mRNA_S-ischiensis_contig9.20699.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20699.1
Unique NamemRNA_S-ischiensis_contig9.20699.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2703987..2706662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBromodomain
Ec32 orthologEc-04_002830.2
Exons3
Model size842
Cds size840
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20699.1prot_S-ischiensis_contig9.20699.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2703987..2706661 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817368.01364-CDS-S-ischiensis_contig9:2703986..27045191622817368.01364-CDS-S-ischiensis_contig9:2703986..2704519Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2703987..2704519 +
1695741061.256106-CDS-S-ischiensis_contig9:2703986..27045191695741061.256106-CDS-S-ischiensis_contig9:2703986..2704519Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2703987..2704519 +
1622817368.0279527-CDS-S-ischiensis_contig9:2705125..27053301622817368.0279527-CDS-S-ischiensis_contig9:2705125..2705330Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2705126..2705330 +
1695741061.2705097-CDS-S-ischiensis_contig9:2705125..27053301695741061.2705097-CDS-S-ischiensis_contig9:2705125..2705330Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2705126..2705330 +
1622817368.0421624-CDS-S-ischiensis_contig9:2706559..27066611622817368.0421624-CDS-S-ischiensis_contig9:2706559..2706661Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2706560..2706661 +
1695741061.2817287-CDS-S-ischiensis_contig9:2706559..27066611695741061.2817287-CDS-S-ischiensis_contig9:2706559..2706661Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2706560..2706661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20699.1

>prot_S-ischiensis_contig9.20699.1 ID=prot_S-ischiensis_contig9.20699.1|Name=mRNA_S-ischiensis_contig9.20699.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=280bp
RERRRQRKLRKEKKRLLREQQAREREAGGGGGGAAASSSSPRGGSNKHSS
SAAESLRIALERRLGDEEGTKSKKSKPLRASSSASPPPVAGRPPAAADAN
KGSYARTNGFRPGSEGGGAGPSAASSSSKFKHGSGAGTGGGGGGGSSGNH
HHAHLTEVEKKEQAMKGLREYLRSKGYTNPRYLLTGWTAEISTSGHYASH
TFVDTEGRRYKSSSEVSSYFMRTVKPQKSSGKAHREAHPAPCSREEAIAK
AKALYEEVLSAEHLRDLKDDGAAPTPPPSQ
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mRNA from alignment at S-ischiensis_contig9:2703987..2706662+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20699.1 ID=mRNA_S-ischiensis_contig9.20699.1|Name=mRNA_S-ischiensis_contig9.20699.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2676bp|location=Sequence derived from alignment at S-ischiensis_contig9:2703987..2706662+ (Schizocladia ischiensis KU_0333)
CGGGAGCGCCGGCGGCAGAGGAAGCTCCGGAAGGAGAAGAAGAGGCTGCT
GCGCGAGCAACAGGCCCGGGAGAGGGAGGCGGGCGGTGGCGGCGGCGGCG
CCGCCGCGTCGTCGTCGTCCCCCCGGGGGGGCTCCAACAAGCACAGCTCC
TCCGCCGCAGAGTCCCTGCGCATAGCGCTCGAGCGGCGTCTCGGGGACGA
GGAGGGGACCAAGAGCAAGAAGAGCAAGCCGCTGCGCGCGTCTTCTTCTG
CTTCTCCCCCGCCCGTCGCCGGGCGCCCTCCCGCCGCTGCCGACGCGAAT
AAGGGGAGTTACGCCCGCACCAACGGCTTCCGGCCCGGGTCGGAGGGCGG
CGGCGCCGGCCCCTCCGCCGCCTCCTCGTCGTCCAAGTTCAAGCACGGGT
CTGGCGCCGGCACCGGGGGCGGGGGCGGCGGCGGCTCGTCTGGTAACCAC
CACCACGCGCACCTGACGGAGGTGGAGAAGAAGGAGCAGGCCATGAAGGG
GCTCAGGGAGTACCTGCGCAGCAAGGGATACACGTGAGCGACGGGGGGCT
GCGGGCAGGGAGAGGGGAGGGGAGGGGGAAACGGGGGGGCAGGAAAGACG
CTACAATTGGAATCGATTCTGAGGCCTTGGCCCCCCCCCTGGCGTTTCCC
TCGTTGCGGTCCGCCTTGCCGTAGCCATTGTACGAGTATGGCGACGTGCA
GCGAACCATGGGCGTCTGTCTCGTGAGGAAGCACTGTGCTGCTACTCACC
GTACATCCAGTACAGCACAGCACAGCACAGTACAACGCAGCACAGTAGCT
CACCAGGGTAACGTTGTATTCCCAAGCATCGAGCATTTAATGCGGGGTGG
CCCCCTGACGGCGTTTCACGCCGACGCACGTTGCGTTCCATCCACATTTT
GCCCCGGTCACGCGCGTCTCGCCTCTCGCCCCTCCTACCTAATTTAGCTC
TCGCTCAAATCGCTGACGTGTTCTGTGGTGATTCATATTAATTGTAGCGA
GGTACAGTCGCACGTGTGTGAGATCGAGTGTTCTCGTGCTAGTGGCTATT
CCGTTTAAGAATTGAGTGTTCTGTGGCTCAGCCGCCCGCCCGCCCGCCCG
TCCGCCGGCCCGACCTCGCCCCCCCCACCCGCCCGCCAGGAACCCCCGCT
ACCTGCTGACGGGGTGGACGGCCGAGATCTCCACCAGCGGGCACTACGCC
TCCCACACCTTTGTTGACACGGAGGGCCGGCGGTACAAGTCCAGCTCCGA
GGTCAGCTCGTACTTCATGCGGACGGTCAAGCCGCAGAAGAGCAGCGGGA
AGGCCCACCGCGAGGCGCACCCGGCGCCCTGCTCGCGCGAAGAGGTGTGT
GTTTTGTGTGGTGATTCATATACATTGTTTTAAAATTCAATAATAAAACG
AAAACAGATTGTAACGAGGTACAATCGCACGTGTGTGAGATTGTTTGTTT
TGTGTGCCTCTACTCGTGTTGGCCAGGCAGGGGAGCTGCGTGCCTGCTGT
AGGTGCTGGTGCTGCGGGCGTTGTTGTTCTGCGCTTGCCGCCGGCCGGCG
CCCCCCCCGCTCGTGTGTGCGTGTGTTCGTGTGCGTGTGTGTGCGATGTG
TGATGTGATGTGATGCTGCGCGAGTATACTGTACGGACTCCTATTGTACT
TGGTCTGACATCACATCACGCCGTATCATCGGTTGTGTCTGATGTGATGG
TGATGCGACGCGAGTATACTGTACAGACTCCTACTTGCTTGGTCTGACGT
CACATGACGTCGTATCATCAGTTGTGTGTGTGTGTATGTGTGTGTGGTGT
GCTGTGCTGTGATGCGGCGCAAGTATATTGTACGTGCTCCTACTTGGTCT
GACGTCGCATCACGTCGTATCATGGTTGTGTGTGTGTGTGTGTGTGGTGT
GATGTGCTGTGATGCGGCGCGAGTATATTGTACGGACTCCTACTTGGTAT
GACATCGCATCGCATCATATCATGGTTGTGTGTGTGTGTGTGTGTGGTGT
GTGATGTGCTGTGATGTGGCGCGAGTATATTGTACGTACTGCTACTTGGT
CTGACGTCGCATCGCGTCGTATCATGGGTTGTGTGTGTGTGTGTGTTCGT
GTGCGCGTGTGTGTGATGTGTGATGTGATGTGATGTGAATATACATTGGG
TGCTACGAGTTCTTTAAAGTGCATTACAGTCCACAACACATCGCAGTGTG
TGTGCGTGTGTGTGTGCTCATGTCGGACAGGGGGCTGCCCCATCCTGTGC
GTGGCACCGCCCCGCCCCCCATCCCAGTTCACTGCTTCTGCCTCTTAACC
CTTTGGCCCCGTCCCAGTGCACGCTTCTCCAGCCGATTATTAACGTGGGC
ACGTCGCCCGCCTGTGCGCCCCTCCCTCCAACGGCTGTCATCGCACGTCA
GTGATGGAATATCTAATCAAATCAACCTATTATCGACAGTACTAGTATTT
ATTTCTATCGATAGTCGATTTTCGATAGTTTGACCCACACTAAATCCCAC
CCACGAAATCAGTCGAGCCCGATAACTATCCACTGATCGATATTCCATCA
CTATCGCACGTTACGTCATGCAGGCCATTGCAAAGGCCAAGGCCCTGTAC
GAGGAGGTGCTGAGCGCCGAGCACCTGAGGGACCTCAAGGACGACGGCGC
GGCGCCGACGCCACCGCCTTCACAAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2703987..2706662+

>mRNA_S-ischiensis_contig9.20699.1 ID=mRNA_S-ischiensis_contig9.20699.1|Name=mRNA_S-ischiensis_contig9.20699.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1680bp|location=Sequence derived from alignment at S-ischiensis_contig9:2703987..2706662+ (Schizocladia ischiensis KU_0333)
CGGGAGCGCCGGCGGCAGAGGAAGCTCCGGAAGGAGAAGAAGAGGCTGCT
GCGCGAGCAACAGGCCCGGGAGAGGGAGGCGGGCGGTGGCGGCGGCGGCG
CCGCCGCGTCGTCGTCGTCCCCCCGGGGGGGCTCCAACAAGCACAGCTCC
TCCGCCGCAGAGTCCCTGCGCATAGCGCTCGAGCGGCGTCTCGGGGACGA
GGAGGGGACCAAGAGCAAGAAGAGCAAGCCGCTGCGCGCGTCTTCTTCTG
CTTCTCCCCCGCCCGTCGCCGGGCGCCCTCCCGCCGCTGCCGACGCGAAT
AAGGGGAGTTACGCCCGCACCAACGGCTTCCGGCCCGGGTCGGAGGGCGG
CGGCGCCGGCCCCTCCGCCGCCTCCTCGTCGTCCAAGTTCAAGCACGGGT
CTGGCGCCGGCACCGGGGGCGGGGGCGGCGGCGGCTCGTCTGGTAACCAC
CACCACGCGCACCTGACGGAGGTGGAGAAGAAGGAGCAGGCCATGAAGGG
GCTCAGGGAGTACCTGCGCAGCAAGGGATACACCGGGAGCGCCGGCGGCA
GAGGAAGCTCCGGAAGGAGAAGAAGAGGCTGCTGCGCGAGCAACAGGCCC
GGGAGAGGGAGGCGGGCGGTGGCGGCGGCGGCGCCGCCGCGTCGTCGTCG
TCCCCCCGGGGGGGCTCCAACAAGCACAGCTCCTCCGCCGCAGAGTCCCT
GCGCATAGCGCTCGAGCGGCGTCTCGGGGACGAGGAGGGGACCAAGAGCA
AGAAGAGCAAGCCGCTGCGCGCGTCTTCTTCTGCTTCTCCCCCGCCCGTC
GCCGGGCGCCCTCCCGCCGCTGCCGACGCGAATAAGGGGAGTTACGCCCG
CACCAACGGCTTCCGGCCCGGGTCGGAGGGCGGCGGCGCCGGCCCCTCCG
CCGCCTCCTCGTCGTCCAAGTTCAAGCACGGGTCTGGCGCCGGCACCGGG
GGCGGGGGCGGCGGCGGCTCGTCTGGTAACCACCACCACGCGCACCTGAC
GGAGGTGGAGAAGAAGGAGCAGGCCATGAAGGGGCTCAGGGAGTACCTGC
GCAGCAAGGGATACACGAACCCCCGCTACCTGCTGACGGGGTGGACGGCC
GAGATCTCCACCAGCGGGCACTACGCCTCCCACACCTTTGTTGACACGGA
GGGCCGGCGGTACAAGTCCAGCTCCGAGGTCAGCTCGTACTTCATGCGGA
CGGTCAAGCCGCAGAAGAGCAGCGGGAAGGCCCACCGCGAGGCGCACCCG
GCGCCCTGCTCGCGCGAAGAGGAACCCCCGCTACCTGCTGACGGGGTGGA
CGGCCGAGATCTCCACCAGCGGGCACTACGCCTCCCACACCTTTGTTGAC
ACGGAGGGCCGGCGGTACAAGTCCAGCTCCGAGGTCAGCTCGTACTTCAT
GCGGACGGTCAAGCCGCAGAAGAGCAGCGGGAAGGCCCACCGCGAGGCGC
ACCCGGCGCCCTGCTCGCGCGAAGAGGCCATTGCAAAGGCCAAGGCCCTG
TACGAGGAGGTGCTGAGCGCCGAGCACCTGAGGGACCTCAAGGACGACGG
CGCGGCGCCGACGCCACCGCCTTCACAAGCCATTGCAAAGGCCAAGGCCC
TGTACGAGGAGGTGCTGAGCGCCGAGCACCTGAGGGACCTCAAGGACGAC
GGCGCGGCGCCGACGCCACCGCCTTCACAA
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