mRNA_S-ischiensis_contig9.20669.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20669.1
Unique NamemRNA_S-ischiensis_contig9.20669.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20669.1 vs. uniprot
Match: A0A836CJB6_9STRA (SGF29 tudor-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJB6_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.530e-17
Identity = 59/137 (43.07%), Postives = 79/137 (57.66%), Query Frame = 1 
Query:   43 GEQVAVRSAQHE---AWILASVVRYLPSRHAYEVRDADMTASREKMEVKVDSVLLLTKSTEHLSKGTHVLARYPETTTFYPGKVTKPVPHRASLTEDCTVSVQFEDDKNATNGKTPHRLVQTTYAIPFTEAENAYDG 444
            GE+VA R+  ++   +WILASV RY  +   YEV D D T+   K  V    VL LT + E L KG  VLA +P+TT+FY GK+ K +  +  +TE     VQFEDD++ T GKTP+R +   Y  P  +A  A  G
Sbjct:  120 GEKVAARTNPNDDNGSWILASVQRYYANLDKYEVADEDDTS--RKFMVDACFVLRLTDNVEGLHKGGAVLAMFPDTTSFYKGKMAKSL--KRGMTE---ALVQFEDDEDET-GKTPNRRIDARYVFPVPQANGAMGG 248
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BLAST of mRNA_S-ischiensis_contig9.20669.1 vs. uniprot
Match: A0A7S2XXI6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXI6_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 6.480e-17
Identity = 56/141 (39.72%), Postives = 81/141 (57.45%), Query Frame = 1 
Query:   43 GEQVAVR---SAQHEAWILASVVRYLPSRHAYEVRDADMTASREKMEVKVDSVLLLTKSTEHLSKGTHVLARYPETTTFYPGKVTKPVPHRAS-LTEDCTVSVQFEDDKNATNGKTPHRLVQTTYAIPFTEAENAYDGDGA 453
            GE+VA +   +++ E WILASVVRY  +  AYEV+D D       + VK   VL L      L KG  VLA +PETT+FY  K++KP     +  T++C V  +F DD++ T G+TP+R V + Y +P  +  ++   D A
Sbjct:   38 GEKVAAKVPDASEEECWILASVVRYHSADEAYEVKDED--DETRIIRVKASEVLKLEPGLGDLEKGDEVLAIFPETTSFYRAKISKPPKKSGNPATQECIV--KFVDDEDDT-GRTPNRRVLSMYVVPIPQDNSSASEDSA 173
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BLAST of mRNA_S-ischiensis_contig9.20669.1 vs. uniprot
Match: A0A7S2WVH2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVH2_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.910e-16
Identity = 53/134 (39.55%), Postives = 81/134 (60.45%), Query Frame = 1 
Query:   34 AAKGEQVAVR-SAQHEAWILASVVRYLPSRHAYEVRDADMTASREKMEVKVDSVLLLTKSTEHLSKGTHVLARYPETTTFYPGKVTKPVPHR-ASLTEDCTVSVQFEDDKNATNGKTPHRLVQTTYAIPFTEAE 429
            A + EQVA R   +   WILA+V +Y PS   ++V D D     + + +  D V+ L ++ E+L KG  VLA +P+TT+FY G+++KPV +R AS   D  V VQF+DD++ T G+ PHR +   + +P  + E
Sbjct:  132 AQEDEQVAARIDGEESGWILATVKKYHPSTDEFDVLDED--DDTKLIRLSRDLVIRLDEAVENLQKGDTVLAVFPDTTSFYRGRISKPVKNRSASSGGDSEVFVQFDDDEDET-GRLPHRCIPARHVMPDPDEE 262
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BLAST of mRNA_S-ischiensis_contig9.20669.1 vs. uniprot
Match: A0A7S2D9R3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D9R3_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.790e-15
Identity = 54/129 (41.86%), Postives = 78/129 (60.47%), Query Frame = 1 
Query:   43 GEQVAVR---SAQHEAWILASVVRYLPSRHAYEVRDADMTASREKMEVKVDSVLLLTKSTEHLSKGTHVLARYPETTTFYPGKVTKPVPHRASLTEDCT---VSVQFEDDKNATNGKTPHRLVQTTYAI 411
            GEQV  +   S ++ +WILA+V +Y PS   +EV+D D  +   K+      ++ L  S EH+SKG  VLA +P+TT+FY  +++KPV  + S T   T   + VQFEDD++ T G+TPHR V   Y I
Sbjct:  137 GEQVGAKVSKSDENGSWILATVKKYYPSEDLFEVQDEDDDSKLTKLPP--SELMRLDDSVEHMSKGQAVLAVFPDTTSFYRARISKPV--KRSSTNYRTSPDIYVQFEDDEDET-GRTPHRRVIARYVI 260
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CJB6_9STRA3.530e-1743.07SGF29 tudor-like domain-containing protein n=1 Tax... [more]
A0A7S2XXI6_9STRA6.480e-1739.72Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2WVH2_9STRA4.910e-1639.55Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2D9R3_9STRA2.790e-1541.86Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2440441..2442562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue6.8e-15
Seed eggNOG ortholog2880.D7FR05
EggNOG free text desc.SGF29 tudor-like domain
EggNOG OGs2E9KP@1,2SFY2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size510
Cds size507
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20669.1prot_S-ischiensis_contig9.20669.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2440443..2442562 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817394.3266616-CDS-S-ischiensis_contig9:2440442..24405061622817394.3266616-CDS-S-ischiensis_contig9:2440442..2440506Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2440443..2440506 -
1695741081.3389065-CDS-S-ischiensis_contig9:2440442..24405061695741081.3389065-CDS-S-ischiensis_contig9:2440442..2440506Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2440443..2440506 -
1622817394.3383124-CDS-S-ischiensis_contig9:2440762..24409681622817394.3383124-CDS-S-ischiensis_contig9:2440762..2440968Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2440763..2440968 -
1695741081.3545754-CDS-S-ischiensis_contig9:2440762..24409681695741081.3545754-CDS-S-ischiensis_contig9:2440762..2440968Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2440763..2440968 -
1622817394.3490417-CDS-S-ischiensis_contig9:2441940..24421261622817394.3490417-CDS-S-ischiensis_contig9:2441940..2442126Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2441941..2442126 -
1695741081.3641963-CDS-S-ischiensis_contig9:2441940..24421261695741081.3641963-CDS-S-ischiensis_contig9:2441940..2442126Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2441941..2442126 -
1622817394.3636055-CDS-S-ischiensis_contig9:2442511..24425621622817394.3636055-CDS-S-ischiensis_contig9:2442511..2442562Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2442512..2442562 -
1695741081.3736675-CDS-S-ischiensis_contig9:2442511..24425621695741081.3736675-CDS-S-ischiensis_contig9:2442511..2442562Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2442512..2442562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20669.1

>prot_S-ischiensis_contig9.20669.1 ID=prot_S-ischiensis_contig9.20669.1|Name=mRNA_S-ischiensis_contig9.20669.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=169bp
RRTRFAEPEQIAAKGEQVAVRSAQHEAWILASVVRYLPSRHAYEVRDADM
TASREKMEVKVDSVLLLTKSTEHLSKGTHVLARYPETTTFYPGKVTKPVP
HRASLTEDCTVSVQFEDDKNATNGKTPHRLVQTTYAIPFTEAENAYDGDG
AFYKDPHGMQPPETGAWHQ
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mRNA from alignment at S-ischiensis_contig9:2440441..2442562-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20669.1 ID=mRNA_S-ischiensis_contig9.20669.1|Name=mRNA_S-ischiensis_contig9.20669.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2122bp|location=Sequence derived from alignment at S-ischiensis_contig9:2440441..2442562- (Schizocladia ischiensis KU_0333)
AGGCGCACGCGGTTTGCCGAGCCGGAGCAGATTGCGGCCAAGGGCGAGCA
GGTGGGCGGTCTCGTTTCGTATTCTCGTTCCCTCCGCGAGGTCCTGCCCC
CCCCCCCTCCCCCCCAGTGCCGTGTTTTTCGTCTTCCGTGTCGCGGAGCA
AAGCGAGCCCCTTGTTGGGGCCCCCCGGGGGCTCCCACGGCAGCCATGAG
TGCACGTACCGTTCCCGACAGCAGTTGACTCTCGAGCCACACGCGTCGAG
TAGCTTCACTGACACCCCCTCCTTCCTCTCCCGCCGATGCCGCCGCTGCC
GCCGCCACCGCCACCGCTTCCCCTCGACGCATTCGCTGCCTTTGTCGCGG
GTGCCGCCGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTTCC
CCTCGACGCATTCGCTTGCCTTTGTCGCTGTTCCAGGTGGCGGTCCGGTC
TGCGCAGCACGAGGCGTGGATCCTGGCGTCGGTGGTGCGCTACCTCCCGT
CCCGGCACGCGTACGAGGTGCGGGACGCGGACATGACTGCCTCGAGGGAG
AAGATGGAGGTCAAGGTCGATTCGGTGCTGCTGCTCACCAAGTCCACCGA
GCACCTCAGCAAGGGCACGCATGTGAGGAGGAGGAGGAGGGGGGGGAATG
GGAGGGAGGAGGCAGCGGCGGCGGAGGAGGAGGAGAGAGTTGCTGTACAG
TAGGATAGGTAGTCGAGTAGTGGCAGTGTCACCAAGTCCACCGAGCACCT
CAGCAAGGGCACCCATGTGAGGAGGAGGGGGAGGGGGGGGGGACTAGGAG
AAGGCTGCTATACAGTACGAGTAGTCGAGTAGTGGCAGTGCAGGTGGCCG
CAGCAGGGGGAGGAGGAAGCGGGGGAGGTGGAGTGTTGTTGGGCGGGAGT
TGGGCGGGGTCGTGTGTGTGCGTGTGTGTATGTGGTTGGTGTTTGGTTGG
TTCGCGTCTTGCCTGCCGTAAGTACGTTTTCCCCCTCCGCAGACGGGACA
TTGGGCTACCTACATGCAAAAAGTGTCTCGTGCGCTCATTCGTACCCGTG
CTCGAGCGCGTGCTTAACCGTTTCACCCCTGGGGTCCGTATAATCATAGG
GTTGTAGTGTGCAAGTCCAATTTAGCAGGGGTAAAACGGTTCAGCGGACG
TGCTGCCTTCCAAGCATACATGATTCGAGTTGCATACAGTACAGTAGTAC
TTGTGTGTCGGTATCTGAGACTCGCAAACACCTACATACGTAGCCCCATC
CCGGCCCCGTCTCTTCAGGCGAGGCCGACACCAACCCACCGCCACACCTC
CCCTCCGTGCTGCGCTCGCAGCCCCTGCTGCAGCCAGTGGTGCAATATCG
ATCAGTACGTATCTAGTCATCGGGCTCGACTGATTTCGTGGGTGGCATTG
CTAAACACTCAGATTTAGTGTGGGCCAAACTATCGAATATCGACTATCGA
TAGATATATGGATCAGTACTGTCGATAAATAGGTTGATTTGCTTACTTAG
ATATTCCATCACTGCCTGCTGCAGCTCACCACCCCCTCCTGCCCCCCCGC
CCCGGCCGGCCGCGGGCTCTTCTTCTTGTCACGTCCTCCCTCAGGTTCTG
GCCAGGTACCCTGAAACCACCACCTTCTACCCCGGGAAAGTGACCAAGCC
TGTGCCGCACAGGGCCAGCCTGACGGAGGACTGCACCGTGAGCGTGCAGT
TTGAGGACGACAAGAACGCCACCAACGGCAAGACTCCCCACCGCCTGGTG
CAGACGACGTATGCCATCCCCTTTACCGAGGCGGAGAACGCGTACGACGG
GTGAGTGGGGGGCGGGGGCGGGGGTGCTGAGGGAGCGGGTAGGAGCAGTG
GAATATCTAGGCAAGTCAACGTATTTATCGACGGTGCTGATCTACGAGTA
TATATCTATCGATAGTGGATATTCGATAGTTGGACCCACACTAAATCCAA
GTAGTTAAGTAGTAACACCACCCACAATACCAGTCGAGCCCGATAGCTAT
CCACTGATCGATATTCCATCACTGCGGGAACCTGTCCGGCCAACCACACC
ATACAGGGATGGCGCCTTCTACAAAGACCCGCACGGCATGCAGCCCCCGG
AGACCGGCGCCTGGCACCAGCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2440441..2442562-

>mRNA_S-ischiensis_contig9.20669.1 ID=mRNA_S-ischiensis_contig9.20669.1|Name=mRNA_S-ischiensis_contig9.20669.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1014bp|location=Sequence derived from alignment at S-ischiensis_contig9:2440441..2442562- (Schizocladia ischiensis KU_0333)
AGGCGCACGCGGTTTGCCGAGCCGGAGCAGATTGCGGCCAAGGGCGAGCA
GAGGCGCACGCGGTTTGCCGAGCCGGAGCAGATTGCGGCCAAGGGCGAGC
AGGTGGCGGTCCGGTCTGCGCAGCACGAGGCGTGGATCCTGGCGTCGGTG
GTGCGCTACCTCCCGTCCCGGCACGCGTACGAGGTGCGGGACGCGGACAT
GACTGCCTCGAGGGAGAAGATGGAGGTCAAGGTCGATTCGGTGCTGCTGC
TCACCAAGTCCACCGAGCACCTCAGCAAGGGCACGCATGTGGCGGTCCGG
TCTGCGCAGCACGAGGCGTGGATCCTGGCGTCGGTGGTGCGCTACCTCCC
GTCCCGGCACGCGTACGAGGTGCGGGACGCGGACATGACTGCCTCGAGGG
AGAAGATGGAGGTCAAGGTCGATTCGGTGCTGCTGCTCACCAAGTCCACC
GAGCACCTCAGCAAGGGCACGCATGTTCTGGCCAGGTACCCTGAAACCAC
CACCTTCTACCCCGGGAAAGTGACCAAGCCTGTGCCGCACAGGGCCAGCC
TGACGGAGGACTGCACCGTGAGCGTGCAGTTTGAGGACGACAAGAACGCC
ACCAACGGCAAGACTCCCCACCGCCTGGTGCAGACGACGTATGCCATCCC
CTTTACCGAGGCGGAGAACGCGTACGACGGGTTCTGGCCAGGTACCCTGA
AACCACCACCTTCTACCCCGGGAAAGTGACCAAGCCTGTGCCGCACAGGG
CCAGCCTGACGGAGGACTGCACCGTGAGCGTGCAGTTTGAGGACGACAAG
AACGCCACCAACGGCAAGACTCCCCACCGCCTGGTGCAGACGACGTATGC
CATCCCCTTTACCGAGGCGGAGAACGCGTACGACGGGGATGGCGCCTTCT
ACAAAGACCCGCACGGCATGCAGCCCCCGGAGACCGGCGCCTGGCACCAG
GGATGGCGCCTTCTACAAAGACCCGCACGGCATGCAGCCCCCGGAGACCG
GCGCCTGGCACCAG
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