCCGGCCCGA
CTGCGGCACTTGCAAGAGACGCGCGAAACGGCGAGGGCAGACGGCGGGGC
GGAAGGGGGCGCTGGAGACGCGGGCGCCAACGGCAAGGGCAAGGGCAAGC
CTCGCCGGAAGACAAACCGCTGCCAAGTGTGCGATGGCTGCAAGAAGTCG
CGCCGGCCCGACTGCGGCACTTGCAAGGCGTGCAAGGACAAGCCGAAGTC
CGGGGGGGCCAACAAATTGAAGCAGCAGTGCATCGAGAAGAGGTGCAGGA
ATGCGGGAGATGAGGTGGATTGGGACTGGGTGGTTGCGCGGGCAAGGGCA
GAGGGCGTGCAAGGACAAGCCGAAGTCCGGGGGGGCCAACAAATTGAAGC
AGCAGTGCATCGAGAAGAGGTGCAGGAATGCGGGAGATGAGGTGGATTGG
GACTGGGTGGTTGCGCGGGCAAGGGCAGAG
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