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Homology
BLAST of mRNA_S-ischiensis_contig9.20685.1 vs. uniprot
Match: D7FT23_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT23_ECTSI) HSP 1 Score: 69.7 bits (169), Expect = 5.240e-11 Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 1
Query: 22 GVGGWGGAASVAEFEFLLRYFPDYGPKRLIEGVLSPLLADLAWELDGPRRADATRALEAVAHLVDCH 222
G W S +FLL+YFP+ PKRLIEGVL +L ++W+L GPRR +AT AL+AVAH+ H
Sbjct: 1573 GRSAWTDEKSSPGLQFLLKYFPESTPKRLIEGVLPQILEQVSWQLCGPRREEATVALQAVAHISYQH 1639
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 449 |
| Cds size | 447 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817367.723652-CDS-S-ischiensis_contig9:2649902..2649979 | 1622817367.723652-CDS-S-ischiensis_contig9:2649902..2649979 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2649903..2649979 + |
| 1695741061.0910392-CDS-S-ischiensis_contig9:2649902..2649979 | 1695741061.0910392-CDS-S-ischiensis_contig9:2649902..2649979 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2649903..2649979 + |
| 1622817367.7349606-CDS-S-ischiensis_contig9:2650577..2650695 | 1622817367.7349606-CDS-S-ischiensis_contig9:2650577..2650695 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2650578..2650695 + |
| 1695741061.1022458-CDS-S-ischiensis_contig9:2650577..2650695 | 1695741061.1022458-CDS-S-ischiensis_contig9:2650577..2650695 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2650578..2650695 + |
| 1622817367.7490895-CDS-S-ischiensis_contig9:2651190..2651442 | 1622817367.7490895-CDS-S-ischiensis_contig9:2651190..2651442 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2651191..2651442 + |
| 1695741061.1139112-CDS-S-ischiensis_contig9:2651190..2651442 | 1695741061.1139112-CDS-S-ischiensis_contig9:2651190..2651442 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2651191..2651442 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20685.1 >prot_S-ischiensis_contig9.20685.1 ID=prot_S-ischiensis_contig9.20685.1|Name=mRNA_S-ischiensis_contig9.20685.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=149bp
MSGEARGGVGGWGGAASVAEFEFLLRYFPDYGPKRLIEGVLSPLLADLAW
ELDGPRRADATRALEAVAHLVDCHRPPSREHEEPRTEEANYAAVVVAGPG
IDDARPGGGGGGGGARGDTGKGKKRGAARETGAMAAAAAEEEPADRQQR back to topmRNA from alignment at S-ischiensis_contig9:2649903..2651442+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig9.20685.1 ID=mRNA_S-ischiensis_contig9.20685.1|Name=mRNA_S-ischiensis_contig9.20685.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1540bp|location=Sequence derived from alignment at S-ischiensis_contig9:2649903..2651442+ (Schizocladia ischiensis KU_0333)
ATGAGCGGGGAGGCGAGGGGGGGGGTGGGGGGCTGGGGCGGGGCGGCGTC
GGTGGCCGAGTTTGAGTTCCTGCTGAGGTGGGCGGGGGTGATTCATGTAC
TTCAAAGTAAATTGTAGCGAGGTACTATCGCACGTGTGTGAGATTGAGCG
TTCTCGTATTAGTGGTTAGGTGGGCGGGGGCTAGGCGTGTTGACGATGTC
AACGCATCCCAGATGCCATTGTATGGACAGTGAATAGCACACCCCAGATC
CTCGTCCTCCGTCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCTCCCCCT
CAACACCCTCTATCCCCTACTCCCCCTCCCCCTCCCCCTCCCCGTGCTCC
TCCTCCTCCTCCCCCTCCCCCTCCTCCTCCTCCCCCCCCCCCCCCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCTTCCCCCCCCCCTCCCTTGCCTCCGCCCCCCCTCTTCCTTGCCGC
CGCACCCACCGCAAACTATGTGCGGCAGCCTTGCCCTAAACAACAAACAC
CCTGCTTGAGACTGCCGTGTGCATGCCGTCCCCCGCGTTTGGCCTTCCCA
CGGGTGCGGTCCGCCCGCCCACCCATCTCATCGCCCCCCCAATGCGACGA
CAAATATAACGTTTTGGCTCGCCAGGTATTTTCCTGACTACGGCCCCAAG
CGCCTGATCGAGGGCGTCCTATCTCCGCTTCTCGCAGACCTGGCCTGGGA
GCTTGATGGGCCCAGGCGCGCAGATGCCACTCGGGCGCTGGAGGTGCGAT
GTGCAGTGATGTTCTATCGATCAGTAGATAGTTATCGGGCCCGACTGATG
TCGTGGGTGGCGTTGCTAACTGCTTGGATTTAGTGTGGGTCACACTATCG
AATATCGGCTATCGATAGATATGCTCAAAATAGATATGTACTTCAAAGTA
GATCAGTACTGTCGATAGATAGGTCGATTTGCATAGATATTCCATCACTG
GCAATGTGTGTCACCCCCTCAGTGCTTGCCTCTCGCTCCCGCCCTCCCTC
CCTCCGTCCTTGCTTCCCTCCTTCCTCCCCCCCCCTCCCTCCCTCCCTCC
GACCCTGCCTTTCTTCTCCTCTTCCTCCCTGCCTGTCTGCTGCGCGCCCG
AAGGATCCTTTCAGTACTGTCGGCGCTTTGCGCAACCACAAGTACCTAGA
GCACGCCTTGTGTGTCAAGGGTGGTCGTGTGTGTCGGCTCGGTCGGCCCC
TTCACCCCCCCCGGCTGCCATGGCGCATGCCGCCCCAGGCTGTGGCACAC
CTCGTAGACTGCCACCGCCCGCCCTCCCGCGAGCACGAGGAACCCCGCAC
AGAGGAAGCCAACTACGCCGCCGTCGTCGTCGCTGGGCCTGGCATCGACG
ATGCCCGGCCTGGCGGTGGTGGCGGCGGCGGCGGCGCCCGCGGTGACACA
GGCAAGGGCAAGAAAAGGGGCGCTGCACGGGAGACAGGGGCGATGGCGGC
GGCGGCGGCGGAGGAGGAGCCCGCGGACCGGCAGCAACGG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig9:2649903..2651442+ >mRNA_S-ischiensis_contig9.20685.1 ID=mRNA_S-ischiensis_contig9.20685.1|Name=mRNA_S-ischiensis_contig9.20685.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=894bp|location=Sequence derived from alignment at S-ischiensis_contig9:2649903..2651442+ (Schizocladia ischiensis KU_0333)
ATGAGCGGGGAGGCGAGGGGGGGGGTGGGGGGCTGGGGCGGGGCGGCGTC
GGTGGCCGAGTTTGAGTTCCTGCTGAGATGAGCGGGGAGGCGAGGGGGGG
GGTGGGGGGCTGGGGCGGGGCGGCGTCGGTGGCCGAGTTTGAGTTCCTGC
TGAGGTATTTTCCTGACTACGGCCCCAAGCGCCTGATCGAGGGCGTCCTA
TCTCCGCTTCTCGCAGACCTGGCCTGGGAGCTTGATGGGCCCAGGCGCGC
AGATGCCACTCGGGCGCTGGAGGTATTTTCCTGACTACGGCCCCAAGCGC
CTGATCGAGGGCGTCCTATCTCCGCTTCTCGCAGACCTGGCCTGGGAGCT
TGATGGGCCCAGGCGCGCAGATGCCACTCGGGCGCTGGAGGCTGTGGCAC
ACCTCGTAGACTGCCACCGCCCGCCCTCCCGCGAGCACGAGGAACCCCGC
ACAGAGGAAGCCAACTACGCCGCCGTCGTCGTCGCTGGGCCTGGCATCGA
CGATGCCCGGCCTGGCGGTGGTGGCGGCGGCGGCGGCGCCCGCGGTGACA
CAGGCAAGGGCAAGAAAAGGGGCGCTGCACGGGAGACAGGGGCGATGGCG
GCGGCGGCGGCGGAGGAGGAGCCCGCGGACCGGCAGCAACGGGCTGTGGC
ACACCTCGTAGACTGCCACCGCCCGCCCTCCCGCGAGCACGAGGAACCCC
GCACAGAGGAAGCCAACTACGCCGCCGTCGTCGTCGCTGGGCCTGGCATC
GACGATGCCCGGCCTGGCGGTGGTGGCGGCGGCGGCGGCGCCCGCGGTGA
CACAGGCAAGGGCAAGAAAAGGGGCGCTGCACGGGAGACAGGGGCGATGG
CGGCGGCGGCGGCGGAGGAGGAGCCCGCGGACCGGCAGCAACGG back to top
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