mRNA_S-ischiensis_contig9.20681.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20681.1
Unique NamemRNA_S-ischiensis_contig9.20681.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20681.1 vs. uniprot
Match: D7FT23_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT23_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 4.550e-32
Identity = 64/131 (48.85%), Postives = 89/131 (67.94%), Query Frame = 1 
Query:   25 LAQMVADVDIHLHNHPSKGEEECSETMMKVRGALPGLMEEYLSPRADPQRVSEMCLFLKMLTGPE-LECDHAAAIFEDGEVRAVALPVLRICALLPLPRFACLQERLVGHVGMLASLWLPRGAPTLLVLFQ 414
            L  ++  ++ HL +H ++  +EC   M  V  +L GL++++ S  A+P RVSEM LF  M +G   LEC+HA  +F +G  RAV+ P+ ++CALLPLPRFA LQ RLV HVG+LASLWLPR A +L+  FQ
Sbjct:   19 LEGVMEKINRHLRDHHARTSDECQAVMSTVERSLEGLVDKHFSVDAEPSRVSEMLLFHVMFSGQSYLECEHAQLVFGEGGARAVSFPIRKLCALLPLPRFAGLQPRLVQHVGLLASLWLPRDAASLVEFFQ 149
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT23_ECTSI4.550e-3248.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2638485..2640857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size457
Cds size456
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20681.1prot_S-ischiensis_contig9.20681.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2638485..2640857 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817395.8801696-CDS-S-ischiensis_contig9:2638484..26386961622817395.8801696-CDS-S-ischiensis_contig9:2638484..2638696Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2638485..2638696 +
1695741082.6424763-CDS-S-ischiensis_contig9:2638484..26386961695741082.6424763-CDS-S-ischiensis_contig9:2638484..2638696Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2638485..2638696 +
1622817395.8913364-CDS-S-ischiensis_contig9:2639867..26399881622817395.8913364-CDS-S-ischiensis_contig9:2639867..2639988Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2639868..2639988 +
1695741082.6533296-CDS-S-ischiensis_contig9:2639867..26399881695741082.6533296-CDS-S-ischiensis_contig9:2639867..2639988Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2639868..2639988 +
1622817395.9022377-CDS-S-ischiensis_contig9:2640734..26408571622817395.9022377-CDS-S-ischiensis_contig9:2640734..2640857Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2640735..2640857 +
1695741082.6644351-CDS-S-ischiensis_contig9:2640734..26408571695741082.6644351-CDS-S-ischiensis_contig9:2640734..2640857Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2640735..2640857 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20681.1

>prot_S-ischiensis_contig9.20681.1 ID=prot_S-ischiensis_contig9.20681.1|Name=mRNA_S-ischiensis_contig9.20681.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=152bp
PARHPSDRLAQMVADVDIHLHNHPSKGEEECSETMMKVRGALPGLMEEYL
SPRADPQRVSEMCLFLKMLTGPELECDHAAAIFEDGEVRAVALPVLRICA
LLPLPRFACLQERLVGHVGMLASLWLPRGAPTLLVLFQVHMLGGQCCSTR
A*
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mRNA from alignment at S-ischiensis_contig9:2638485..2640857+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20681.1 ID=mRNA_S-ischiensis_contig9.20681.1|Name=mRNA_S-ischiensis_contig9.20681.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2373bp|location=Sequence derived from alignment at S-ischiensis_contig9:2638485..2640857+ (Schizocladia ischiensis KU_0333)
CCCGCCCGCCACCCCAGCGATCGACTTGCGCAGATGGTCGCAGATGTGGA
TATTCACCTGCACAATCACCCCTCCAAGGGGGAGGAGGAGTGCTCCGAGA
CCATGATGAAGGTGCGGGGGGCGCTCCCGGGCCTGATGGAGGAGTACCTG
AGCCCGCGGGCCGACCCGCAGCGGGTGTCGGAGATGTGCCTCTTCCTGAA
GATGCTGACGGGGTGAGCGAGAGCGCCAGTGGGGCGCCGCTGGCCGGCAA
TAGTACGAAGTACATGGTTCGAGGTACTAGTATTACCTACGAAGTACGAG
ATACTGTATTGTAGCCCGCCTCAGGCTGAGCCCAACGGTCCCCCAGCGGC
GCCCTCCTAAATAATTCTGTACAAGTACTTCGCACTTCGTTAGTAGCTGC
GACGCTGTGTATTTGCAAATGTATTGGCTGACAACGCCTGGTAAGTCGAG
TTGGGCCCATTTCATGTAGCACCGCAAGTCCTGCTCTAGTACTGGTGTGT
ACTCGCGTTCGGACGAGGGCTCTGCTCTCTGTGCATGCCCTGGACCGAAC
GATCCTCGCCTTTGCTCGTTCTCGTGGATGGCTGGCCAGCTGTAGCTGTC
GTCATTGGCCACGCGTCCTATTGGACGAGTACGAGTACCTAGTCTACTGG
CCTGTGCAGTACTCGAGCAATAAACACTACAGCGCTGTAGTGCTTCGGAG
CGTGTGCTCGTGTCGGACAGGGTTGTTATTGTCCTGTGCCCTTTGCGTGC
CACCGACGGTCGGCCCAGTACACCCCGTGCTGGACCACCAACCGGCCCTA
ATCGGCCATTGGCCTCTCGTCCCGAGGTGCTCTTCAGTTTCGAAGTACTC
GAAGTAAGTGCCTTGAAGAGCTCAGGGACAAGATGATGACCACGATACTG
TAGGGAAGTATTTCCGGGGTGCTACCTACAGTACTGCTTGATTCACGCAG
GGTTTGTTGGGAGGATGAGTATAAGTACAGCAGCACGTTGTCGGGCGCGC
TCGCTGCAGCCCAGAAGACGTAGACCGCTCGCCACAAGTGGCCAAGTGTC
CTGTACAATGCAACCACTGCTTAGCCGCGTGGGGCTGACTTAGCCCTTTG
GTCCCCGGGAGAACATACCCAGCATACTCGTACTACCTGCCCGCACTACC
TATAGTGTAGCTCCGTGCACACCTGGGCCAAAAGGGACCCCTCCAGGGGA
GGTTATCACGCGGGTATCCTGCTACAGCACTGTAGTGGTACTGATCTCGC
CCTCTCCATGGCCTGCTTGCCTCTGTGTCCCCCTGTCCCCCCCTCTCTCT
CTCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCT
TTGGCGGCACCTGCGGCTTTATGTGCACGGCAGGCCGGAGTTGGAGTGCG
ACCATGCGGCCGCCATCTTCGAGGACGGGGAGGTGCGGGCGGTGGCACTC
CCCGTGCTCAGGATCTGCGCCCTGCTGCCCCTGCCCCGCTTCGCCTGCCT
GCAGGTGAGGGGGAGAGGCGACGGTGGTGGGGGTGGCGGCGGCAGCGGTG
GCGGTGGTGGGGGGGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGG
TGGTGGTGGTGGTGGCAGCGGTGGTGGTGATGGCGGAGGCGGTGGCGGTG
GCAGCGGTGGTGTTCCCGTACCGCAAGGCGGCCCAGCCCTTCCAAGAACT
GCTGCACGCTAATCTCGCACTTAACTCCTATGTCAAAAGTATGATTTAGT
GTACTGTCGTCCCCTAAGGGTTTCGTGATGTCTCAGAGTGGATTCGTTCA
ACCCCCAGGGCGCCCATTTCGCAAACATGTTCGGCGGGCAAGTACCTCAT
GAGCACGCACGCACACACACACACACACACACACACACACACACACAGAT
ACACACACTCTCTCTCTCTCTCAAACTCGCACACGCGCGCGTGCGCTCAC
ATGCACGCACACAAGCACGCGGGGTCTCCCCGAGCACGCGTGAGCCAATC
GTAGAAAGGCTGACAACGCTAATGTGAGAACACTCAATCTCACACACGTG
CGATTGTACCTCATTAATTCCAATATATATGAATCACCACTAAAATTCCA
GCGTCGACTCATTACTCTGACCCATGGCACGCTCTGCACTTCACCGGCTA
TATTGATTGCTCCTATTTCGAGAAGTACTTCAGAACTGCTTCTAGAGTAG
GAGAATAAGCAAGCACCTCATGAGCCCCCCCCCCCCCCCCCGCCCCCCAG
GAGCGCCTGGTCGGCCACGTGGGCATGTTGGCCTCGCTGTGGCTCCCCCG
GGGTGCCCCCACCCTCCTGGTCCTCTTCCAGGTACATATGCTTGGCGGGC
AGTGCTGTAGCACTCGAGCATAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2638485..2640857+

>mRNA_S-ischiensis_contig9.20681.1 ID=mRNA_S-ischiensis_contig9.20681.1|Name=mRNA_S-ischiensis_contig9.20681.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=912bp|location=Sequence derived from alignment at S-ischiensis_contig9:2638485..2640857+ (Schizocladia ischiensis KU_0333)
CCCGCCCGCCACCCCAGCGATCGACTTGCGCAGATGGTCGCAGATGTGGA
TATTCACCTGCACAATCACCCCTCCAAGGGGGAGGAGGAGTGCTCCGAGA
CCATGATGAAGGTGCGGGGGGCGCTCCCGGGCCTGATGGAGGAGTACCTG
AGCCCGCGGGCCGACCCGCAGCGGGTGTCGGAGATGTGCCTCTTCCTGAA
GATGCTGACGGGCCCGCCCGCCACCCCAGCGATCGACTTGCGCAGATGGT
CGCAGATGTGGATATTCACCTGCACAATCACCCCTCCAAGGGGGAGGAGG
AGTGCTCCGAGACCATGATGAAGGTGCGGGGGGCGCTCCCGGGCCTGATG
GAGGAGTACCTGAGCCCGCGGGCCGACCCGCAGCGGGTGTCGGAGATGTG
CCTCTTCCTGAAGATGCTGACGGGGCCGGAGTTGGAGTGCGACCATGCGG
CCGCCATCTTCGAGGACGGGGAGGTGCGGGCGGTGGCACTCCCCGTGCTC
AGGATCTGCGCCCTGCTGCCCCTGCCCCGCTTCGCCTGCCTGCAGGCCGG
AGTTGGAGTGCGACCATGCGGCCGCCATCTTCGAGGACGGGGAGGTGCGG
GCGGTGGCACTCCCCGTGCTCAGGATCTGCGCCCTGCTGCCCCTGCCCCG
CTTCGCCTGCCTGCAGGAGCGCCTGGTCGGCCACGTGGGCATGTTGGCCT
CGCTGTGGCTCCCCCGGGGTGCCCCCACCCTCCTGGTCCTCTTCCAGGTA
CATATGCTTGGCGGGCAGTGCTGTAGCACTCGAGCATAGGAGCGCCTGGT
CGGCCACGTGGGCATGTTGGCCTCGCTGTGGCTCCCCCGGGGTGCCCCCA
CCCTCCTGGTCCTCTTCCAGGTACATATGCTTGGCGGGCAGTGCTGTAGC
ACTCGAGCATAG
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