mRNA_S-ischiensis_contig9.20689.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20689.1
Unique NamemRNA_S-ischiensis_contig9.20689.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20689.1 vs. uniprot
Match: D7FT24_ECTSI (Similar to ataxia telangiectasia and Rad3 related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT24_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 3.280e-12
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 2 
Query:    5 APWEFQLEGLALVLIREYLVPAFRAAPTAMEQDRVAFGIQELLSLL 142
            APWE  LE ++L+LIR+ LVPAFRA+ T+MEQDRVAFGIQELL +L
Sbjct:  479 APWEMTLEEMSLLLIRDLLVPAFRASTTSMEQDRVAFGIQELLRIL 524
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT24_ECTSI3.280e-1271.74Similar to ataxia telangiectasia and Rad3 related ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2654960..2655764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size224
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817367.7895017-CDS-S-ischiensis_contig9:2654959..26550591622817367.7895017-CDS-S-ischiensis_contig9:2654959..2655059Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2654960..2655059 +
1695741061.128876-CDS-S-ischiensis_contig9:2654959..26550591695741061.128876-CDS-S-ischiensis_contig9:2654959..2655059Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2654960..2655059 +
1622817367.8024905-CDS-S-ischiensis_contig9:2655640..26557621622817367.8024905-CDS-S-ischiensis_contig9:2655640..2655762Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2655641..2655762 +
1695741061.1394644-CDS-S-ischiensis_contig9:2655640..26557621695741061.1394644-CDS-S-ischiensis_contig9:2655640..2655762Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2655641..2655762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20689.1prot_S-ischiensis_contig9.20689.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2654960..2655762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20689.1

>prot_S-ischiensis_contig9.20689.1 ID=prot_S-ischiensis_contig9.20689.1|Name=mRNA_S-ischiensis_contig9.20689.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=74bp
AGALGVPAGGAGAGADPRVPGAGVQGRADGHGAGSRRVRHPGAAFPPPAA
GAVEGRGQGRGQSGRADAPAYQAS
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mRNA from alignment at S-ischiensis_contig9:2654960..2655764+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20689.1 ID=mRNA_S-ischiensis_contig9.20689.1|Name=mRNA_S-ischiensis_contig9.20689.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=805bp|location=Sequence derived from alignment at S-ischiensis_contig9:2654960..2655764+ (Schizocladia ischiensis KU_0333)
GCCGGCGCCCTGGGAGTTCCAGCTGGAGGGGCTGGCGCTGGTGCTGATCC
GCGAGTACCTGGTGCCGGCGTTCAGGGCCGCGCCGACGGCCATGGAGCAG
GTGGGATGGATGACGTCCGTCGCGGGTGGTGGTGGTGACGATGGCAACGG
CGGTGGTGATGGCTGCCGCTGCAGCAGCAGTGGCGGTGGCCACGGCGCTG
ATTTTATGATCCCGTACAGTAGTTTGTATTGCAGGACTACCGTATGCGCT
TGGAAGTGTTGATCCGGTGCTGTAGTTCTTGTACTACTGTACTGTAGTAC
TGGCCCTACTTAGTACTTTGAAGTAGTACGGTAGGAGGCGTACTTTGACG
GCACTGAATCGGCAAGAACAAGAACACACTCAATTCTTAAATGGGACGAC
CACTAATACGAGAACCCTCAATCTCACACACGCTCAGACCGTTGAAGCGG
CATTTTGCTTGTGGGCGTTTGTTCACTCAATAGCCACCCCCTCGTACGCT
CTCGGCGCACCCCCAACCCCCAAGCACCGATCTCCGAACCTTTGCGACAC
AACAAGCTCGTGTCATTCGTTCTTCAGAAGCACACAAAACAAACATCCGT
CGCCCTCCCCCTCCCTCCCCCCGCCCCCCCCCGCGCAATTGACGGGCGGA
AAAATAACGTCCCGGTCCGGTCATCAATCAGGATCGCGTCGCGTTCGGCA
TCCAGGAGCTGCTTTCCCTCCTCCGGCAGCAGGAGCAGTTGAGGGTCGAG
GCCAAGGCCGGGGCCAAAGTGGCCGCGCAGATGCCCCCGCCTACCAAGCG
AGTGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2654960..2655764+

>mRNA_S-ischiensis_contig9.20689.1 ID=mRNA_S-ischiensis_contig9.20689.1|Name=mRNA_S-ischiensis_contig9.20689.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=444bp|location=Sequence derived from alignment at S-ischiensis_contig9:2654960..2655764+ (Schizocladia ischiensis KU_0333)
GCCGGCGCCCTGGGAGTTCCAGCTGGAGGGGCTGGCGCTGGTGCTGATCC
GCGAGTACCTGGTGCCGGCGTTCAGGGCCGCGCCGACGGCCATGGAGCAG
GCCGGCGCCCTGGGAGTTCCAGCTGGAGGGGCTGGCGCTGGTGCTGATCC
GCGAGTACCTGGTGCCGGCGTTCAGGGCCGCGCCGACGGCCATGGAGCAG
GATCGCGTCGCGTTCGGCATCCAGGAGCTGCTTTCCCTCCTCCGGCAGCA
GGAGCAGTTGAGGGTCGAGGCCAAGGCCGGGGCCAAAGTGGCCGCGCAGA
TGCCCCCGCCTACCAAGCGAGTGATCGCGTCGCGTTCGGCATCCAGGAGC
TGCTTTCCCTCCTCCGGCAGCAGGAGCAGTTGAGGGTCGAGGCCAAGGCC
GGGGCCAAAGTGGCCGCGCAGATGCCCCCGCCTACCAAGCGAGT
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