mRNA_S-ischiensis_contig9.20705.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig9.20705.1 vs. uniprot
Match: A0A6H5KQ21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ21_9PHAE) HSP 1 Score: 159 bits (401), Expect = 1.010e-40 Identity = 93/212 (43.87%), Postives = 119/212 (56.13%), Query Frame = 1
Query: 19 LGNLGEWGPSAGVPKAMDWSLSQRMFDLLESDGDARVMHDALRILSRHEGGFLPSSAASAWTAGERVVVLLALSMVVTNARNLNMYTMEGIERQESLLRKVRKNAPLSAATF--GGMLHSVGGDEAVDRWQARWRELAREAGGGGGAXXXGTEPGSLDEGGADHTAHEDRSGIKGACVVCWCAT-HTRDPAVLLCDGCEGEVHASP-CSGAR 642
+G +GEWGPS GVPKA+DWSLS+R + LES+ +ARV+HDALRILSR EGG+LPS W+ GE V VL AL + LN + + +R E+L +KV +S +F GML SVGG+ AV+ WQ + + E DE D D G C+VCWC T H +L+CDGC+GEVH CSG R
Sbjct: 1670 VGGMGEWGPSEGVPKALDWSLSRRARECLESEDNARVLHDALRILSRREGGWLPSPTGC-WSPGEWVAVLAALVAMAVETHTLNHFFSDAEQRCENLRKKVVSGTKMSTRSFQASGMLLSVGGNGAVEFWQRLMKSVDGEMD---------AVKNCADE--EDXXXXXDFGKTPGVCIVCWCPTAHIDASQILMCDGCQGEVHLKKSCSGFR 1869
BLAST of mRNA_S-ischiensis_contig9.20705.1 vs. uniprot
Match: D8LI13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI13_ECTSI) HSP 1 Score: 157 bits (397), Expect = 3.450e-40 Identity = 91/217 (41.94%), Postives = 119/217 (54.84%), Query Frame = 1
Query: 19 LGNLGEWGPSAGVPKAMDWSLSQRMFDLLESDGDARVMHDALRILSRHEGGFLPSSAASAWTAGERVVVLLALSMVVTNARNLNMYTMEGIERQESLLRKVRKNAPLSAATFGGMLHSVGGDEAVDRWQARWRELAREAGGGGGAXXXGTEPGSLDEGGADHTAHEDRSGIK-------GACVVCWCAT-HTRDPAVLLCDGCEGEVHASP-CSGAR 642
+G +GEWGPS GVPKA+DWSLS+R + LES+ +ARV+HDALRIL R EGG+LPS W+ GE V VL AL + LN + + +R E+L +K +S +F GML SVGG+ AV+ WQ + + G +D + A ED G C+VCWC T H +L+CDGC+GEVH CSG R
Sbjct: 1276 VGGMGEWGPSEGVPKALDWSLSRRARECLESEDNARVLHDALRILGRREGGWLPSPTGC-WSPGEWVAVLAALVAMAVETHTLNHFFSDAEQRCENLRKKAVSGTKMSTRSFQGMLLSVGGNGAVEFWQRLMKSV----------------DGEMDA--VKNCADEDXXXXXXDFGKTPGVCIVCWCPTAHIDASQILMCDGCQGEVHLKKSCSGFR 1473 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20705.1 >prot_S-ischiensis_contig9.20705.1 ID=prot_S-ischiensis_contig9.20705.1|Name=mRNA_S-ischiensis_contig9.20705.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=243bp TEDAFELGNLGEWGPSAGVPKAMDWSLSQRMFDLLESDGDARVMHDALRIback to top mRNA from alignment at S-ischiensis_contig9:2717117..2722500+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig9.20705.1 ID=mRNA_S-ischiensis_contig9.20705.1|Name=mRNA_S-ischiensis_contig9.20705.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5384bp|location=Sequence derived from alignment at S-ischiensis_contig9:2717117..2722500+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig9:2717117..2722500+ >mRNA_S-ischiensis_contig9.20705.1 ID=mRNA_S-ischiensis_contig9.20705.1|Name=mRNA_S-ischiensis_contig9.20705.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1458bp|location=Sequence derived from alignment at S-ischiensis_contig9:2717117..2722500+ (Schizocladia ischiensis KU_0333)back to top |